Wall clock time and date at job start Sat Apr 11 2020 05:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52990 * 109.47197 * 2 1 4 4 C 1.52999 * 109.47089 * 239.99510 * 2 1 3 5 5 C 1.50703 * 109.46747 * 60.00230 * 4 2 1 6 6 H 1.08001 * 120.00122 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99959 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99920 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00031 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47038 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47306 * 119.99682 * 9 7 5 12 12 H 1.48504 * 109.46871 * 239.99763 * 9 7 5 13 13 C 1.52999 * 109.47041 * 120.00094 * 2 1 3 14 14 N 1.46505 * 109.46914 * 299.99936 * 13 2 1 15 15 C 1.34783 * 119.99616 * 180.02562 * 14 13 2 16 16 O 1.21549 * 120.00340 * 359.97438 * 15 14 13 17 17 C 1.47846 * 119.99584 * 179.97438 * 15 14 13 18 18 C 1.39593 * 120.14515 * 359.97359 * 17 15 14 19 19 C 1.37944 * 119.85440 * 180.02562 * 18 17 15 20 20 C 1.38384 * 120.14024 * 359.72763 * 19 18 17 21 21 C 1.38333 * 120.29484 * 0.55081 * 20 19 18 22 22 C 1.37979 * 120.14317 * 359.44604 * 21 20 19 23 23 S 1.76201 * 120.07330 * 180.29806 * 22 21 20 24 24 C 1.81400 * 104.45013 * 115.00120 * 23 22 21 25 25 O 1.42103 * 104.27792 * 231.07556 * 23 22 21 26 26 O 1.42101 * 104.28015 * 358.93062 * 23 22 21 27 27 H 1.09001 * 109.47100 * 299.99886 * 1 2 3 28 28 H 1.09001 * 109.47366 * 60.00039 * 1 2 3 29 29 H 1.09005 * 109.47161 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47062 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47387 * 299.99953 * 3 2 1 32 32 H 1.08996 * 109.47683 * 59.99913 * 3 2 1 33 33 H 1.09001 * 109.47225 * 180.02562 * 4 2 1 34 34 H 1.09003 * 109.47453 * 300.00444 * 4 2 1 35 35 H 0.97003 * 119.99968 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.47039 * 179.97438 * 13 2 1 37 37 H 1.09005 * 109.47615 * 59.99700 * 13 2 1 38 38 H 0.96995 * 120.00435 * 359.97438 * 14 13 2 39 39 H 1.07996 * 120.07521 * 359.97438 * 18 17 15 40 40 H 1.08000 * 119.92878 * 180.02562 * 19 18 17 41 41 H 1.08003 * 119.85150 * 180.29800 * 20 19 18 42 42 H 1.08002 * 119.93106 * 179.72803 * 21 20 19 43 43 H 1.09001 * 109.46794 * 60.00075 * 24 23 22 44 44 H 1.09004 * 109.47219 * 179.97438 * 24 23 22 45 45 H 1.08990 * 109.47102 * 300.00167 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 1 0.9165 0.8669 -2.3806 7 6 1.8703 -0.4823 -3.7319 8 7 2.6263 -1.5517 -3.8526 9 14 1.2482 0.3986 -5.2572 10 1 0.4237 1.5657 -4.8530 11 1 2.4035 0.8644 -6.0656 12 1 0.4224 -0.5342 -6.0654 13 6 2.0400 -0.7213 1.2492 14 7 1.5516 -0.0306 2.4454 15 6 1.8777 -0.4908 3.6695 16 8 2.5765 -1.4791 3.7811 17 6 1.3853 0.2065 4.8767 18 6 0.5831 1.3420 4.7521 19 6 0.1274 1.9883 5.8824 20 6 0.4593 1.5098 7.1377 21 6 1.2587 0.3884 7.2682 22 6 1.7210 -0.2674 6.1457 23 16 2.7326 -1.7002 6.3141 24 6 1.7325 -3.0446 5.6190 25 8 3.8564 -1.4351 5.4858 26 8 2.8794 -1.8626 7.7181 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1300 -0.7218 -1.2490 34 1 1.6766 -1.7490 -1.2492 35 1 2.8607 -1.8831 -4.7336 36 1 3.1300 -0.7217 1.2490 37 1 1.6767 -1.7490 1.2493 38 1 0.9943 0.7582 2.3565 39 1 0.3204 1.7143 3.7729 40 1 -0.4937 2.8667 5.7874 41 1 0.0960 2.0167 8.0196 42 1 1.5177 0.0226 8.2508 43 1 1.5060 -2.8267 4.5753 44 1 2.2876 -3.9806 5.6822 45 1 0.8032 -3.1342 6.1813 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359761673.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:22 Heat of formation + Delta-G solvation = -98.603747 kcal Electronic energy + Delta-G solvation = -27894.075128 eV Core-core repulsion = 24003.349683 eV Total energy + Delta-G solvation = -3890.725445 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.59378 -39.66256 -38.77007 -37.77213 -36.81809 -35.42228 -34.11160 -32.46832 -32.20697 -30.22649 -29.10164 -27.95500 -27.78130 -25.49556 -24.34972 -24.03806 -21.72426 -20.48336 -19.73604 -19.08895 -18.35618 -17.98363 -17.19998 -17.05825 -16.88456 -16.66389 -16.44960 -16.08306 -15.79258 -15.53091 -15.34838 -14.91033 -14.61226 -14.28111 -14.09759 -13.98174 -13.93414 -13.90632 -13.41412 -13.30019 -12.99724 -12.92561 -12.78994 -12.69470 -12.63730 -12.53657 -12.33542 -12.23261 -11.99424 -11.92939 -11.59603 -11.52915 -11.18363 -10.91680 -10.81747 -10.51310 -10.43854 -10.25013 -9.99165 -8.13266 -6.20782 -0.79511 -0.51183 0.02270 1.42161 1.43605 1.54755 1.67239 1.95678 2.03683 2.45156 2.53638 2.96924 3.21738 3.33246 3.53665 3.72960 3.95207 3.98438 4.08158 4.09439 4.18350 4.21794 4.28304 4.43983 4.49347 4.67177 4.72571 4.74838 4.81681 4.91901 4.95500 4.96640 5.12173 5.13681 5.14064 5.27643 5.35383 5.45424 5.52059 5.54572 5.58210 5.73240 5.81584 5.91300 6.29895 6.39119 6.95007 7.03051 7.47141 8.99432 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020752 B = 0.002730 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.953251 B =10255.189364 C =11210.204919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.066 4.066 3 C -0.124 4.124 4 C 0.039 3.961 5 C -0.511 4.511 6 H 0.074 0.926 7 C -0.006 4.006 8 N -0.939 5.939 9 Si 0.957 3.043 10 H -0.255 1.255 11 H -0.287 1.287 12 H -0.285 1.285 13 C 0.137 3.863 14 N -0.693 5.693 15 C 0.522 3.478 16 O -0.545 6.545 17 C -0.064 4.064 18 C -0.104 4.104 19 C -0.066 4.066 20 C -0.108 4.108 21 C -0.043 4.043 22 C -0.623 4.623 23 S 2.509 3.491 24 C -0.631 4.631 25 O -0.962 6.962 26 O -0.982 6.982 27 H 0.072 0.928 28 H 0.056 0.944 29 H 0.040 0.960 30 H 0.034 0.966 31 H 0.057 0.943 32 H 0.070 0.930 33 H -0.016 1.016 34 H -0.011 1.011 35 H 0.259 0.741 36 H 0.048 0.952 37 H 0.060 0.940 38 H 0.414 0.586 39 H 0.159 0.841 40 H 0.177 0.823 41 H 0.173 0.827 42 H 0.157 0.843 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.973 7.804 23.902 27.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.066 4.066 3 C -0.182 4.182 4 C 0.002 3.998 5 C -0.549 4.549 6 H 0.092 0.908 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.783 3.217 10 H -0.179 1.179 11 H -0.213 1.213 12 H -0.211 1.211 13 C 0.014 3.986 14 N -0.345 5.345 15 C 0.310 3.690 16 O -0.426 6.426 17 C -0.068 4.068 18 C -0.123 4.123 19 C -0.084 4.084 20 C -0.126 4.126 21 C -0.062 4.062 22 C -0.711 4.711 23 S 2.692 3.308 24 C -0.784 4.784 25 O -0.960 6.960 26 O -0.979 6.979 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.002 0.998 34 H 0.007 0.993 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.254 0.746 39 H 0.176 0.824 40 H 0.195 0.805 41 H 0.191 0.809 42 H 0.175 0.825 43 H 0.156 0.844 44 H 0.158 0.842 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.582 7.009 24.176 26.933 hybrid contribution -0.476 0.178 -1.783 1.854 sum -10.058 7.186 22.393 25.578 Atomic orbital electron populations 1.21713 0.93192 1.01276 1.01794 1.20727 0.96989 0.96191 0.92701 1.21724 0.99901 0.94801 1.01745 1.18973 0.94232 0.94336 0.92272 1.21631 1.30256 1.12034 0.91000 0.90774 1.25941 0.95721 0.95864 1.02722 1.70129 1.38862 1.25043 1.23986 0.85512 0.77996 0.78881 0.79337 1.17875 1.21306 1.21117 1.21371 0.98186 0.95882 0.83205 1.45760 1.52345 1.32001 1.04398 1.18915 0.80567 0.84956 0.84580 1.90831 1.37772 1.27526 1.86455 1.19512 0.98948 0.97821 0.90476 1.21817 0.95444 0.93259 1.01803 1.21928 0.96071 0.99085 0.91280 1.21996 0.95874 0.94988 0.99790 1.21309 0.92962 0.94440 0.97464 1.30593 1.18973 1.22960 0.98598 1.04559 0.76152 0.77083 0.72990 1.30225 1.16078 1.17043 1.15022 1.93589 1.49292 1.83900 1.69188 1.93489 1.86269 1.86850 1.31336 0.90954 0.92497 0.94063 0.94671 0.92369 0.91108 0.99758 0.99292 0.93236 0.93318 0.92189 0.74638 0.82392 0.80527 0.80947 0.82507 0.84394 0.84184 0.83200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.72 8.05 71.98 0.58 -3.14 16 2 C -0.07 -2.34 0.54 -52.18 -0.03 -2.37 16 3 C -0.12 -3.98 8.05 71.98 0.58 -3.40 16 4 C 0.04 1.95 4.04 29.85 0.12 2.07 16 5 C -0.51 -26.66 7.65 25.60 0.20 -26.46 16 6 H 0.07 3.59 5.68 -2.91 -0.02 3.58 16 7 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 8 N -0.94 -56.52 13.29 21.45 0.28 -56.24 16 9 Si 0.96 42.86 29.54 68.60 2.03 44.89 16 10 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 11 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 C 0.14 4.62 4.56 86.38 0.39 5.01 16 14 N -0.69 -17.73 4.91 -465.95 -2.29 -20.01 16 15 C 0.52 14.55 7.35 86.79 0.64 15.19 16 16 O -0.54 -18.68 9.07 20.15 0.18 -18.50 16 17 C -0.06 -1.37 5.86 -20.09 -0.12 -1.49 16 18 C -0.10 -1.41 9.54 22.53 0.21 -1.19 16 19 C -0.07 -0.56 10.03 22.23 0.22 -0.34 16 20 C -0.11 -1.03 10.04 22.33 0.22 -0.80 16 21 C -0.04 -0.69 9.49 22.23 0.21 -0.48 16 22 C -0.62 -13.56 5.61 22.53 0.13 -13.43 16 23 S 2.51 64.81 5.14 -56.49 -0.29 64.52 16 24 C -0.63 -12.33 10.14 113.37 1.15 -11.18 16 25 O -0.96 -34.88 14.84 -118.13 -1.75 -36.64 16 26 O -0.98 -27.35 16.74 -127.65 -2.14 -29.48 16 27 H 0.07 1.54 6.86 -2.39 -0.02 1.53 16 28 H 0.06 1.88 6.62 -2.39 -0.02 1.87 16 29 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 1.99 6.62 -2.39 -0.02 1.97 16 32 H 0.07 1.63 6.86 -2.39 -0.02 1.62 16 33 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 34 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 35 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 36 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.06 2.12 8.14 -2.38 -0.02 2.11 16 38 H 0.41 7.69 4.20 -92.71 -0.39 7.30 16 39 H 0.16 1.32 6.41 -2.91 -0.02 1.30 16 40 H 0.18 0.15 8.06 -2.91 -0.02 0.13 16 41 H 0.17 0.40 8.06 -2.91 -0.02 0.37 16 42 H 0.16 2.21 7.21 -2.91 -0.02 2.19 16 43 H 0.14 3.19 5.42 -2.39 -0.01 3.17 16 44 H 0.14 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.15 1.85 8.14 -2.40 -0.02 1.83 16 Total: -1.00 -80.81 366.69 1.62 -79.19 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 0.63 Total: 14.14 kcal Atomic # 6 Polarization: -46.83 SS G_CDS: 4.97 Total: -41.86 kcal Atomic # 7 Polarization: -74.25 SS G_CDS: -2.00 Total: -76.25 kcal Atomic # 8 Polarization: -80.91 SS G_CDS: -3.71 Total: -84.62 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: 64.81 SS G_CDS: -0.29 Total: 64.52 kcal Total: -80.81 1.62 -79.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359761673.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.418 kcal (2) G-P(sol) polarization free energy of solvation -80.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds