Wall clock time and date at job start Sat Apr 11 2020 05:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38236 * 119.99732 * 2 1 4 4 C 1.38235 * 119.99432 * 180.02562 * 3 2 1 5 5 C 1.38232 * 120.00385 * 359.97438 * 4 3 2 6 6 S 1.76205 * 120.00006 * 179.97438 * 5 4 3 7 7 O 1.42098 * 104.27945 * 333.93601 * 6 5 4 8 8 O 1.42095 * 104.27909 * 206.07370 * 6 5 4 9 9 C 1.81404 * 104.44511 * 90.00677 * 6 5 4 10 10 C 1.52996 * 109.47076 * 180.02562 * 9 6 5 11 11 C 1.50697 * 109.47364 * 179.97438 * 10 9 6 12 12 O 1.21286 * 120.00046 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00215 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99903 * 0.02562 * 13 11 10 15 15 C 1.46506 * 120.00185 * 179.97438 * 13 11 10 16 16 H 1.09005 * 109.46943 * 0.02562 * 15 13 11 17 17 C 1.53000 * 109.47074 * 240.00282 * 15 13 11 18 18 C 1.50696 * 109.46871 * 119.99743 * 15 13 11 19 19 H 1.07999 * 120.00319 * 0.02562 * 18 15 13 20 20 C 1.37885 * 119.99717 * 180.02562 * 18 15 13 21 21 N 1.31516 * 119.99913 * 180.02562 * 20 18 15 22 22 Si 1.86798 * 119.99766 * 0.02562 * 20 18 15 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 C 1.38234 * 119.99944 * 0.25968 * 5 4 3 27 27 C 1.38233 * 119.99844 * 359.46785 * 26 5 4 28 28 H 1.08994 * 109.47264 * 90.00051 * 1 2 3 29 29 H 1.09003 * 109.46791 * 210.00398 * 1 2 3 30 30 H 1.09000 * 109.46823 * 329.99831 * 1 2 3 31 31 H 1.07997 * 120.00115 * 359.97429 * 3 2 1 32 32 H 1.08002 * 119.99669 * 179.97438 * 4 3 2 33 33 H 1.08999 * 109.47259 * 59.99868 * 9 6 5 34 34 H 1.08999 * 109.46765 * 300.00048 * 9 6 5 35 35 H 1.08999 * 109.47336 * 59.99729 * 10 9 6 36 36 H 1.09000 * 109.46953 * 300.00069 * 10 9 6 37 37 H 1.09005 * 109.46997 * 269.99424 * 14 13 11 38 38 H 1.08997 * 109.47497 * 29.99773 * 14 13 11 39 39 H 1.09004 * 109.47127 * 150.00271 * 14 13 11 40 40 H 1.08996 * 109.47024 * 59.99854 * 17 15 13 41 41 H 1.08998 * 109.46637 * 179.97438 * 17 15 13 42 42 H 1.08997 * 109.46749 * 299.99711 * 17 15 13 43 43 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 44 44 H 1.08005 * 120.00041 * 179.72380 * 26 5 4 45 45 H 1.08002 * 120.00008 * 180.27470 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 0.0000 -0.0005 6 16 6.0338 0.0000 -0.0019 7 8 6.3838 1.2368 -0.6078 8 8 6.3838 -1.2371 -0.6069 9 6 6.4876 0.0006 1.7544 10 6 8.0118 0.0013 1.8873 11 6 8.3889 0.0024 3.3463 12 8 7.5238 0.0022 4.1963 13 7 9.6876 0.0027 3.7067 14 6 10.7327 0.0024 2.6800 15 6 10.0542 0.0044 5.1252 16 1 9.1501 0.0048 5.7341 17 6 10.8803 1.2539 5.4369 18 6 10.8675 -1.2259 5.4352 19 1 11.0895 -1.9376 4.6537 20 6 11.3282 -1.4429 6.7165 21 7 12.0384 -2.5162 6.9870 22 14 10.9436 -0.2122 8.0682 23 1 12.0156 0.8140 8.1230 24 1 9.6429 0.4453 7.7836 25 1 10.8667 -0.9178 9.3726 26 6 3.5806 -1.1971 -0.0054 27 6 2.1982 -1.1971 0.0008 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.6582 2.1325 -0.0004 32 1 4.1205 2.1324 -0.0010 33 1 6.0811 -0.8892 2.2351 34 1 6.0810 0.8908 2.2344 35 1 8.4180 0.8913 1.4067 36 1 8.4188 -0.8886 1.4071 37 1 10.9920 -1.0253 2.4258 38 1 10.3682 0.5159 1.7903 39 1 11.6156 0.5165 3.0601 40 1 10.2920 2.1436 5.2127 41 1 11.1526 1.2553 6.4923 42 1 11.7843 1.2530 4.8280 43 1 12.3628 -2.6687 7.8883 44 1 4.1206 -2.1325 -0.0099 45 1 1.6582 -2.1325 0.0015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349371752.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:12 Heat of formation + Delta-G solvation = -74.758994 kcal Electronic energy + Delta-G solvation = -26883.801096 eV Core-core repulsion = 22994.109637 eV Total energy + Delta-G solvation = -3889.691459 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.67673 -39.41488 -37.25000 -36.09954 -35.72212 -33.42508 -33.38879 -32.55678 -31.40495 -30.37730 -27.74535 -26.36275 -25.40041 -24.94767 -23.23328 -22.25513 -21.08835 -19.21591 -18.63864 -17.96322 -17.19058 -16.62621 -16.47214 -15.86489 -15.73623 -15.61567 -15.41729 -15.05351 -14.73174 -14.44192 -14.26225 -13.90918 -13.67509 -13.20392 -12.98628 -12.76788 -12.70998 -12.52895 -12.43427 -12.37081 -12.26631 -12.21039 -12.14395 -11.81750 -11.74923 -11.52375 -11.51486 -11.14805 -11.10235 -10.78562 -10.69874 -10.17918 -9.70150 -9.46750 -9.39675 -9.39530 -9.16542 -8.67331 -7.82211 -6.18038 -4.19059 -0.15253 0.49095 0.95483 2.67633 3.06064 3.11048 3.20328 3.33910 3.35786 3.57024 3.82381 3.96070 4.31549 4.34328 4.35515 4.36881 4.55657 4.65439 4.89392 4.90461 4.94437 5.09080 5.14199 5.21022 5.24678 5.26950 5.44844 5.52849 5.59699 5.63906 5.70986 5.74961 5.80114 5.94059 6.06533 6.15978 6.21655 6.28763 6.43662 6.48543 6.79158 7.04690 7.25773 7.57465 8.08682 8.41546 8.74489 8.84360 9.42475 10.94626 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019280 B = 0.002459 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.925598 B =11385.863693 C =11908.558614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.034 4.034 3 C -0.144 4.144 4 C -0.019 4.019 5 C -0.663 4.663 6 S 2.495 3.505 7 O -0.938 6.938 8 O -0.936 6.936 9 C -0.583 4.583 10 C -0.137 4.137 11 C 0.515 3.485 12 O -0.550 6.550 13 N -0.585 5.585 14 C 0.080 3.920 15 C 0.228 3.772 16 H 0.063 0.937 17 C -0.162 4.162 18 C -0.529 4.529 19 H 0.079 0.921 20 C 0.075 3.925 21 N -0.894 5.894 22 Si 0.884 3.116 23 H -0.277 1.277 24 H -0.264 1.264 25 H -0.294 1.294 26 C -0.018 4.018 27 C -0.143 4.143 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.132 0.868 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.077 0.923 40 H 0.033 0.967 41 H 0.051 0.949 42 H 0.057 0.943 43 H 0.266 0.734 44 H 0.144 0.856 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.615 7.183 -15.840 25.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.034 4.034 3 C -0.163 4.163 4 C -0.038 4.038 5 C -0.750 4.750 6 S 2.676 3.324 7 O -0.935 6.935 8 O -0.933 6.933 9 C -0.713 4.713 10 C -0.178 4.178 11 C 0.300 3.700 12 O -0.429 6.429 13 N -0.316 5.316 14 C -0.064 4.064 15 C 0.126 3.874 16 H 0.081 0.919 17 C -0.220 4.220 18 C -0.567 4.567 19 H 0.097 0.903 20 C -0.128 4.128 21 N -0.531 5.531 22 Si 0.713 3.287 23 H -0.204 1.204 24 H -0.188 1.188 25 H -0.221 1.221 26 C -0.037 4.037 27 C -0.162 4.162 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.150 0.850 32 H 0.160 0.840 33 H 0.163 0.837 34 H 0.161 0.839 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.053 0.947 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.161 0.839 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -18.435 7.073 -15.975 25.398 hybrid contribution -0.600 0.504 1.423 1.624 sum -19.034 7.577 -14.553 25.130 Atomic orbital electron populations 1.20944 0.90595 1.03520 1.02954 1.20298 0.96523 0.93382 0.93231 1.21185 0.94182 0.98020 1.02878 1.20979 0.94749 0.96759 0.91270 1.30554 1.26063 0.99509 1.18859 1.05476 0.74278 0.74811 0.77829 1.93564 1.82065 1.44494 1.73390 1.93575 1.81981 1.44349 1.73371 1.30066 1.04448 1.13732 1.23038 1.21460 0.92254 1.05638 0.98479 1.19931 0.83061 0.77400 0.89604 1.90650 1.48618 1.51271 1.52324 1.47876 1.04508 1.70421 1.08785 1.21704 0.92330 1.02075 0.90257 1.19334 0.96520 0.94249 0.77261 0.91884 1.22465 1.00624 0.98053 1.00862 1.21149 1.33256 1.05673 0.96608 0.90263 1.24876 0.94314 0.95350 0.98239 1.69874 1.35646 1.26551 1.21043 0.86912 0.79528 0.80929 0.81282 1.20368 1.18845 1.22125 1.21004 0.94767 0.96833 0.91059 1.21199 0.94192 0.98051 1.02754 0.90372 0.90884 0.90917 0.85030 0.83967 0.83743 0.83933 0.87594 0.87361 0.92332 0.92454 0.90446 0.94748 0.93072 0.92408 0.92394 0.83864 0.84977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.61 10.01 36.01 0.36 -0.25 16 2 C -0.03 -0.27 5.88 -104.62 -0.62 -0.88 16 3 C -0.14 -1.18 9.70 -39.58 -0.38 -1.57 16 4 C -0.02 -0.18 9.47 -39.58 -0.37 -0.55 16 5 C -0.66 -6.87 5.66 -39.59 -0.22 -7.09 16 6 S 2.49 27.60 5.16 -107.50 -0.55 27.05 16 7 O -0.94 -12.30 17.13 -57.54 -0.99 -13.28 16 8 O -0.94 -12.67 17.12 -57.54 -0.98 -13.66 16 9 C -0.58 -6.56 5.27 37.16 0.20 -6.36 16 10 C -0.14 -1.80 4.26 -27.89 -0.12 -1.92 16 11 C 0.51 9.65 7.67 -10.99 -0.08 9.56 16 12 O -0.55 -12.18 15.31 5.55 0.09 -12.10 16 13 N -0.59 -11.60 2.75 -175.25 -0.48 -12.08 16 14 C 0.08 1.24 9.48 59.85 0.57 1.81 16 15 C 0.23 5.39 2.23 -69.08 -0.15 5.24 16 16 H 0.06 1.65 5.95 -51.93 -0.31 1.34 16 17 C -0.16 -3.40 8.65 37.16 0.32 -3.08 16 18 C -0.53 -14.40 8.95 -34.44 -0.31 -14.71 16 19 H 0.08 2.32 7.89 -52.49 -0.41 1.91 16 20 C 0.08 2.12 5.45 -17.82 -0.10 2.02 16 21 N -0.89 -26.67 13.96 55.43 0.77 -25.90 16 22 Si 0.88 21.59 24.37 -169.99 -4.14 17.44 16 23 H -0.28 -6.46 6.87 56.52 0.39 -6.07 16 24 H -0.26 -6.35 6.53 56.52 0.37 -5.98 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 C -0.02 -0.17 9.47 -39.58 -0.37 -0.55 16 27 C -0.14 -1.20 9.70 -39.58 -0.38 -1.58 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 30 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 31 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.14 1.15 7.57 -52.49 -0.40 0.75 16 33 H 0.14 1.57 8.10 -51.92 -0.42 1.15 16 34 H 0.14 1.46 8.10 -51.92 -0.42 1.04 16 35 H 0.11 1.11 7.40 -51.93 -0.38 0.72 16 36 H 0.11 1.24 8.11 -51.93 -0.42 0.82 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.66 6.44 -51.93 -0.33 0.32 16 39 H 0.08 1.19 6.42 -51.93 -0.33 0.86 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.05 1.13 3.28 -51.93 -0.17 0.96 16 42 H 0.06 1.12 6.66 -51.93 -0.35 0.77 16 43 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.14 1.22 7.57 -52.48 -0.40 0.83 16 45 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 LS Contribution 376.68 15.07 5.68 5.68 Total: -1.00 -37.19 376.68 -8.77 -45.96 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -6.48 Total: 0.81 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: -1.67 Total: -19.93 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.29 Total: -37.98 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -1.89 Total: -39.04 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.14 Total: 17.44 kcal Atomic # 16 Polarization: 27.60 SS G_CDS: -0.55 Total: 27.05 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.19 -8.77 -45.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349371752.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.797 kcal (2) G-P(sol) polarization free energy of solvation -37.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds