Wall clock time and date at job start Sat Apr 11 2020 05:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47211 * 2 1 4 4 C 1.50706 * 109.46734 * 119.99849 * 2 1 3 5 5 O 1.21252 * 120.00091 * 334.72277 * 4 2 1 6 6 C 1.47171 * 119.99643 * 154.99932 * 4 2 1 7 7 C 1.39849 * 120.17017 * 359.72973 * 6 4 2 8 8 C 1.37891 * 119.82152 * 179.70091 * 7 6 4 9 9 C 1.38401 * 120.17039 * 0.56785 * 8 7 6 10 10 S 1.76204 * 119.82473 * 179.74379 * 9 8 7 11 11 O 1.42105 * 106.40274 * 23.52265 * 10 9 8 12 12 O 1.42104 * 106.40412 * 156.44022 * 10 9 8 13 13 N 1.65593 * 107.22025 * 269.98124 * 10 9 8 14 14 C 1.46499 * 120.00024 * 65.00215 * 13 10 9 15 15 C 1.53002 * 109.47389 * 165.00267 * 14 13 10 16 16 C 1.52997 * 109.47451 * 179.97438 * 15 14 13 17 17 C 1.50696 * 109.47527 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99371 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00384 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00417 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 119.99927 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.46746 * 89.99945 * 21 19 17 23 23 H 1.48494 * 109.47255 * 210.00275 * 21 19 17 24 24 H 1.48498 * 109.46909 * 330.00306 * 21 19 17 25 25 C 1.38398 * 120.35091 * 359.72759 * 9 8 7 26 26 C 1.37888 * 120.17286 * 359.97142 * 25 9 8 27 27 H 1.08994 * 109.47155 * 300.00035 * 1 2 3 28 28 H 1.09002 * 109.46869 * 60.00102 * 1 2 3 29 29 H 1.08997 * 109.47081 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46831 * 239.99642 * 2 1 3 31 31 H 1.09002 * 109.46901 * 59.99641 * 3 2 1 32 32 H 1.09001 * 109.47093 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47121 * 299.99744 * 3 2 1 34 34 H 1.07998 * 120.09189 * 359.97438 * 7 6 4 35 35 H 1.08000 * 119.91545 * 180.27379 * 8 7 6 36 36 H 0.97004 * 120.00464 * 244.99871 * 13 10 9 37 37 H 1.09005 * 109.46932 * 284.99448 * 14 13 10 38 38 H 1.08996 * 109.47350 * 44.99651 * 14 13 10 39 39 H 1.09003 * 109.46922 * 299.99472 * 15 14 13 40 40 H 1.09002 * 109.47005 * 59.99606 * 15 14 13 41 41 H 1.09008 * 109.47115 * 300.00063 * 16 15 14 42 42 H 1.09001 * 109.46759 * 59.99261 * 16 15 14 43 43 H 0.96996 * 120.00029 * 179.97438 * 20 19 17 44 44 H 1.08006 * 119.91860 * 179.97438 * 25 9 8 45 45 H 1.08001 * 120.08777 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 1.3391 -0.7661 2.2238 6 6 3.3667 -1.3313 1.2286 7 6 4.1691 -1.2690 0.0850 8 6 5.4206 -1.8479 0.0931 9 6 5.8784 -2.4993 1.2252 10 16 7.4764 -3.2417 1.2233 11 8 8.2302 -2.5690 0.2239 12 8 7.8838 -3.3208 2.5824 13 7 7.2917 -4.8015 0.6989 14 6 6.8418 -5.0657 -0.6700 15 6 7.1076 -6.5312 -1.0204 16 6 6.6372 -6.8073 -2.4498 17 6 6.8995 -8.2505 -2.7951 18 1 7.3565 -8.9052 -2.0679 19 6 6.5571 -8.7348 -4.0398 20 7 6.7865 -9.9942 -4.3414 21 14 5.7673 -7.6021 -5.2979 22 1 6.8254 -6.9554 -6.1148 23 1 4.8725 -8.3915 -6.1819 24 1 4.9761 -6.5590 -4.5970 25 6 5.0877 -2.5706 2.3588 26 6 3.8364 -1.9914 2.3685 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 3.8115 -0.7651 -0.8007 35 1 6.0434 -1.7969 -0.7878 36 1 7.4815 -5.5404 1.2982 37 1 5.7738 -4.8617 -0.7472 38 1 7.3855 -4.4223 -1.3617 39 1 8.1756 -6.7352 -0.9432 40 1 6.5638 -7.1745 -0.3286 41 1 5.5691 -6.6032 -2.5266 42 1 7.1806 -6.1638 -3.1418 43 1 6.5453 -10.3349 -5.2169 44 1 5.4517 -3.0810 3.2383 45 1 3.2203 -2.0481 3.2538 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360415042.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:27 Heat of formation + Delta-G solvation = -129.397955 kcal Electronic energy + Delta-G solvation = -26586.166385 eV Core-core repulsion = 22694.105602 eV Total energy + Delta-G solvation = -3892.060782 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.43343 -39.49880 -38.44626 -37.40801 -37.03177 -35.65816 -35.09923 -32.95873 -32.75031 -32.23131 -28.52760 -28.10745 -26.60447 -24.50641 -24.16937 -23.22268 -22.11437 -20.70443 -20.28122 -19.26639 -18.95799 -18.44251 -17.89070 -17.34754 -16.82834 -16.30090 -16.21726 -16.08718 -15.86087 -15.67373 -15.42366 -15.01818 -14.78279 -14.57313 -14.35219 -14.05667 -14.01000 -13.77791 -13.62448 -13.31802 -13.28277 -13.27203 -13.20897 -12.99202 -12.74594 -12.68034 -12.42014 -12.15860 -12.09206 -11.91039 -11.79714 -11.61502 -11.48329 -11.27405 -10.77815 -10.71689 -10.60715 -10.43790 -10.22028 -8.24777 -6.29365 -1.00487 -0.64912 0.14788 1.01345 1.42053 1.43665 1.55177 1.93617 2.39869 2.41398 2.68746 2.74660 3.11462 3.19412 3.56832 3.75320 3.77543 4.01966 4.02280 4.03599 4.13697 4.19798 4.28824 4.41985 4.45460 4.50370 4.68519 4.73032 4.78868 4.82408 4.86989 4.88514 4.91688 4.95767 5.02984 5.10139 5.11150 5.13871 5.26375 5.28668 5.56896 5.58830 5.64476 5.71272 6.03441 6.30469 6.32967 6.79972 7.35491 8.92128 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009410 B = 0.002997 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2974.771915 B = 9341.547041 C =11451.942065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C -0.142 4.142 4 C 0.399 3.601 5 O -0.475 6.475 6 C -0.127 4.127 7 C -0.084 4.084 8 C -0.040 4.040 9 C -0.653 4.653 10 S 2.712 3.288 11 O -0.977 6.977 12 O -0.982 6.982 13 N -1.108 6.108 14 C 0.115 3.885 15 C -0.104 4.104 16 C -0.014 4.014 17 C -0.533 4.533 18 H 0.030 0.970 19 C -0.002 4.002 20 N -0.956 5.956 21 Si 0.952 3.048 22 H -0.267 1.267 23 H -0.290 1.290 24 H -0.235 1.235 25 C -0.037 4.037 26 C -0.097 4.097 27 H 0.051 0.949 28 H 0.086 0.914 29 H 0.050 0.950 30 H 0.126 0.874 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.178 0.822 35 H 0.165 0.835 36 H 0.427 0.573 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.031 0.969 42 H 0.026 0.974 43 H 0.265 0.735 44 H 0.155 0.845 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.094 25.318 9.273 28.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.158 4.158 3 C -0.199 4.199 4 C 0.278 3.722 5 O -0.351 6.351 6 C -0.128 4.128 7 C -0.103 4.103 8 C -0.059 4.059 9 C -0.741 4.741 10 S 2.803 3.197 11 O -0.967 6.967 12 O -0.973 6.973 13 N -0.870 5.870 14 C -0.010 4.010 15 C -0.143 4.143 16 C -0.053 4.053 17 C -0.571 4.571 18 H 0.048 0.952 19 C -0.198 4.198 20 N -0.597 5.597 21 Si 0.775 3.225 22 H -0.193 1.193 23 H -0.216 1.216 24 H -0.158 1.158 25 C -0.056 4.056 26 C -0.116 4.116 27 H 0.070 0.930 28 H 0.105 0.895 29 H 0.069 0.931 30 H 0.143 0.857 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.196 0.804 35 H 0.182 0.818 36 H 0.263 0.737 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.049 0.951 42 H 0.044 0.956 43 H 0.073 0.927 44 H 0.173 0.827 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.735 25.730 9.799 29.203 hybrid contribution -0.672 -0.875 -0.183 1.119 sum -10.407 24.854 9.616 28.610 Atomic orbital electron populations 1.21737 0.92849 1.02299 1.03098 1.21742 0.98267 0.98773 0.96977 1.21783 1.02069 0.92334 1.03695 1.23121 0.84466 0.75311 0.89330 1.90518 1.57455 1.50827 1.36335 1.21088 0.96596 0.99445 0.95687 1.21949 0.92827 0.97259 0.98244 1.21321 0.96092 0.91851 0.96633 1.31116 1.24911 1.16043 1.02042 1.01161 0.73811 0.72474 0.72277 1.93568 1.68192 1.74101 1.60864 1.93562 1.81552 1.86472 1.35673 1.55287 1.84914 1.24831 1.22010 1.21498 1.00432 0.98250 0.80849 1.21508 1.01234 0.94147 0.97406 1.19527 0.97200 0.94252 0.94283 1.21539 1.39909 0.96312 0.99350 0.95198 1.26107 0.96119 0.96616 1.00954 1.70087 1.50202 1.16648 1.22797 0.85634 0.79130 0.79331 0.78429 1.19252 1.21578 1.15753 1.21078 0.92766 0.95053 0.96744 1.21685 0.95727 0.95533 0.98663 0.93019 0.89529 0.93104 0.85664 0.93084 0.91078 0.88970 0.80429 0.81767 0.73679 0.89910 0.89708 0.92591 0.91976 0.95098 0.95591 0.92654 0.82689 0.83837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.73 71.98 0.63 -0.93 16 2 C -0.14 -1.37 2.55 -11.54 -0.03 -1.40 16 3 C -0.14 -1.03 9.18 71.98 0.66 -0.37 16 4 C 0.40 6.60 6.23 28.04 0.17 6.77 16 5 O -0.48 -11.00 16.09 -2.94 -0.05 -11.05 16 6 C -0.13 -2.09 5.87 -20.15 -0.12 -2.20 16 7 C -0.08 -1.08 9.37 22.58 0.21 -0.87 16 8 C -0.04 -0.63 9.50 22.23 0.21 -0.42 16 9 C -0.65 -12.47 5.96 22.35 0.13 -12.33 16 10 S 2.71 60.98 5.73 -56.49 -0.32 60.66 16 11 O -0.98 -26.77 16.74 -128.00 -2.14 -28.91 16 12 O -0.98 -26.40 17.27 -128.00 -2.21 -28.61 16 13 N -1.11 -23.97 6.00 -187.49 -1.12 -25.10 16 14 C 0.12 2.84 6.22 86.38 0.54 3.38 16 15 C -0.10 -3.47 5.29 30.59 0.16 -3.31 16 16 C -0.01 -0.60 4.04 29.85 0.12 -0.48 16 17 C -0.53 -29.49 9.66 25.60 0.25 -29.24 16 18 H 0.03 1.83 7.99 -2.91 -0.02 1.81 16 19 C 0.00 -0.11 5.47 84.65 0.46 0.36 16 20 N -0.96 -59.27 13.96 21.45 0.30 -58.97 16 21 Si 0.95 41.97 27.47 68.60 1.88 43.85 16 22 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 23 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 24 H -0.23 -9.11 6.54 99.48 0.65 -8.46 16 25 C -0.04 -0.69 9.50 22.22 0.21 -0.48 16 26 C -0.10 -1.78 9.60 22.58 0.22 -1.56 16 27 H 0.05 0.71 7.87 -2.39 -0.02 0.69 16 28 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.13 0.65 6.73 -2.39 -0.02 0.63 16 31 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.18 0.93 6.47 -2.91 -0.02 0.92 16 35 H 0.16 2.11 7.60 -2.91 -0.02 2.09 16 36 H 0.43 8.17 8.65 -96.74 -0.84 7.33 16 37 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.08 2.01 7.75 -2.39 -0.02 2.00 16 39 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.03 1.23 7.20 -2.38 -0.02 1.21 16 42 H 0.03 1.04 7.57 -2.39 -0.02 1.03 16 43 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 44 H 0.16 2.49 7.60 -2.91 -0.02 2.47 16 45 H 0.14 2.50 7.65 -2.91 -0.02 2.48 16 Total: -1.00 -77.39 387.70 0.27 -77.12 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.10 Total: 14.10 kcal Atomic # 6 Polarization: -46.92 SS G_CDS: 3.83 Total: -43.09 kcal Atomic # 7 Polarization: -83.24 SS G_CDS: -0.83 Total: -84.06 kcal Atomic # 8 Polarization: -64.17 SS G_CDS: -4.40 Total: -68.57 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 1.88 Total: 43.85 kcal Atomic # 16 Polarization: 60.98 SS G_CDS: -0.32 Total: 60.66 kcal Total: -77.39 0.27 -77.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360415042.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.278 kcal (2) G-P(sol) polarization free energy of solvation -77.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds