Wall clock time and date at job start Sat Apr 11 2020 05:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47211 * 2 1 4 4 C 1.50706 * 109.46734 * 119.99849 * 2 1 3 5 5 O 1.21252 * 120.00091 * 334.72277 * 4 2 1 6 6 C 1.47171 * 119.99643 * 154.99932 * 4 2 1 7 7 C 1.39849 * 120.17017 * 359.72973 * 6 4 2 8 8 C 1.37891 * 119.82152 * 179.70091 * 7 6 4 9 9 C 1.38401 * 120.17039 * 0.56785 * 8 7 6 10 10 S 1.76204 * 119.82473 * 179.74379 * 9 8 7 11 11 O 1.42105 * 106.40274 * 23.52265 * 10 9 8 12 12 O 1.42104 * 106.40412 * 156.44022 * 10 9 8 13 13 N 1.65593 * 107.22025 * 269.98124 * 10 9 8 14 14 C 1.46499 * 120.00024 * 65.00215 * 13 10 9 15 15 C 1.53002 * 109.47389 * 165.00267 * 14 13 10 16 16 C 1.52997 * 109.47451 * 179.97438 * 15 14 13 17 17 C 1.50696 * 109.47527 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99371 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00384 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00417 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 119.99927 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.46746 * 89.99945 * 21 19 17 23 23 H 1.48494 * 109.47255 * 210.00275 * 21 19 17 24 24 H 1.48498 * 109.46909 * 330.00306 * 21 19 17 25 25 C 1.38398 * 120.35091 * 359.72759 * 9 8 7 26 26 C 1.37888 * 120.17286 * 359.97142 * 25 9 8 27 27 H 1.08994 * 109.47155 * 300.00035 * 1 2 3 28 28 H 1.09002 * 109.46869 * 60.00102 * 1 2 3 29 29 H 1.08997 * 109.47081 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46831 * 239.99642 * 2 1 3 31 31 H 1.09002 * 109.46901 * 59.99641 * 3 2 1 32 32 H 1.09001 * 109.47093 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47121 * 299.99744 * 3 2 1 34 34 H 1.07998 * 120.09189 * 359.97438 * 7 6 4 35 35 H 1.08000 * 119.91545 * 180.27379 * 8 7 6 36 36 H 0.97004 * 120.00464 * 244.99871 * 13 10 9 37 37 H 1.09005 * 109.46932 * 284.99448 * 14 13 10 38 38 H 1.08996 * 109.47350 * 44.99651 * 14 13 10 39 39 H 1.09003 * 109.46922 * 299.99472 * 15 14 13 40 40 H 1.09002 * 109.47005 * 59.99606 * 15 14 13 41 41 H 1.09008 * 109.47115 * 300.00063 * 16 15 14 42 42 H 1.09001 * 109.46759 * 59.99261 * 16 15 14 43 43 H 0.96996 * 120.00029 * 179.97438 * 20 19 17 44 44 H 1.08006 * 119.91860 * 179.97438 * 25 9 8 45 45 H 1.08001 * 120.08777 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 1.3391 -0.7661 2.2238 6 6 3.3667 -1.3313 1.2286 7 6 4.1691 -1.2690 0.0850 8 6 5.4206 -1.8479 0.0931 9 6 5.8784 -2.4993 1.2252 10 16 7.4764 -3.2417 1.2233 11 8 8.2302 -2.5690 0.2239 12 8 7.8838 -3.3208 2.5824 13 7 7.2917 -4.8015 0.6989 14 6 6.8418 -5.0657 -0.6700 15 6 7.1076 -6.5312 -1.0204 16 6 6.6372 -6.8073 -2.4498 17 6 6.8995 -8.2505 -2.7951 18 1 7.3565 -8.9052 -2.0679 19 6 6.5571 -8.7348 -4.0398 20 7 6.7865 -9.9942 -4.3414 21 14 5.7673 -7.6021 -5.2979 22 1 6.8254 -6.9554 -6.1148 23 1 4.8725 -8.3915 -6.1819 24 1 4.9761 -6.5590 -4.5970 25 6 5.0877 -2.5706 2.3588 26 6 3.8364 -1.9914 2.3685 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 3.8115 -0.7651 -0.8007 35 1 6.0434 -1.7969 -0.7878 36 1 7.4815 -5.5404 1.2982 37 1 5.7738 -4.8617 -0.7472 38 1 7.3855 -4.4223 -1.3617 39 1 8.1756 -6.7352 -0.9432 40 1 6.5638 -7.1745 -0.3286 41 1 5.5691 -6.6032 -2.5266 42 1 7.1806 -6.1638 -3.1418 43 1 6.5453 -10.3349 -5.2169 44 1 5.4517 -3.0810 3.2383 45 1 3.2203 -2.0481 3.2538 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360415042.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:29 Heat of formation + Delta-G solvation = -105.531064 kcal Electronic energy + Delta-G solvation = -26585.131438 eV Core-core repulsion = 22694.105602 eV Total energy + Delta-G solvation = -3891.025836 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.74450 -38.78179 -37.40685 -36.18930 -35.98878 -35.12262 -33.27810 -32.04880 -31.54011 -31.23544 -27.68340 -26.88486 -25.92837 -23.57186 -22.88724 -22.56534 -20.61124 -19.89050 -19.49333 -18.43735 -17.55945 -17.18766 -16.82995 -16.45312 -15.92119 -15.56290 -15.18802 -15.02857 -14.83592 -14.56621 -14.41759 -14.13252 -13.92760 -13.56009 -13.35850 -13.06360 -12.96075 -12.84023 -12.55839 -12.50619 -12.40404 -12.22892 -12.14835 -11.79267 -11.77029 -11.67822 -11.43660 -11.26521 -11.19450 -10.97614 -10.17153 -10.10795 -9.93907 -9.84145 -9.75780 -9.53923 -9.42127 -9.26510 -8.59561 -6.09675 -4.08633 -0.25166 0.27869 0.83867 1.71355 2.83576 3.15354 3.26547 3.34124 3.35555 3.35637 3.59531 4.02612 4.22327 4.32607 4.39675 4.41033 4.48428 4.57295 4.79402 4.87219 5.01250 5.09967 5.13220 5.14635 5.22229 5.23912 5.31843 5.41905 5.45749 5.47410 5.56909 5.59214 5.65093 5.69911 5.72411 5.78133 5.85732 6.27528 6.35241 6.50695 6.71086 6.95894 6.96071 7.17303 7.30518 7.71772 8.46994 8.94782 9.52061 11.03702 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009410 B = 0.002997 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2974.771915 B = 9341.547041 C =11451.942065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.141 4.141 3 C -0.143 4.143 4 C 0.398 3.602 5 O -0.440 6.440 6 C -0.119 4.119 7 C -0.095 4.095 8 C -0.031 4.031 9 C -0.649 4.649 10 S 2.692 3.308 11 O -0.952 6.952 12 O -0.961 6.961 13 N -1.110 6.110 14 C 0.109 3.891 15 C -0.108 4.108 16 C -0.013 4.013 17 C -0.523 4.523 18 H 0.072 0.928 19 C 0.066 3.934 20 N -0.902 5.902 21 Si 0.880 3.120 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.265 1.265 25 C -0.029 4.029 26 C -0.086 4.086 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.143 0.857 35 H 0.150 0.850 36 H 0.420 0.580 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.018 0.982 42 H 0.015 0.985 43 H 0.264 0.736 44 H 0.148 0.852 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.825 22.479 10.665 26.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.160 4.160 3 C -0.200 4.200 4 C 0.275 3.725 5 O -0.314 6.314 6 C -0.120 4.120 7 C -0.114 4.114 8 C -0.050 4.050 9 C -0.734 4.734 10 S 2.780 3.220 11 O -0.942 6.942 12 O -0.951 6.951 13 N -0.872 5.872 14 C -0.017 4.017 15 C -0.147 4.147 16 C -0.052 4.052 17 C -0.561 4.561 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.541 5.541 21 Si 0.708 3.292 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.190 1.190 25 C -0.048 4.048 26 C -0.104 4.104 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.120 0.880 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.161 0.839 35 H 0.168 0.832 36 H 0.256 0.744 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.036 0.964 42 H 0.034 0.966 43 H 0.073 0.927 44 H 0.166 0.834 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.505 22.890 11.167 26.851 hybrid contribution -1.078 0.059 -0.703 1.288 sum -9.583 22.949 10.464 26.981 Atomic orbital electron populations 1.21720 0.92583 1.02781 1.02807 1.21650 0.98472 0.98135 0.97767 1.21754 1.01648 0.93309 1.03286 1.22645 0.84928 0.76083 0.88877 1.90524 1.56604 1.49381 1.34853 1.20870 0.96196 0.99569 0.95356 1.21611 0.93806 0.98337 0.97658 1.21015 0.95351 0.92082 0.96591 1.31410 1.25910 1.15022 1.01062 1.01999 0.73673 0.72974 0.73333 1.93605 1.66724 1.73604 1.60249 1.93592 1.80624 1.86227 1.34624 1.55458 1.84759 1.24506 1.22511 1.21654 0.98863 1.01157 0.79984 1.21674 1.01955 0.91224 0.99888 1.19551 0.96258 0.97910 0.91440 1.21096 1.40989 0.93828 1.00155 0.90959 1.25041 0.95271 0.94950 0.98261 1.69910 1.48128 1.14109 1.21974 0.86774 0.79816 0.81113 0.81544 1.20178 1.21399 1.19005 1.20949 0.92661 0.94746 0.96460 1.21548 0.95671 0.95189 0.98040 0.91592 0.91532 0.92212 0.88042 0.91938 0.91751 0.90863 0.83896 0.83222 0.74423 0.92096 0.90367 0.91656 0.91891 0.96382 0.96631 0.92669 0.83445 0.83956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 8.73 37.16 0.32 -0.59 16 2 C -0.14 -0.90 2.55 -91.77 -0.23 -1.13 16 3 C -0.14 -0.73 9.18 37.16 0.34 -0.39 16 4 C 0.40 3.63 6.23 -30.68 -0.19 3.44 16 5 O -0.44 -5.17 16.09 5.58 0.09 -5.08 16 6 C -0.12 -1.11 5.87 -105.07 -0.62 -1.72 16 7 C -0.10 -0.78 9.37 -39.11 -0.37 -1.15 16 8 C -0.03 -0.30 9.50 -39.65 -0.38 -0.68 16 9 C -0.65 -6.86 5.96 -39.46 -0.24 -7.09 16 10 S 2.69 32.28 5.73 -107.50 -0.62 31.67 16 11 O -0.95 -13.85 16.74 -57.17 -0.96 -14.81 16 12 O -0.96 -13.29 17.27 -57.17 -0.99 -14.28 16 13 N -1.11 -12.97 6.00 -10.61 -0.06 -13.04 16 14 C 0.11 1.49 6.22 -4.04 -0.03 1.46 16 15 C -0.11 -1.88 5.29 -26.73 -0.14 -2.03 16 16 C -0.01 -0.29 4.04 -27.89 -0.11 -0.41 16 17 C -0.52 -14.30 9.66 -34.44 -0.33 -14.63 16 18 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 19 C 0.07 1.87 5.47 -17.82 -0.10 1.78 16 20 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 21 Si 0.88 20.89 27.47 -169.99 -4.67 16.22 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 25 C -0.03 -0.29 9.50 -39.65 -0.38 -0.66 16 26 C -0.09 -0.83 9.60 -39.11 -0.38 -1.21 16 27 H 0.07 0.48 7.87 -51.93 -0.41 0.07 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.10 0.49 6.73 -51.93 -0.35 0.14 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.14 0.75 6.47 -52.49 -0.34 0.41 16 35 H 0.15 1.25 7.60 -52.49 -0.40 0.85 16 36 H 0.42 4.27 8.65 -34.47 -0.30 3.97 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.08 1.05 7.75 -51.93 -0.40 0.65 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.02 0.39 7.20 -51.92 -0.37 0.02 16 42 H 0.02 0.33 7.57 -51.93 -0.39 -0.06 16 43 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.15 1.24 7.60 -52.48 -0.40 0.84 16 45 H 0.14 1.25 7.65 -52.49 -0.40 0.85 16 LS Contribution 387.70 15.07 5.84 5.84 Total: -1.00 -35.04 387.70 -10.14 -45.18 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -6.73 Total: -0.19 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: -2.82 Total: -25.02 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.71 Total: -39.53 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -1.85 Total: -34.17 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.22 kcal Atomic # 16 Polarization: 32.28 SS G_CDS: -0.62 Total: 31.67 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.04 -10.14 -45.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360415042.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.351 kcal (2) G-P(sol) polarization free energy of solvation -35.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds