Wall clock time and date at job start Sat Apr 11 2020 05:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42902 * 114.00034 * 2 1 4 4 C 1.53003 * 109.47196 * 180.02562 * 3 2 1 5 5 C 1.53001 * 110.88669 * 56.11971 * 4 3 2 6 6 C 1.55155 * 111.00477 * 292.19495 * 4 3 2 7 7 C 1.54317 * 102.94267 * 206.42436 * 6 4 3 8 8 N 1.47028 * 107.27307 * 22.19238 * 7 6 4 9 9 S 1.65600 * 125.64772 * 181.02571 * 8 7 6 10 10 O 1.42098 * 106.40468 * 23.58064 * 9 8 7 11 11 O 1.42098 * 106.39969 * 156.50057 * 9 8 7 12 12 C 1.76196 * 107.21706 * 270.03882 * 9 8 7 13 13 C 1.38641 * 119.75032 * 269.72647 * 12 9 8 14 14 C 1.37621 * 120.24785 * 179.76189 * 13 12 9 15 15 C 1.40715 * 119.74470 * 0.49248 * 14 13 12 16 16 C 1.41398 * 120.24546 * 179.78921 * 15 14 13 17 17 H 1.08002 * 119.99609 * 330.21495 * 16 15 14 18 18 C 1.39941 * 119.99994 * 150.21680 * 16 15 14 19 19 N 1.30823 * 119.99970 * 161.72068 * 18 16 15 20 20 Si 1.86801 * 120.00156 * 341.71618 * 18 16 15 21 21 H 1.48500 * 109.47100 * 95.41401 * 20 18 16 22 22 H 1.48498 * 109.46908 * 215.41467 * 20 18 16 23 23 H 1.48501 * 109.47048 * 335.41372 * 20 18 16 24 24 C 1.40720 * 119.51181 * 359.75914 * 15 14 13 25 25 C 1.37613 * 119.74622 * 0.02562 * 24 15 14 26 26 C 1.47426 * 108.70119 * 1.05903 * 8 7 6 27 27 H 1.08999 * 109.47435 * 59.99716 * 1 2 3 28 28 H 1.09001 * 109.47286 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47035 * 300.00230 * 1 2 3 30 30 H 1.09005 * 109.47027 * 299.99854 * 3 2 1 31 31 H 1.08993 * 109.47377 * 59.99498 * 3 2 1 32 32 H 1.09003 * 109.47292 * 60.70127 * 5 4 3 33 33 H 1.08994 * 109.47211 * 180.69949 * 5 4 3 34 34 H 1.09004 * 109.46702 * 300.69881 * 5 4 3 35 35 H 1.09003 * 110.72070 * 324.78455 * 6 4 3 36 36 H 1.08999 * 110.71904 * 88.06079 * 6 4 3 37 37 H 1.09006 * 109.88573 * 262.77588 * 7 6 4 38 38 H 1.09003 * 109.88350 * 141.60783 * 7 6 4 39 39 H 1.07999 * 119.87648 * 0.02562 * 13 12 9 40 40 H 1.08002 * 120.12899 * 180.28027 * 14 13 12 41 41 H 0.96997 * 120.00162 * 179.97438 * 19 18 16 42 42 H 1.07992 * 120.12671 * 179.97438 * 24 15 14 43 43 H 1.07995 * 119.88123 * 179.97438 * 25 24 15 44 44 H 1.09004 * 110.36382 * 217.03685 * 26 8 7 45 45 H 1.08995 * 110.45778 * 94.75807 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.0158 0.3474 -1.1877 6 6 4.0472 0.5951 1.3402 7 6 5.4778 1.1640 1.4443 8 7 5.5323 2.3659 0.5991 9 16 6.8655 3.3188 0.3611 10 8 7.9962 2.5016 0.6311 11 8 6.6663 3.9852 -0.8780 12 6 6.8442 4.5658 1.6057 13 6 6.2004 5.7693 1.3628 14 6 6.1733 6.7485 2.3294 15 6 6.8111 6.5284 3.5642 16 6 6.7937 7.5288 4.5633 17 1 6.7485 8.5709 4.2831 18 6 6.8349 7.1687 5.9149 19 7 7.1755 8.0526 6.8172 20 14 6.4034 5.4260 6.4308 21 1 7.6470 4.6239 6.5539 22 1 5.7024 5.4565 7.7396 23 1 5.5176 4.8123 5.4091 24 6 7.4661 5.3049 3.7978 25 6 7.4767 4.3383 2.8183 26 6 4.2031 2.5825 -0.0008 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 1.6885 1.8464 0.8899 32 1 3.7121 0.8279 -2.1178 33 1 5.1023 0.2660 -1.1589 34 1 3.5752 -0.6480 -1.1322 35 1 3.4335 0.9400 2.1724 36 1 4.0673 -0.4940 1.2998 37 1 6.1970 0.4268 1.0871 38 1 5.6974 1.4282 2.4788 39 1 5.7147 5.9375 0.4129 40 1 5.6673 7.6836 2.1398 41 1 7.2037 7.8032 7.7542 42 1 7.9592 5.1256 4.7416 43 1 7.9790 3.3988 2.9951 44 1 4.3032 2.9551 -1.0203 45 1 3.6222 3.2804 0.6022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381800942.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:59 Heat of formation + Delta-G solvation = -108.729633 kcal Electronic energy + Delta-G solvation = -27943.620662 eV Core-core repulsion = 24052.456126 eV Total energy + Delta-G solvation = -3891.164536 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -39.56046 -37.86720 -37.46736 -36.64295 -35.26212 -34.02088 -32.74906 -30.88009 -29.92646 -29.56946 -27.61276 -26.77613 -25.75434 -24.92189 -22.27867 -21.90106 -21.10273 -19.44079 -18.65420 -17.76647 -17.46423 -16.92395 -16.55743 -16.05477 -15.78913 -15.46643 -15.17119 -14.59370 -14.14929 -14.03590 -13.91846 -13.67650 -13.38208 -13.25612 -12.92363 -12.84636 -12.56176 -12.52491 -12.19475 -12.16129 -11.95231 -11.70075 -11.56074 -11.49379 -11.28239 -11.25567 -11.08954 -10.89266 -10.80343 -10.73127 -10.65266 -10.56325 -9.93828 -9.88545 -9.80907 -9.42767 -8.73378 -8.15036 -7.97416 -7.35497 -4.93967 1.01819 2.00645 2.55155 2.89310 3.00758 3.08767 3.41006 3.56290 3.71006 4.10347 4.33034 4.39665 4.50198 4.71778 4.89914 5.00563 5.06253 5.09911 5.12690 5.21864 5.26736 5.33076 5.38429 5.40317 5.57811 5.68088 5.79350 5.82437 5.83865 5.84462 5.93804 6.02704 6.06209 6.24699 6.30249 6.31057 6.41781 6.54173 6.68282 6.88286 6.90415 7.13439 7.20850 7.27437 7.56903 7.81435 7.98951 8.31995 8.41217 9.63483 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013461 B = 0.003555 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.576875 B = 7875.277285 C = 8865.404332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.076 3.924 4 C -0.070 4.070 5 C -0.132 4.132 6 C -0.112 4.112 7 C 0.121 3.879 8 N -1.014 6.014 9 S 2.709 3.291 10 O -0.976 6.976 11 O -0.977 6.977 12 C -0.792 4.792 13 C 0.005 3.995 14 C -0.222 4.222 15 C 0.117 3.883 16 C -0.416 4.416 17 H 0.099 0.901 18 C 0.080 3.920 19 N -0.779 5.779 20 Si 0.917 3.083 21 H -0.264 1.264 22 H -0.286 1.286 23 H -0.240 1.240 24 C -0.253 4.253 25 C 0.015 3.985 26 C 0.130 3.870 27 H 0.040 0.960 28 H 0.084 0.916 29 H 0.040 0.960 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.293 0.707 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.084 0.916 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.342 -13.420 -7.674 19.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C -0.001 4.001 4 C -0.072 4.072 5 C -0.189 4.189 6 C -0.151 4.151 7 C -0.005 4.005 8 N -0.850 5.850 9 S 2.809 3.191 10 O -0.967 6.967 11 O -0.968 6.968 12 C -0.888 4.888 13 C -0.015 4.015 14 C -0.242 4.242 15 C 0.113 3.887 16 C -0.442 4.442 17 H 0.117 0.883 18 C -0.143 4.143 19 N -0.401 5.401 20 Si 0.742 3.258 21 H -0.189 1.189 22 H -0.213 1.213 23 H -0.163 1.163 24 C -0.273 4.273 25 C -0.005 4.005 26 C 0.004 3.996 27 H 0.058 0.942 28 H 0.102 0.898 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.104 0.896 42 H 0.124 0.876 43 H 0.126 0.874 44 H 0.102 0.898 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.471 -13.535 -8.112 18.938 hybrid contribution -0.582 0.211 1.185 1.337 sum -11.053 -13.324 -6.927 18.646 Atomic orbital electron populations 1.22724 0.81216 1.02599 0.99964 1.87865 1.19366 1.27784 1.95408 1.22447 0.92356 0.84706 1.00585 1.21734 0.92702 0.95863 0.96906 1.21668 1.01307 0.99848 0.96059 1.22667 0.94993 1.01005 0.96420 1.21668 0.97758 0.86421 0.94628 1.58811 1.25343 1.39759 1.61077 1.00868 0.71382 0.72798 0.74049 1.93488 1.47684 1.69002 1.86527 1.93482 1.85701 1.75301 1.42274 1.29353 1.27033 1.15403 1.16971 1.20235 0.92906 0.91749 0.96579 1.21062 1.07321 0.99998 0.95858 1.17913 0.86807 0.91223 0.92794 1.19855 1.38665 0.96035 0.89684 0.88291 1.26392 0.90840 1.00571 0.96500 1.69675 1.29226 1.37281 1.03875 0.86205 0.80544 0.80870 0.78186 1.18938 1.21257 1.16339 1.21046 1.09060 0.97348 0.99827 1.20207 0.92063 0.97018 0.91218 1.21903 0.83151 0.95651 0.98892 0.94176 0.89761 0.94105 0.92886 0.92735 0.92553 0.92261 0.91555 0.90634 0.89890 0.91294 0.91569 0.87311 0.87477 0.89589 0.87630 0.87380 0.89791 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.73 9.85 -35.23 -0.35 -4.07 16 3 C 0.08 0.70 4.90 37.16 0.18 0.88 16 4 C -0.07 -0.74 0.75 -152.36 -0.11 -0.85 16 5 C -0.13 -1.35 8.42 37.16 0.31 -1.04 16 6 C -0.11 -1.18 5.81 -24.90 -0.14 -1.33 16 7 C 0.12 1.56 6.62 -3.06 -0.02 1.54 16 8 N -1.01 -15.17 3.68 -111.42 -0.41 -15.58 16 9 S 2.71 50.73 5.93 -107.50 -0.64 50.09 16 10 O -0.98 -20.19 16.84 -57.17 -0.96 -21.15 16 11 O -0.98 -19.79 16.58 -57.17 -0.95 -20.73 16 12 C -0.79 -16.60 6.00 -39.28 -0.24 -16.84 16 13 C 0.01 0.11 9.49 -39.66 -0.38 -0.26 16 14 C -0.22 -4.98 9.80 -38.87 -0.38 -5.36 16 15 C 0.12 2.83 5.11 -106.82 -0.55 2.28 16 16 C -0.42 -10.45 9.57 -37.74 -0.36 -10.81 16 17 H 0.10 2.57 8.06 -52.49 -0.42 2.14 16 18 C 0.08 1.94 5.40 -17.34 -0.09 1.85 16 19 N -0.78 -19.03 13.93 55.55 0.77 -18.25 16 20 Si 0.92 19.23 24.52 -169.99 -4.17 15.06 16 21 H -0.26 -5.39 6.71 56.52 0.38 -5.01 16 22 H -0.29 -5.70 7.11 56.52 0.40 -5.30 16 23 H -0.24 -5.17 6.86 56.52 0.39 -4.78 16 24 C -0.25 -5.91 7.17 -38.87 -0.28 -6.19 16 25 C 0.02 0.33 9.49 -39.66 -0.38 -0.05 16 26 C 0.13 1.62 6.04 -2.53 -0.02 1.61 16 27 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.48 8.08 -51.93 -0.42 0.06 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.66 7.84 -51.93 -0.41 0.25 16 34 H 0.07 0.65 7.66 -51.93 -0.40 0.25 16 35 H 0.07 0.77 7.99 -51.93 -0.42 0.35 16 36 H 0.08 0.79 8.05 -51.93 -0.42 0.37 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.11 2.04 7.59 -52.49 -0.40 1.64 16 40 H 0.11 2.21 8.06 -52.49 -0.42 1.79 16 41 H 0.29 6.40 8.30 -40.82 -0.34 6.06 16 42 H 0.11 2.41 4.73 -52.49 -0.25 2.16 16 43 H 0.11 2.15 7.60 -52.49 -0.40 1.75 16 44 H 0.08 1.04 7.69 -51.93 -0.40 0.64 16 45 H 0.07 0.80 8.03 -51.93 -0.42 0.38 16 LS Contribution 374.26 15.07 5.64 5.64 Total: -1.00 -29.52 374.26 -9.29 -38.81 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -6.90 Total: 3.44 kcal Atomic # 6 Polarization: -31.91 SS G_CDS: -1.34 Total: -33.25 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: 0.36 Total: -33.84 kcal Atomic # 8 Polarization: -43.70 SS G_CDS: -2.26 Total: -45.96 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.17 Total: 15.06 kcal Atomic # 16 Polarization: 50.73 SS G_CDS: -0.64 Total: 50.09 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.52 -9.29 -38.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381800942.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.921 kcal (2) G-P(sol) polarization free energy of solvation -29.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds