Wall clock time and date at job start Sat Apr 11 2020 05:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38236 * 119.99732 * 2 1 4 4 C 1.38235 * 119.99432 * 180.02562 * 3 2 1 5 5 C 1.38232 * 120.00385 * 359.97438 * 4 3 2 6 6 S 1.76205 * 120.00006 * 179.97438 * 5 4 3 7 7 O 1.42098 * 104.27945 * 333.93601 * 6 5 4 8 8 O 1.42095 * 104.27909 * 206.07370 * 6 5 4 9 9 C 1.81404 * 104.44511 * 90.00677 * 6 5 4 10 10 C 1.52996 * 109.47076 * 180.02562 * 9 6 5 11 11 C 1.50697 * 109.47364 * 179.97438 * 10 9 6 12 12 O 1.21286 * 120.00046 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00215 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99903 * 0.02562 * 13 11 10 15 15 C 1.46506 * 120.00185 * 179.97438 * 13 11 10 16 16 H 1.09005 * 109.46943 * 0.02562 * 15 13 11 17 17 C 1.53000 * 109.47074 * 240.00282 * 15 13 11 18 18 C 1.50696 * 109.46871 * 119.99743 * 15 13 11 19 19 H 1.07999 * 120.00319 * 0.02562 * 18 15 13 20 20 C 1.37885 * 119.99717 * 180.02562 * 18 15 13 21 21 N 1.31516 * 119.99913 * 180.02562 * 20 18 15 22 22 Si 1.86798 * 119.99766 * 0.02562 * 20 18 15 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 C 1.38234 * 119.99944 * 0.25968 * 5 4 3 27 27 C 1.38233 * 119.99844 * 359.46785 * 26 5 4 28 28 H 1.08994 * 109.47264 * 90.00051 * 1 2 3 29 29 H 1.09003 * 109.46791 * 210.00398 * 1 2 3 30 30 H 1.09000 * 109.46823 * 329.99831 * 1 2 3 31 31 H 1.07997 * 120.00115 * 359.97429 * 3 2 1 32 32 H 1.08002 * 119.99669 * 179.97438 * 4 3 2 33 33 H 1.08999 * 109.47259 * 59.99868 * 9 6 5 34 34 H 1.08999 * 109.46765 * 300.00048 * 9 6 5 35 35 H 1.08999 * 109.47336 * 59.99729 * 10 9 6 36 36 H 1.09000 * 109.46953 * 300.00069 * 10 9 6 37 37 H 1.09005 * 109.46997 * 269.99424 * 14 13 11 38 38 H 1.08997 * 109.47497 * 29.99773 * 14 13 11 39 39 H 1.09004 * 109.47127 * 150.00271 * 14 13 11 40 40 H 1.08996 * 109.47024 * 59.99854 * 17 15 13 41 41 H 1.08998 * 109.46637 * 179.97438 * 17 15 13 42 42 H 1.08997 * 109.46749 * 299.99711 * 17 15 13 43 43 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 44 44 H 1.08005 * 120.00041 * 179.72380 * 26 5 4 45 45 H 1.08002 * 120.00008 * 180.27470 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 0.0000 -0.0005 6 16 6.0338 0.0000 -0.0019 7 8 6.3838 1.2368 -0.6078 8 8 6.3838 -1.2371 -0.6069 9 6 6.4876 0.0006 1.7544 10 6 8.0118 0.0013 1.8873 11 6 8.3889 0.0024 3.3463 12 8 7.5238 0.0022 4.1963 13 7 9.6876 0.0027 3.7067 14 6 10.7327 0.0024 2.6800 15 6 10.0542 0.0044 5.1252 16 1 9.1501 0.0048 5.7341 17 6 10.8803 1.2539 5.4369 18 6 10.8675 -1.2259 5.4352 19 1 11.0895 -1.9376 4.6537 20 6 11.3282 -1.4429 6.7165 21 7 12.0384 -2.5162 6.9870 22 14 10.9436 -0.2122 8.0682 23 1 12.0156 0.8140 8.1230 24 1 9.6429 0.4453 7.7836 25 1 10.8667 -0.9178 9.3726 26 6 3.5806 -1.1971 -0.0054 27 6 2.1982 -1.1971 0.0008 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.6582 2.1325 -0.0004 32 1 4.1205 2.1324 -0.0010 33 1 6.0811 -0.8892 2.2351 34 1 6.0810 0.8908 2.2344 35 1 8.4180 0.8913 1.4067 36 1 8.4188 -0.8886 1.4071 37 1 10.9920 -1.0253 2.4258 38 1 10.3682 0.5159 1.7903 39 1 11.6156 0.5165 3.0601 40 1 10.2920 2.1436 5.2127 41 1 11.1526 1.2553 6.4923 42 1 11.7843 1.2530 4.8280 43 1 12.3628 -2.6687 7.8883 44 1 4.1206 -2.1325 -0.0099 45 1 1.6582 -2.1325 0.0015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349371752.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:11 Heat of formation + Delta-G solvation = -101.255841 kcal Electronic energy + Delta-G solvation = -26884.950085 eV Core-core repulsion = 22994.109637 eV Total energy + Delta-G solvation = -3890.840448 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.91457 -40.29673 -38.21520 -37.37651 -37.07019 -34.92163 -34.17216 -33.99704 -32.11189 -32.04010 -28.28134 -27.72446 -27.17136 -26.34194 -23.87280 -23.04764 -22.57463 -20.07457 -20.00693 -19.10314 -18.76659 -18.11802 -17.46941 -17.34093 -16.76253 -16.69252 -16.33992 -16.18011 -15.90195 -15.37556 -15.07730 -14.80287 -14.74589 -14.64964 -14.52167 -14.11733 -13.81287 -13.67925 -13.51442 -13.25520 -13.23869 -13.13243 -13.10136 -13.07809 -13.05736 -12.98470 -12.56704 -12.47358 -12.10420 -12.06561 -12.01236 -11.62002 -11.58990 -11.34889 -10.81000 -10.73454 -10.06948 -10.05084 -9.43232 -8.35746 -6.40471 -1.02749 -0.19580 0.30489 1.25706 1.34997 1.43510 1.67182 1.83379 2.21086 2.26810 2.41986 2.87150 2.99455 3.11650 3.32809 3.69350 3.71281 3.84098 3.85917 3.94993 4.22006 4.31458 4.35030 4.44465 4.46218 4.50257 4.60080 4.61596 4.67052 4.69496 4.77430 4.78835 4.82719 4.97691 5.00621 5.08588 5.09034 5.09803 5.23937 5.32252 5.47705 5.48105 5.69195 5.88005 6.18457 6.61724 6.69793 7.18467 7.32413 8.80291 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019280 B = 0.002459 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.925598 B =11385.863693 C =11908.558614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.037 4.037 3 C -0.150 4.150 4 C -0.035 4.035 5 C -0.676 4.676 6 S 2.524 3.476 7 O -0.957 6.957 8 O -0.963 6.963 9 C -0.582 4.582 10 C -0.138 4.138 11 C 0.507 3.493 12 O -0.591 6.591 13 N -0.596 5.596 14 C 0.073 3.927 15 C 0.228 3.772 16 H 0.034 0.966 17 C -0.155 4.155 18 C -0.526 4.526 19 H 0.045 0.955 20 C 0.021 3.979 21 N -0.940 5.940 22 Si 0.943 3.057 23 H -0.254 1.254 24 H -0.261 1.261 25 H -0.297 1.297 26 C -0.037 4.037 27 C -0.152 4.152 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.156 0.844 32 H 0.152 0.848 33 H 0.144 0.856 34 H 0.153 0.847 35 H 0.140 0.860 36 H 0.126 0.874 37 H 0.051 0.949 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.058 0.942 41 H 0.041 0.959 42 H 0.072 0.928 43 H 0.268 0.732 44 H 0.147 0.853 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.175 9.233 -16.906 27.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.037 4.037 3 C -0.169 4.169 4 C -0.053 4.053 5 C -0.764 4.764 6 S 2.707 3.293 7 O -0.955 6.955 8 O -0.960 6.960 9 C -0.712 4.712 10 C -0.179 4.179 11 C 0.294 3.706 12 O -0.473 6.473 13 N -0.326 5.326 14 C -0.069 4.069 15 C 0.125 3.875 16 H 0.052 0.948 17 C -0.213 4.213 18 C -0.565 4.565 19 H 0.063 0.937 20 C -0.178 4.178 21 N -0.579 5.579 22 Si 0.770 3.230 23 H -0.179 1.179 24 H -0.185 1.185 25 H -0.225 1.225 26 C -0.056 4.056 27 C -0.171 4.171 28 H 0.108 0.892 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.174 0.826 32 H 0.170 0.830 33 H 0.162 0.838 34 H 0.171 0.829 35 H 0.158 0.842 36 H 0.144 0.856 37 H 0.069 0.931 38 H 0.123 0.877 39 H 0.097 0.903 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.091 0.909 43 H 0.077 0.923 44 H 0.165 0.835 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -19.958 9.138 -17.085 27.816 hybrid contribution -0.225 -0.206 1.673 1.700 sum -20.183 8.932 -15.413 26.920 Atomic orbital electron populations 1.21016 0.88412 1.04527 1.03928 1.20717 0.98202 0.93022 0.91764 1.21550 0.93863 0.99363 1.02131 1.21254 0.95690 0.96836 0.91560 1.30335 1.25074 1.00326 1.20704 1.04455 0.74319 0.73554 0.76982 1.93528 1.82876 1.45182 1.73874 1.93534 1.82919 1.45496 1.74067 1.30081 1.03395 1.14382 1.23370 1.21583 0.93708 1.08145 0.94447 1.20839 0.82119 0.75923 0.91677 1.90621 1.49624 1.52921 1.54144 1.47958 1.06073 1.70610 1.08005 1.21974 0.91658 1.02443 0.90859 1.19008 0.94863 0.93893 0.79737 0.94815 1.22324 1.01095 0.97389 1.00487 1.21379 1.32872 1.06478 0.95768 0.93667 1.25677 0.94284 0.97101 1.00731 1.70008 1.37479 1.28680 1.21750 0.85957 0.80020 0.79108 0.77957 1.17902 1.18538 1.22459 1.21232 0.95750 0.96899 0.91753 1.21534 0.93826 0.99433 1.02259 0.89234 0.90026 0.89837 0.82624 0.83007 0.83757 0.82932 0.84241 0.85604 0.93061 0.87689 0.90334 0.92275 0.94011 0.90931 0.92274 0.83514 0.82918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 10.01 71.24 0.71 -0.16 16 2 C -0.04 -0.50 5.88 -19.86 -0.12 -0.62 16 3 C -0.15 -2.17 9.70 22.27 0.22 -1.95 16 4 C -0.03 -0.61 9.47 22.27 0.21 -0.40 16 5 C -0.68 -13.46 5.66 22.27 0.13 -13.34 16 6 S 2.52 53.35 5.16 -56.49 -0.29 53.05 16 7 O -0.96 -23.76 17.13 -127.65 -2.19 -25.95 16 8 O -0.96 -25.53 17.12 -127.65 -2.19 -27.72 16 9 C -0.58 -12.44 5.27 71.98 0.38 -12.06 16 10 C -0.14 -3.36 4.26 29.85 0.13 -3.24 16 11 C 0.51 18.57 7.67 87.66 0.67 19.24 16 12 O -0.59 -26.33 15.31 -3.05 -0.05 -26.38 16 13 N -0.60 -23.14 2.75 -826.77 -2.28 -25.41 16 14 C 0.07 2.13 9.48 127.77 1.21 3.34 16 15 C 0.23 10.76 2.23 44.24 0.10 10.86 16 16 H 0.03 1.79 5.95 -2.38 -0.01 1.78 16 17 C -0.16 -6.22 8.65 71.98 0.62 -5.60 16 18 C -0.53 -29.33 8.95 25.60 0.23 -29.10 16 19 H 0.05 2.75 7.89 -2.91 -0.02 2.73 16 20 C 0.02 1.19 5.45 84.66 0.46 1.65 16 21 N -0.94 -57.55 13.96 21.45 0.30 -57.25 16 22 Si 0.94 44.70 24.37 68.60 1.67 46.38 16 23 H -0.25 -11.02 6.87 99.48 0.68 -10.33 16 24 H -0.26 -12.14 6.53 99.48 0.65 -11.49 16 25 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 26 C -0.04 -0.71 9.47 22.27 0.21 -0.49 16 27 C -0.15 -2.32 9.70 22.27 0.22 -2.11 16 28 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.08 0.46 8.09 -2.39 -0.02 0.44 16 30 H 0.08 0.44 8.09 -2.39 -0.02 0.42 16 31 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 32 H 0.15 2.25 7.57 -2.91 -0.02 2.22 16 33 H 0.14 3.09 8.10 -2.39 -0.02 3.07 16 34 H 0.15 2.94 8.10 -2.39 -0.02 2.92 16 35 H 0.14 2.44 7.40 -2.39 -0.02 2.42 16 36 H 0.13 2.63 8.11 -2.39 -0.02 2.61 16 37 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.10 2.04 6.44 -2.39 -0.02 2.03 16 39 H 0.08 2.27 6.42 -2.38 -0.02 2.26 16 40 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.04 1.74 3.28 -2.39 -0.01 1.74 16 42 H 0.07 2.66 6.66 -2.39 -0.02 2.64 16 43 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 44 H 0.15 2.50 7.57 -2.91 -0.02 2.48 16 45 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -82.44 376.68 1.28 -81.16 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.91 Total: 16.09 kcal Atomic # 6 Polarization: -39.35 SS G_CDS: 5.38 Total: -33.97 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -1.98 Total: -82.67 kcal Atomic # 8 Polarization: -75.62 SS G_CDS: -4.42 Total: -80.04 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.67 Total: 46.38 kcal Atomic # 16 Polarization: 53.35 SS G_CDS: -0.29 Total: 53.05 kcal Total: -82.44 1.28 -81.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349371752.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.091 kcal (2) G-P(sol) polarization free energy of solvation -82.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds