Wall clock time and date at job start Sat Apr 11 2020 05:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35897 * 116.99948 * 2 1 4 4 C 1.38760 * 120.05509 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.94138 * 180.02562 * 4 3 2 6 6 C 1.38284 * 120.05541 * 0.02906 * 5 4 3 7 7 C 1.38247 * 120.11475 * 359.69634 * 6 5 4 8 8 C 1.38162 * 120.05018 * 0.55822 * 7 6 5 9 9 C 1.50703 * 120.02524 * 179.74620 * 8 7 6 10 10 C 1.52999 * 115.56291 * 260.36527 * 9 8 7 11 11 C 1.53003 * 117.50082 * 46.05536 * 9 8 7 12 12 C 1.52993 * 60.00067 * 107.48940 * 11 9 8 13 13 H 1.09007 * 117.50192 * 252.48945 * 12 11 9 14 14 N 1.46502 * 117.50053 * 107.49232 * 12 11 9 15 15 S 1.65594 * 120.00095 * 146.11491 * 14 12 11 16 16 O 1.42101 * 104.27660 * 181.34728 * 15 14 12 17 17 O 1.42097 * 104.27864 * 309.20159 * 15 14 12 18 18 C 1.81397 * 104.45161 * 65.27654 * 15 14 12 19 19 C 1.52999 * 109.47227 * 180.02562 * 18 15 14 20 20 C 1.50700 * 109.47003 * 180.02562 * 19 18 15 21 21 H 1.07998 * 119.99988 * 359.97438 * 20 19 18 22 22 C 1.37881 * 119.99545 * 179.97438 * 20 19 18 23 23 N 1.31512 * 120.00366 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99645 * 179.97438 * 22 20 19 25 25 H 1.48493 * 109.46978 * 90.00281 * 24 22 20 26 26 H 1.48503 * 109.46915 * 210.00291 * 24 22 20 27 27 H 1.48504 * 109.46993 * 329.99920 * 24 22 20 28 28 H 1.09000 * 109.47110 * 299.99771 * 1 2 3 29 29 H 1.08997 * 109.47603 * 60.00141 * 1 2 3 30 30 H 1.09004 * 109.47344 * 180.02562 * 1 2 3 31 31 H 1.07991 * 120.02716 * 0.04937 * 4 3 2 32 32 H 1.07996 * 119.96987 * 179.97438 * 5 4 3 33 33 H 1.08002 * 119.94316 * 180.02562 * 6 5 4 34 34 H 1.08003 * 119.97096 * 180.27831 * 7 6 5 35 35 H 1.09006 * 109.47317 * 276.73056 * 10 9 8 36 36 H 1.09004 * 109.46928 * 36.73059 * 10 9 8 37 37 H 1.09000 * 109.47331 * 156.72671 * 10 9 8 38 38 H 1.09003 * 117.49709 * 359.97438 * 11 9 8 39 39 H 1.08996 * 117.52159 * 214.97556 * 11 9 8 40 40 H 0.97004 * 119.99822 * 326.39038 * 14 12 11 41 41 H 1.09001 * 109.46851 * 299.99850 * 18 15 14 42 42 H 1.09004 * 109.46876 * 59.99943 * 18 15 14 43 43 H 1.09001 * 109.47074 * 299.99703 * 19 18 15 44 44 H 1.08997 * 109.47529 * 59.99547 * 19 18 15 45 45 H 0.97003 * 120.00169 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9208 3.6048 -0.0011 6 6 3.3018 3.6757 -0.0017 7 6 4.0559 2.5171 0.0046 8 6 3.4310 1.2849 -0.0002 9 6 4.2536 0.0222 0.0009 10 6 4.4260 -0.6546 -1.3604 11 6 5.4244 -0.0575 0.9826 12 6 4.1596 -0.8813 1.2321 13 1 3.5028 -0.5626 2.0416 14 7 4.2413 -2.3282 1.0173 15 16 3.3596 -3.3576 1.9686 16 8 3.7096 -4.6530 1.5012 17 8 3.6608 -2.9519 3.2967 18 6 1.6321 -2.9801 1.5640 19 6 0.7073 -3.8769 2.3894 20 6 -0.7279 -3.5636 2.0528 21 1 -0.9574 -2.8009 1.3234 22 6 -1.7479 -4.2509 2.6761 23 7 -1.4684 -5.1793 3.5646 24 14 -3.5269 -3.8621 2.2593 25 1 -3.9706 -4.7218 1.1328 26 1 -4.3812 -4.1212 3.4460 27 1 -3.6430 -2.4343 1.8680 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 0.2128 2.3203 -0.0002 32 1 1.3339 4.5114 -0.0019 33 1 3.7921 4.6380 -0.0017 34 1 5.1343 2.5752 0.0086 35 1 3.5567 -1.2786 -1.5687 36 1 4.5210 0.1063 -2.1351 37 1 5.3230 -1.2738 -1.3474 38 1 5.5999 0.8036 1.6275 39 1 6.3176 -0.5919 0.6591 40 1 4.8150 -2.6834 0.3204 41 1 1.4250 -1.9350 1.7946 42 1 1.4601 -3.1590 0.5026 43 1 0.9143 -4.9220 2.1593 44 1 0.8794 -3.6976 3.4507 45 1 -2.1860 -5.6630 4.0028 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360425535.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:42 Heat of formation + Delta-G solvation = -92.666508 kcal Electronic energy + Delta-G solvation = -28391.366559 eV Core-core repulsion = 24500.898572 eV Total energy + Delta-G solvation = -3890.467987 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.35672 -39.33666 -38.17040 -37.96287 -37.03246 -35.86546 -33.95096 -33.09583 -31.23848 -30.86972 -29.24505 -28.04179 -27.55315 -24.14612 -23.51648 -23.40293 -22.47823 -20.60454 -20.32535 -19.18418 -18.80396 -18.28080 -17.41449 -17.01641 -16.88868 -16.64057 -16.58745 -16.47870 -16.13996 -15.38786 -15.11847 -15.05294 -14.53666 -14.46685 -14.01451 -13.86005 -13.69533 -13.53143 -13.37463 -13.24053 -13.14070 -13.12153 -12.91850 -12.77265 -12.75667 -12.63907 -12.51259 -12.32136 -12.22218 -12.10809 -11.91772 -11.74413 -11.58306 -11.12610 -10.76835 -10.61779 -10.05095 -9.59443 -8.98320 -8.22486 -6.35453 -0.67713 0.42864 0.58169 1.41488 1.43355 1.53453 1.78734 2.39221 2.48161 2.71371 2.88043 2.88370 3.11499 3.26510 3.67918 3.76421 3.89886 3.96761 4.05771 4.13538 4.18494 4.20115 4.29876 4.33502 4.42451 4.51470 4.60862 4.77280 4.80890 4.87557 4.90730 4.94912 4.98114 5.03321 5.21059 5.27972 5.30981 5.33066 5.39963 5.51060 5.58585 5.68092 5.72766 5.96139 6.09442 6.11560 6.55817 6.77645 7.33915 8.90143 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010483 B = 0.004499 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.438488 B = 6221.546976 C = 8317.062938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.319 6.319 3 C 0.117 3.883 4 C -0.222 4.222 5 C -0.087 4.087 6 C -0.162 4.162 7 C -0.074 4.074 8 C -0.099 4.099 9 C -0.076 4.076 10 C -0.109 4.109 11 C -0.155 4.155 12 C 0.081 3.919 13 H 0.118 0.882 14 N -1.073 6.073 15 S 2.617 3.383 16 O -0.998 6.998 17 O -0.998 6.998 18 C -0.575 4.575 19 C 0.023 3.977 20 C -0.527 4.527 21 H 0.081 0.919 22 C -0.004 4.004 23 N -0.937 5.937 24 Si 0.969 3.031 25 H -0.272 1.272 26 H -0.287 1.287 27 H -0.252 1.252 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.134 0.866 32 H 0.143 0.857 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.425 0.575 41 H 0.136 0.864 42 H 0.141 0.859 43 H 0.005 0.995 44 H 0.004 0.996 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.699 19.976 -11.984 25.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.232 6.232 3 C 0.071 3.929 4 C -0.241 4.241 5 C -0.105 4.105 6 C -0.180 4.180 7 C -0.092 4.092 8 C -0.100 4.100 9 C -0.078 4.078 10 C -0.166 4.166 11 C -0.194 4.194 12 C -0.028 4.028 13 H 0.136 0.864 14 N -0.830 5.830 15 S 2.714 3.286 16 O -0.989 6.989 17 O -0.988 6.988 18 C -0.708 4.708 19 C -0.016 4.016 20 C -0.566 4.566 21 H 0.099 0.901 22 C -0.202 4.202 23 N -0.576 5.576 24 Si 0.793 3.207 25 H -0.198 1.198 26 H -0.213 1.213 27 H -0.176 1.176 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.117 0.883 31 H 0.152 0.848 32 H 0.161 0.839 33 H 0.165 0.835 34 H 0.167 0.833 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.262 0.738 41 H 0.154 0.846 42 H 0.159 0.841 43 H 0.023 0.977 44 H 0.022 0.978 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.990 19.053 -11.106 24.640 hybrid contribution -1.649 -0.130 -0.323 1.686 sum 9.341 18.923 -11.428 23.999 Atomic orbital electron populations 1.23233 0.77734 1.04739 1.01879 1.86123 1.21905 1.26908 1.88295 1.19215 0.92281 0.84837 0.96521 1.21484 1.00767 0.92621 1.09233 1.21263 0.95372 0.97183 0.96660 1.21351 0.93816 0.99203 1.03585 1.21088 1.01082 0.90236 0.96754 1.18555 0.89552 0.94453 1.07486 1.20435 0.99992 0.94450 0.92941 1.21252 1.02104 1.00070 0.93169 1.23797 0.92479 1.02009 1.01160 1.21501 1.03491 0.77788 0.99997 0.86417 1.54758 1.60258 1.15202 1.52832 1.04536 0.77706 0.72715 0.73633 1.93503 1.83420 1.39999 1.81935 1.93502 1.83803 1.83081 1.38395 1.30254 1.19225 1.10356 1.10969 1.18820 0.95680 0.93327 0.93765 1.21468 0.90310 1.20923 1.23913 0.90114 1.26085 1.04597 0.94747 0.94730 1.70112 1.34373 1.25057 1.28103 0.85383 0.78130 0.79539 0.77651 1.19798 1.21307 1.17605 0.92420 0.91178 0.88328 0.84787 0.83907 0.83515 0.83315 0.92637 0.91415 0.90795 0.86602 0.86320 0.73849 0.84615 0.84130 0.97711 0.97810 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.81 113.37 1.11 1.56 16 2 O -0.32 -8.31 9.34 -92.39 -0.86 -9.18 16 3 C 0.12 2.74 6.63 22.51 0.15 2.89 16 4 C -0.22 -4.49 9.04 22.37 0.20 -4.29 16 5 C -0.09 -1.41 10.04 22.25 0.22 -1.19 16 6 C -0.16 -2.37 10.04 22.28 0.22 -2.15 16 7 C -0.07 -1.19 9.32 22.25 0.21 -0.98 16 8 C -0.10 -2.06 5.00 -19.77 -0.10 -2.16 16 9 C -0.08 -1.50 1.78 -52.93 -0.09 -1.59 16 10 C -0.11 -1.93 9.00 71.98 0.65 -1.28 16 11 C -0.16 -2.71 9.42 30.59 0.29 -2.42 16 12 C 0.08 1.97 5.73 44.99 0.26 2.23 16 13 H 0.12 3.25 8.09 -2.38 -0.02 3.23 16 14 N -1.07 -28.73 5.57 -169.39 -0.94 -29.67 16 15 S 2.62 98.47 5.44 -56.49 -0.31 98.17 16 16 O -1.00 -43.16 18.08 -127.65 -2.31 -45.47 16 17 O -1.00 -43.95 17.79 -127.65 -2.27 -46.22 16 18 C -0.58 -22.55 6.02 71.98 0.43 -22.12 16 19 C 0.02 1.21 4.98 29.85 0.15 1.35 16 20 C -0.53 -28.40 9.11 25.60 0.23 -28.17 16 21 H 0.08 3.90 7.33 -2.91 -0.02 3.88 16 22 C 0.00 -0.20 5.46 84.66 0.46 0.27 16 23 N -0.94 -56.80 13.29 21.45 0.28 -56.52 16 24 Si 0.97 42.32 29.54 68.60 2.03 44.35 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 26 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 27 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 28 H 0.06 1.31 7.66 -2.39 -0.02 1.29 16 29 H 0.07 1.32 7.66 -2.39 -0.02 1.30 16 30 H 0.10 2.56 7.73 -2.38 -0.02 2.54 16 31 H 0.13 2.41 6.30 -2.92 -0.02 2.40 16 32 H 0.14 1.62 8.06 -2.91 -0.02 1.59 16 33 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 34 H 0.15 1.69 7.93 -2.91 -0.02 1.67 16 35 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.07 1.09 8.10 -2.39 -0.02 1.07 16 37 H 0.07 1.06 7.54 -2.39 -0.02 1.04 16 38 H 0.12 1.73 8.01 -2.39 -0.02 1.71 16 39 H 0.12 1.69 8.06 -2.39 -0.02 1.67 16 40 H 0.42 9.22 8.02 -96.74 -0.78 8.45 16 41 H 0.14 4.91 7.80 -2.39 -0.02 4.89 16 42 H 0.14 4.91 8.14 -2.39 -0.02 4.89 16 43 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 44 H 0.00 0.20 8.14 -2.39 -0.02 0.19 16 45 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -76.03 388.98 0.23 -75.80 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: 0.22 Total: 26.79 kcal Atomic # 6 Polarization: -62.45 SS G_CDS: 4.40 Total: -58.05 kcal Atomic # 7 Polarization: -85.53 SS G_CDS: -0.66 Total: -86.19 kcal Atomic # 8 Polarization: -95.43 SS G_CDS: -5.44 Total: -100.87 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 16 Polarization: 98.47 SS G_CDS: -0.31 Total: 98.17 kcal Total: -76.03 0.23 -75.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360425535.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.867 kcal (2) G-P(sol) polarization free energy of solvation -76.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds