Wall clock time and date at job start Sat Apr 11 2020 05:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52990 * 109.47197 * 2 1 4 4 C 1.52999 * 109.47089 * 239.99510 * 2 1 3 5 5 C 1.50703 * 109.46747 * 60.00230 * 4 2 1 6 6 H 1.08001 * 120.00122 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99959 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99920 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00031 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47038 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47306 * 119.99682 * 9 7 5 12 12 H 1.48504 * 109.46871 * 239.99763 * 9 7 5 13 13 C 1.52999 * 109.47041 * 120.00094 * 2 1 3 14 14 N 1.46505 * 109.46914 * 299.99936 * 13 2 1 15 15 C 1.34783 * 119.99616 * 180.02562 * 14 13 2 16 16 O 1.21549 * 120.00340 * 359.97438 * 15 14 13 17 17 C 1.47846 * 119.99584 * 179.97438 * 15 14 13 18 18 C 1.39593 * 120.14515 * 359.97359 * 17 15 14 19 19 C 1.37944 * 119.85440 * 180.02562 * 18 17 15 20 20 C 1.38384 * 120.14024 * 359.72763 * 19 18 17 21 21 C 1.38333 * 120.29484 * 0.55081 * 20 19 18 22 22 C 1.37979 * 120.14317 * 359.44604 * 21 20 19 23 23 S 1.76201 * 120.07330 * 180.29806 * 22 21 20 24 24 C 1.81400 * 104.45013 * 115.00120 * 23 22 21 25 25 O 1.42103 * 104.27792 * 231.07556 * 23 22 21 26 26 O 1.42101 * 104.28015 * 358.93062 * 23 22 21 27 27 H 1.09001 * 109.47100 * 299.99886 * 1 2 3 28 28 H 1.09001 * 109.47366 * 60.00039 * 1 2 3 29 29 H 1.09005 * 109.47161 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47062 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47387 * 299.99953 * 3 2 1 32 32 H 1.08996 * 109.47683 * 59.99913 * 3 2 1 33 33 H 1.09001 * 109.47225 * 180.02562 * 4 2 1 34 34 H 1.09003 * 109.47453 * 300.00444 * 4 2 1 35 35 H 0.97003 * 119.99968 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.47039 * 179.97438 * 13 2 1 37 37 H 1.09005 * 109.47615 * 59.99700 * 13 2 1 38 38 H 0.96995 * 120.00435 * 359.97438 * 14 13 2 39 39 H 1.07996 * 120.07521 * 359.97438 * 18 17 15 40 40 H 1.08000 * 119.92878 * 180.02562 * 19 18 17 41 41 H 1.08003 * 119.85150 * 180.29800 * 20 19 18 42 42 H 1.08002 * 119.93106 * 179.72803 * 21 20 19 43 43 H 1.09001 * 109.46794 * 60.00075 * 24 23 22 44 44 H 1.09004 * 109.47219 * 179.97438 * 24 23 22 45 45 H 1.08990 * 109.47102 * 300.00167 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9165 0.8669 -2.3806 7 6 1.8703 -0.4823 -3.7319 8 7 2.6263 -1.5517 -3.8526 9 14 1.2482 0.3986 -5.2572 10 1 0.4237 1.5657 -4.8530 11 1 2.4035 0.8644 -6.0656 12 1 0.4224 -0.5342 -6.0654 13 6 2.0400 -0.7213 1.2492 14 7 1.5516 -0.0306 2.4454 15 6 1.8777 -0.4908 3.6695 16 8 2.5765 -1.4791 3.7811 17 6 1.3853 0.2065 4.8767 18 6 0.5831 1.3420 4.7521 19 6 0.1274 1.9883 5.8824 20 6 0.4593 1.5098 7.1377 21 6 1.2587 0.3884 7.2682 22 6 1.7210 -0.2674 6.1457 23 16 2.7326 -1.7002 6.3141 24 6 1.7325 -3.0446 5.6190 25 8 3.8564 -1.4351 5.4858 26 8 2.8794 -1.8626 7.7181 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1300 -0.7218 -1.2490 34 1 1.6766 -1.7490 -1.2492 35 1 2.8607 -1.8831 -4.7336 36 1 3.1300 -0.7217 1.2490 37 1 1.6767 -1.7490 1.2493 38 1 0.9943 0.7582 2.3565 39 1 0.3204 1.7143 3.7729 40 1 -0.4937 2.8667 5.7874 41 1 0.0960 2.0167 8.0196 42 1 1.5177 0.0226 8.2508 43 1 1.5060 -2.8267 4.5753 44 1 2.2876 -3.9806 5.6822 45 1 0.8032 -3.1342 6.1813 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359761673.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:23 Heat of formation + Delta-G solvation = -74.948131 kcal Electronic energy + Delta-G solvation = -27893.049343 eV Core-core repulsion = 24003.349683 eV Total energy + Delta-G solvation = -3889.699661 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -40.62257 -38.78958 -37.44789 -36.68014 -35.74309 -33.99868 -32.36197 -31.74037 -31.39795 -29.39071 -27.23718 -26.60576 -26.51266 -24.28144 -23.44961 -22.72768 -20.66068 -19.46608 -18.65366 -17.90030 -17.06403 -16.47967 -16.15438 -16.05145 -15.87456 -15.54072 -15.36925 -14.94095 -14.74126 -14.49631 -13.99359 -13.69818 -13.29769 -13.22467 -13.15575 -12.87982 -12.79325 -12.63463 -12.20140 -12.12002 -12.02617 -11.91563 -11.69752 -11.23125 -11.08946 -11.05761 -10.88706 -10.71390 -10.69771 -10.48948 -10.30615 -10.03805 -9.95903 -9.78451 -9.48014 -9.26959 -8.98041 -8.87893 -8.40541 -6.04332 -4.05908 0.03545 0.30914 0.67043 2.53949 2.86668 3.06874 3.26941 3.31705 3.35422 3.37150 3.85239 4.16216 4.34368 4.40985 4.44449 4.49916 4.79310 4.84720 4.89722 5.14277 5.20822 5.31228 5.32720 5.41985 5.52760 5.58854 5.64690 5.68154 5.78774 5.85718 6.05506 6.11640 6.17854 6.29445 6.30344 6.39586 6.54362 6.62895 6.96555 6.99488 7.03578 7.41990 7.58965 7.70170 7.93910 8.05448 8.35290 8.98961 9.57595 11.07079 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020752 B = 0.002730 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.953251 B =10255.189364 C =11210.204919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.074 4.074 3 C -0.129 4.129 4 C 0.036 3.964 5 C -0.512 4.512 6 H 0.060 0.940 7 C 0.057 3.943 8 N -0.893 5.893 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.124 3.876 14 N -0.703 5.703 15 C 0.527 3.473 16 O -0.514 6.514 17 C -0.040 4.040 18 C -0.106 4.106 19 C -0.075 4.075 20 C -0.119 4.119 21 C -0.031 4.031 22 C -0.613 4.613 23 S 2.512 3.488 24 C -0.642 4.642 25 O -0.905 6.905 26 O -0.961 6.961 27 H 0.027 0.973 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.027 0.973 33 H 0.020 0.980 34 H 0.019 0.981 35 H 0.260 0.740 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.400 0.600 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.151 0.849 43 H 0.150 0.850 44 H 0.128 0.872 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.646 4.744 22.246 23.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.074 4.074 3 C -0.186 4.186 4 C -0.001 4.001 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.532 5.532 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.002 3.998 14 N -0.353 5.353 15 C 0.313 3.687 16 O -0.394 6.394 17 C -0.043 4.043 18 C -0.126 4.126 19 C -0.093 4.093 20 C -0.138 4.138 21 C -0.050 4.050 22 C -0.697 4.697 23 S 2.689 3.311 24 C -0.793 4.793 25 O -0.902 6.902 26 O -0.958 6.958 27 H 0.046 0.954 28 H 0.087 0.913 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.038 0.962 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.236 0.764 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.154 0.846 42 H 0.169 0.831 43 H 0.168 0.832 44 H 0.146 0.854 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.260 3.922 22.488 23.671 hybrid contribution -1.458 1.117 -1.383 2.299 sum -7.719 5.039 21.106 23.031 Atomic orbital electron populations 1.21782 0.95248 1.01253 1.00239 1.20936 0.95472 0.95964 0.95038 1.21779 1.00818 0.95784 1.00204 1.19094 0.96496 0.95206 0.89329 1.21201 1.31246 1.12107 0.90481 0.92208 1.25013 0.95287 0.95062 0.99107 1.69970 1.36869 1.23007 1.23403 0.86596 0.78617 0.79662 0.83454 1.19823 1.21103 1.21134 1.21814 0.99676 0.96098 0.82247 1.46064 1.52057 1.31687 1.05530 1.18412 0.81211 0.85254 0.83815 1.90833 1.36532 1.26040 1.85976 1.19713 0.96556 0.96071 0.91996 1.21476 0.96747 0.94602 0.99765 1.21432 0.96954 0.98629 0.92296 1.21518 0.97852 0.96421 0.98058 1.21051 0.92453 0.93565 0.97946 1.30975 1.18044 1.23085 0.97626 1.04976 0.76095 0.76155 0.73912 1.30366 1.15100 1.18099 1.15708 1.93655 1.45766 1.82580 1.68199 1.93528 1.85487 1.86263 1.30546 0.95440 0.91253 0.93222 0.93110 0.91271 0.95428 0.96184 0.96266 0.93039 0.90862 0.91147 0.76352 0.84624 0.84518 0.84570 0.83137 0.83222 0.85382 0.86467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 8.05 37.16 0.30 -1.77 16 2 C -0.07 -1.31 0.54 -154.51 -0.08 -1.40 16 3 C -0.13 -2.14 8.05 37.15 0.30 -1.84 16 4 C 0.04 0.85 4.04 -27.88 -0.11 0.74 16 5 C -0.51 -13.18 7.65 -34.44 -0.26 -13.44 16 6 H 0.06 1.48 5.68 -52.49 -0.30 1.18 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 9 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.12 2.03 4.56 -4.04 -0.02 2.02 16 14 N -0.70 -9.42 4.91 -61.24 -0.30 -9.72 16 15 C 0.53 7.42 7.35 -12.33 -0.09 7.33 16 16 O -0.51 -8.45 9.07 -19.80 -0.18 -8.63 16 17 C -0.04 -0.46 5.86 -104.97 -0.62 -1.08 16 18 C -0.11 -0.94 9.54 -39.18 -0.37 -1.31 16 19 C -0.08 -0.52 10.03 -39.64 -0.40 -0.92 16 20 C -0.12 -0.85 10.04 -39.49 -0.40 -1.24 16 21 C -0.03 -0.29 9.49 -39.64 -0.38 -0.67 16 22 C -0.61 -6.97 5.61 -39.18 -0.22 -7.19 16 23 S 2.51 31.42 5.14 -107.50 -0.55 30.87 16 24 C -0.64 -6.31 10.14 101.05 1.02 -5.29 16 25 O -0.90 -15.35 14.84 -67.50 -1.00 -16.35 16 26 O -0.96 -13.09 16.74 -57.54 -0.96 -14.06 16 27 H 0.03 0.34 6.86 -51.93 -0.36 -0.01 16 28 H 0.07 1.22 6.62 -51.93 -0.34 0.88 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 32 H 0.03 0.36 6.86 -51.93 -0.36 0.01 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.40 4.37 4.20 -40.82 -0.17 4.20 16 39 H 0.14 0.92 6.41 -52.49 -0.34 0.58 16 40 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 41 H 0.14 0.56 8.06 -52.48 -0.42 0.14 16 42 H 0.15 1.19 7.21 -52.49 -0.38 0.81 16 43 H 0.15 1.69 5.42 -51.92 -0.28 1.41 16 44 H 0.13 1.08 8.14 -51.92 -0.42 0.65 16 45 H 0.12 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 366.69 15.07 5.53 5.53 Total: -1.00 -34.58 366.69 -9.41 -43.98 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -6.23 Total: 2.40 kcal Atomic # 6 Polarization: -23.18 SS G_CDS: -1.42 Total: -24.61 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: 0.44 Total: -34.88 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -2.14 Total: -39.04 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 31.42 SS G_CDS: -0.55 Total: 30.87 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.58 -9.41 -43.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359761673.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.965 kcal (2) G-P(sol) polarization free energy of solvation -34.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds