Wall clock time and date at job start Sat Apr 11 2020 05:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42902 * 114.00034 * 2 1 4 4 C 1.53003 * 109.47196 * 180.02562 * 3 2 1 5 5 C 1.53001 * 110.88669 * 56.11971 * 4 3 2 6 6 C 1.55155 * 111.00477 * 292.19495 * 4 3 2 7 7 C 1.54317 * 102.94267 * 206.42436 * 6 4 3 8 8 N 1.47028 * 107.27307 * 22.19238 * 7 6 4 9 9 S 1.65600 * 125.64772 * 181.02571 * 8 7 6 10 10 O 1.42098 * 106.40468 * 23.58064 * 9 8 7 11 11 O 1.42098 * 106.39969 * 156.50057 * 9 8 7 12 12 C 1.76196 * 107.21706 * 270.03882 * 9 8 7 13 13 C 1.38641 * 119.75032 * 269.72647 * 12 9 8 14 14 C 1.37621 * 120.24785 * 179.76189 * 13 12 9 15 15 C 1.40715 * 119.74470 * 0.49248 * 14 13 12 16 16 C 1.41398 * 120.24546 * 179.78921 * 15 14 13 17 17 H 1.08002 * 119.99609 * 330.21495 * 16 15 14 18 18 C 1.39941 * 119.99994 * 150.21680 * 16 15 14 19 19 N 1.30823 * 119.99970 * 161.72068 * 18 16 15 20 20 Si 1.86801 * 120.00156 * 341.71618 * 18 16 15 21 21 H 1.48500 * 109.47100 * 95.41401 * 20 18 16 22 22 H 1.48498 * 109.46908 * 215.41467 * 20 18 16 23 23 H 1.48501 * 109.47048 * 335.41372 * 20 18 16 24 24 C 1.40720 * 119.51181 * 359.75914 * 15 14 13 25 25 C 1.37613 * 119.74622 * 0.02562 * 24 15 14 26 26 C 1.47426 * 108.70119 * 1.05903 * 8 7 6 27 27 H 1.08999 * 109.47435 * 59.99716 * 1 2 3 28 28 H 1.09001 * 109.47286 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47035 * 300.00230 * 1 2 3 30 30 H 1.09005 * 109.47027 * 299.99854 * 3 2 1 31 31 H 1.08993 * 109.47377 * 59.99498 * 3 2 1 32 32 H 1.09003 * 109.47292 * 60.70127 * 5 4 3 33 33 H 1.08994 * 109.47211 * 180.69949 * 5 4 3 34 34 H 1.09004 * 109.46702 * 300.69881 * 5 4 3 35 35 H 1.09003 * 110.72070 * 324.78455 * 6 4 3 36 36 H 1.08999 * 110.71904 * 88.06079 * 6 4 3 37 37 H 1.09006 * 109.88573 * 262.77588 * 7 6 4 38 38 H 1.09003 * 109.88350 * 141.60783 * 7 6 4 39 39 H 1.07999 * 119.87648 * 0.02562 * 13 12 9 40 40 H 1.08002 * 120.12899 * 180.28027 * 14 13 12 41 41 H 0.96997 * 120.00162 * 179.97438 * 19 18 16 42 42 H 1.07992 * 120.12671 * 179.97438 * 24 15 14 43 43 H 1.07995 * 119.88123 * 179.97438 * 25 24 15 44 44 H 1.09004 * 110.36382 * 217.03685 * 26 8 7 45 45 H 1.08995 * 110.45778 * 94.75807 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.0158 0.3474 -1.1877 6 6 4.0472 0.5951 1.3402 7 6 5.4778 1.1640 1.4443 8 7 5.5323 2.3659 0.5991 9 16 6.8655 3.3188 0.3611 10 8 7.9962 2.5016 0.6311 11 8 6.6663 3.9852 -0.8780 12 6 6.8442 4.5658 1.6057 13 6 6.2004 5.7693 1.3628 14 6 6.1733 6.7485 2.3294 15 6 6.8111 6.5284 3.5642 16 6 6.7937 7.5288 4.5633 17 1 6.7485 8.5709 4.2831 18 6 6.8349 7.1687 5.9149 19 7 7.1755 8.0526 6.8172 20 14 6.4034 5.4260 6.4308 21 1 7.6470 4.6239 6.5539 22 1 5.7024 5.4565 7.7396 23 1 5.5176 4.8123 5.4091 24 6 7.4661 5.3049 3.7978 25 6 7.4767 4.3383 2.8183 26 6 4.2031 2.5825 -0.0008 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6885 1.8464 -0.8900 31 1 1.6885 1.8464 0.8899 32 1 3.7121 0.8279 -2.1178 33 1 5.1023 0.2660 -1.1589 34 1 3.5752 -0.6480 -1.1322 35 1 3.4335 0.9400 2.1724 36 1 4.0673 -0.4940 1.2998 37 1 6.1970 0.4268 1.0871 38 1 5.6974 1.4282 2.4788 39 1 5.7147 5.9375 0.4129 40 1 5.6673 7.6836 2.1398 41 1 7.2037 7.8032 7.7542 42 1 7.9592 5.1256 4.7416 43 1 7.9790 3.3988 2.9951 44 1 4.3032 2.9551 -1.0203 45 1 3.6222 3.2804 0.6022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381800942.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:58 Heat of formation + Delta-G solvation = -127.948145 kcal Electronic energy + Delta-G solvation = -27944.454039 eV Core-core repulsion = 24052.456126 eV Total energy + Delta-G solvation = -3891.997914 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.43151 -39.63877 -38.23570 -38.20282 -36.85704 -35.80960 -33.70740 -32.66601 -31.68080 -30.52976 -28.25866 -27.59470 -27.52281 -25.68309 -23.66060 -23.35064 -22.81710 -20.29941 -20.05756 -19.55980 -18.93677 -18.36016 -17.32273 -17.25398 -16.83455 -16.56976 -16.50158 -15.88217 -15.62723 -15.48621 -15.00884 -14.86125 -14.70384 -14.52225 -14.46613 -14.25674 -13.95809 -13.66209 -13.39169 -13.25061 -13.13288 -13.06892 -12.98568 -12.82324 -12.68241 -12.56598 -12.42995 -12.30610 -12.21841 -11.76191 -11.69326 -11.56146 -11.50747 -11.42471 -11.14444 -10.50745 -10.01089 -9.85547 -9.72688 -9.14413 -6.81249 -0.48012 0.25805 0.77379 1.20532 1.32511 1.42357 2.00874 2.07344 2.39356 2.78482 2.87553 3.27446 3.33155 3.52812 3.73058 3.96542 4.12069 4.16665 4.25767 4.33950 4.36272 4.49715 4.53901 4.55112 4.61625 4.67156 4.71762 4.74185 4.78557 4.82201 4.93550 4.95088 4.96239 5.09649 5.10595 5.14641 5.23560 5.26597 5.34752 5.39123 5.46665 5.48265 5.57785 5.72313 6.00435 6.17643 6.29875 6.49146 6.58805 7.90760 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013461 B = 0.003555 C = 0.003158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.576875 B = 7875.277285 C = 8865.404332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.402 6.402 3 C 0.078 3.922 4 C -0.065 4.065 5 C -0.130 4.130 6 C -0.105 4.105 7 C 0.110 3.890 8 N -1.011 6.011 9 S 2.736 3.264 10 O -0.994 6.994 11 O -0.990 6.990 12 C -0.793 4.793 13 C 0.006 3.994 14 C -0.237 4.237 15 C 0.105 3.895 16 C -0.454 4.454 17 H 0.072 0.928 18 C 0.052 3.948 19 N -0.815 5.815 20 Si 0.962 3.038 21 H -0.254 1.254 22 H -0.268 1.268 23 H -0.249 1.249 24 C -0.269 4.269 25 C 0.009 3.991 26 C 0.120 3.880 27 H 0.048 0.952 28 H 0.095 0.905 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.134 0.866 40 H 0.117 0.883 41 H 0.304 0.696 42 H 0.108 0.892 43 H 0.128 0.872 44 H 0.085 0.915 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.852 -15.997 -8.626 22.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.321 6.321 3 C 0.001 3.999 4 C -0.067 4.067 5 C -0.187 4.187 6 C -0.143 4.143 7 C -0.014 4.014 8 N -0.850 5.850 9 S 2.833 3.167 10 O -0.985 6.985 11 O -0.981 6.981 12 C -0.885 4.885 13 C -0.013 4.013 14 C -0.257 4.257 15 C 0.102 3.898 16 C -0.481 4.481 17 H 0.090 0.910 18 C -0.168 4.168 19 N -0.438 5.438 20 Si 0.784 3.216 21 H -0.180 1.180 22 H -0.194 1.194 23 H -0.173 1.173 24 C -0.289 4.289 25 C -0.011 4.011 26 C -0.005 4.005 27 H 0.066 0.934 28 H 0.113 0.887 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.114 0.886 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.152 0.848 40 H 0.135 0.865 41 H 0.115 0.885 42 H 0.126 0.874 43 H 0.146 0.854 44 H 0.104 0.896 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.973 -16.069 -9.039 21.984 hybrid contribution -0.164 0.882 1.242 1.532 sum -12.138 -15.187 -7.797 20.947 Atomic orbital electron populations 1.22882 0.79852 1.03601 1.00632 1.87828 1.20862 1.27890 1.95559 1.22406 0.91207 0.84897 1.01399 1.21689 0.93691 0.94418 0.96919 1.21659 1.00591 1.00209 0.96287 1.22659 0.93332 1.01672 0.96684 1.21929 0.99638 0.85639 0.94230 1.58457 1.25517 1.39486 1.61539 1.00028 0.71529 0.72148 0.72962 1.93464 1.49422 1.69027 1.86564 1.93462 1.86138 1.75936 1.42557 1.29948 1.25090 1.16450 1.17041 1.20548 0.92385 0.91230 0.97186 1.21296 1.07524 1.00985 0.95871 1.18086 0.87024 0.91491 0.93233 1.19801 1.42205 0.95116 0.90986 0.90978 1.26981 0.90338 1.03500 0.96026 1.69679 1.30693 1.38806 1.04629 0.85521 0.80555 0.77228 0.78263 1.17957 1.19382 1.17257 1.21193 1.09472 0.97528 1.00661 1.20504 0.91920 0.97497 0.91142 1.22174 0.81996 0.97359 0.99007 0.93361 0.88695 0.93572 0.91885 0.92185 0.92023 0.93330 0.91026 0.89975 0.88593 0.90870 0.91543 0.84811 0.86541 0.88537 0.87416 0.85372 0.89628 0.90396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.40 -6.58 9.85 -148.98 -1.47 -8.05 16 3 C 0.08 1.19 4.90 71.98 0.35 1.55 16 4 C -0.07 -1.19 0.75 -50.79 -0.04 -1.22 16 5 C -0.13 -2.34 8.42 71.98 0.61 -1.74 16 6 C -0.10 -1.89 5.81 31.78 0.18 -1.71 16 7 C 0.11 2.56 6.62 86.73 0.57 3.14 16 8 N -1.01 -27.77 3.68 -506.41 -1.87 -29.64 16 9 S 2.74 96.69 5.93 -56.49 -0.34 96.35 16 10 O -0.99 -39.13 16.84 -128.00 -2.16 -41.29 16 11 O -0.99 -37.94 16.58 -128.00 -2.12 -40.06 16 12 C -0.79 -31.88 6.00 22.46 0.13 -31.74 16 13 C 0.01 0.25 9.49 22.22 0.21 0.46 16 14 C -0.24 -10.61 9.80 22.73 0.22 -10.39 16 15 C 0.11 5.17 5.11 -21.29 -0.11 5.06 16 16 C -0.45 -23.75 9.57 23.46 0.22 -23.52 16 17 H 0.07 4.00 8.06 -2.91 -0.02 3.98 16 18 C 0.05 2.54 5.40 85.26 0.46 3.00 16 19 N -0.82 -40.91 13.93 21.83 0.30 -40.61 16 20 Si 0.96 39.26 24.52 68.60 1.68 40.94 16 21 H -0.25 -9.90 6.71 99.48 0.67 -9.23 16 22 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 23 H -0.25 -10.40 6.86 99.48 0.68 -9.71 16 24 C -0.27 -12.48 7.17 22.73 0.16 -12.32 16 25 C 0.01 0.38 9.49 22.22 0.21 0.59 16 26 C 0.12 2.66 6.04 86.86 0.52 3.18 16 27 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.06 0.86 8.08 -2.39 -0.02 0.84 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.05 0.97 7.84 -2.39 -0.02 0.95 16 34 H 0.07 1.22 7.66 -2.39 -0.02 1.20 16 35 H 0.08 1.40 7.99 -2.39 -0.02 1.38 16 36 H 0.10 1.52 8.05 -2.39 -0.02 1.50 16 37 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.13 4.71 7.59 -2.91 -0.02 4.69 16 40 H 0.12 4.87 8.06 -2.91 -0.02 4.84 16 41 H 0.30 13.47 8.30 -92.71 -0.77 12.70 16 42 H 0.11 4.87 4.73 -2.91 -0.01 4.86 16 43 H 0.13 4.84 7.60 -2.91 -0.02 4.81 16 44 H 0.09 1.89 7.69 -2.39 -0.02 1.87 16 45 H 0.08 1.59 8.03 -2.39 -0.02 1.58 16 Total: -1.00 -62.86 374.26 -0.07 -62.93 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 0.91 Total: 23.54 kcal Atomic # 6 Polarization: -69.08 SS G_CDS: 4.97 Total: -64.11 kcal Atomic # 7 Polarization: -68.68 SS G_CDS: -1.56 Total: -70.24 kcal Atomic # 8 Polarization: -83.66 SS G_CDS: -5.75 Total: -89.40 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 1.68 Total: 40.94 kcal Atomic # 16 Polarization: 96.69 SS G_CDS: -0.34 Total: 96.35 kcal Total: -62.86 -0.07 -62.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381800942.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.018 kcal (2) G-P(sol) polarization free energy of solvation -62.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds