Wall clock time and date at job start Sat Apr 11 2020 05:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.47321 * 2 1 4 4 C 1.53007 * 109.46848 * 119.99650 * 2 1 3 5 5 N 1.46498 * 109.46662 * 185.00125 * 4 2 1 6 6 C 1.34783 * 119.99450 * 180.02562 * 5 4 2 7 7 O 1.21606 * 120.00135 * 0.02562 * 6 5 4 8 8 C 1.47433 * 119.99777 * 179.97438 * 6 5 4 9 9 C 1.39678 * 120.21285 * 359.97438 * 8 6 5 10 10 C 1.37809 * 119.93418 * 180.02562 * 9 8 6 11 11 C 1.38660 * 120.38295 * 0.02562 * 10 9 8 12 12 C 1.37910 * 120.43889 * 0.02562 * 11 10 9 13 13 C 1.39110 * 120.04977 * 359.97438 * 12 11 10 14 14 S 1.76195 * 120.19106 * 180.02562 * 13 12 11 15 15 C 1.76205 * 99.99901 * 6.85682 * 14 13 12 16 16 H 1.08005 * 119.99976 * 5.65159 * 15 14 13 17 17 C 1.38804 * 120.00248 * 185.65626 * 15 14 13 18 18 N 1.31558 * 119.99610 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00279 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47334 * 89.99556 * 19 17 15 21 21 H 1.48501 * 109.47313 * 210.00161 * 19 17 15 22 22 H 1.48500 * 109.46994 * 329.99936 * 19 17 15 23 23 O 1.42895 * 109.47331 * 239.99912 * 2 1 3 24 24 C 1.42897 * 114.00049 * 60.00047 * 23 2 1 25 25 C 1.53007 * 109.47134 * 180.02562 * 24 23 2 26 26 O 1.42898 * 109.47028 * 64.99809 * 25 24 23 27 27 H 1.08997 * 109.47055 * 300.00495 * 1 2 3 28 28 H 1.08998 * 109.46838 * 59.99735 * 1 2 3 29 29 H 1.09000 * 109.46935 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47384 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.46643 * 299.99923 * 3 2 1 32 32 H 1.09004 * 109.46804 * 59.99636 * 3 2 1 33 33 H 1.09000 * 109.47129 * 65.00476 * 4 2 1 34 34 H 1.09003 * 109.47146 * 305.00089 * 4 2 1 35 35 H 0.97003 * 120.00826 * 359.97438 * 5 4 2 36 36 H 1.07994 * 120.03669 * 0.27820 * 9 8 6 37 37 H 1.08006 * 119.80802 * 179.97438 * 10 9 8 38 38 H 1.08007 * 119.77539 * 180.02562 * 11 10 9 39 39 H 1.07997 * 119.97290 * 179.97438 * 12 11 10 40 40 H 0.96997 * 119.99773 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.47006 * 300.00280 * 24 23 2 42 42 H 1.09000 * 109.47005 * 60.00377 * 24 23 2 43 43 H 1.08997 * 109.47034 * 185.00073 * 25 24 23 44 44 H 1.08999 * 109.46891 * 305.00087 * 25 24 23 45 45 H 0.96698 * 113.99750 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 3.5000 -0.6178 1.3110 6 6 4.1730 -1.1834 2.3327 7 8 3.5683 -1.7799 3.2030 8 6 5.6423 -1.0798 2.3946 9 6 6.3415 -0.3971 1.3965 10 6 7.7150 -0.3043 1.4597 11 6 8.4096 -0.8857 2.5095 12 6 7.7352 -1.5644 3.5027 13 6 6.3488 -1.6692 3.4569 14 16 5.4833 -2.5348 4.7242 15 6 6.8102 -2.8516 5.8394 16 1 7.7878 -2.4342 5.6481 17 6 6.5993 -3.6378 6.9637 18 7 5.4084 -4.1460 7.1970 19 14 8.0058 -3.9731 8.1463 20 1 8.0340 -2.9203 9.1933 21 1 7.8109 -5.3001 8.7838 22 1 9.2908 -3.9655 7.4020 23 8 2.0063 -0.6736 -1.1667 24 6 1.5847 -0.0774 -2.3950 25 6 2.1496 -0.8773 -3.5706 26 8 1.5808 -2.1882 -3.5718 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.7516 -1.7715 1.2057 34 1 1.6053 -0.2616 2.1371 35 1 3.9824 -0.1429 0.6163 36 1 5.8059 0.0611 0.5783 37 1 8.2536 0.2238 0.6867 38 1 9.4860 -0.8066 2.5495 39 1 8.2838 -2.0148 4.3167 40 1 5.2610 -4.6956 7.9825 41 1 0.4959 -0.0789 -2.4447 42 1 1.9493 0.9487 -2.4447 43 1 1.9029 -0.3732 -4.5050 44 1 3.2327 -0.9513 -3.4726 45 1 1.8942 -2.7522 -4.2921 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385513968.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:02 Heat of formation + Delta-G solvation = -131.093634 kcal Electronic energy + Delta-G solvation = -27008.098526 eV Core-core repulsion = 23115.964214 eV Total energy + Delta-G solvation = -3892.134312 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.17163 -40.07551 -38.88256 -37.62582 -35.82650 -34.75815 -33.54611 -31.90886 -31.77179 -30.32797 -28.39679 -27.84086 -27.53850 -24.46690 -23.49110 -23.21494 -21.58030 -21.08411 -19.94623 -18.87180 -18.49158 -17.73742 -17.42093 -17.05946 -17.02173 -16.26386 -16.13836 -16.00033 -15.60909 -15.46232 -15.30713 -15.10030 -14.68287 -14.42220 -14.32478 -13.95892 -13.84135 -13.64342 -13.33189 -13.28527 -12.98141 -12.89184 -12.87370 -12.83287 -12.54639 -12.25472 -12.11242 -12.02355 -11.57200 -11.47887 -11.39241 -11.24674 -10.90663 -10.47482 -10.41116 -10.12806 -9.90269 -9.75230 -8.46028 -8.44286 -6.23633 0.04536 0.54383 1.26847 1.36828 1.45502 1.65256 2.03114 2.17349 2.29337 2.63381 2.88378 3.05211 3.25936 3.44446 3.65265 3.87014 3.94934 3.97274 4.04456 4.25981 4.27441 4.31454 4.48798 4.53678 4.59000 4.60916 4.62443 4.65309 4.73908 4.83809 4.85755 4.87141 4.92432 5.03762 5.11339 5.17468 5.32449 5.37055 5.45777 5.50569 5.58182 5.67694 6.10641 6.17053 6.31814 6.63850 6.94429 6.96497 7.37154 8.61360 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016379 B = 0.002729 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.117516 B =10257.802046 C =11040.304173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.107 3.893 3 C -0.177 4.177 4 C 0.136 3.864 5 N -0.706 5.706 6 C 0.543 3.457 7 O -0.559 6.559 8 C -0.182 4.182 9 C -0.054 4.054 10 C -0.156 4.156 11 C -0.069 4.069 12 C -0.175 4.175 13 C -0.072 4.072 14 S 0.062 5.938 15 C -0.602 4.602 16 H 0.095 0.905 17 C 0.023 3.977 18 N -0.906 5.906 19 Si 0.995 3.005 20 H -0.266 1.266 21 H -0.273 1.273 22 H -0.257 1.257 23 O -0.389 6.389 24 C 0.046 3.954 25 C 0.073 3.927 26 O -0.596 6.596 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.047 0.953 34 H 0.078 0.922 35 H 0.411 0.589 36 H 0.156 0.844 37 H 0.167 0.833 38 H 0.151 0.849 39 H 0.119 0.881 40 H 0.275 0.725 41 H 0.058 0.942 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.054 0.946 45 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.537 14.351 -24.044 28.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.068 3.932 3 C -0.234 4.234 4 C 0.012 3.988 5 N -0.361 5.361 6 C 0.332 3.668 7 O -0.439 6.439 8 C -0.195 4.195 9 C -0.074 4.074 10 C -0.179 4.179 11 C -0.090 4.090 12 C -0.200 4.200 13 C -0.190 4.190 14 S 0.321 5.679 15 C -0.748 4.748 16 H 0.113 0.887 17 C -0.182 4.182 18 N -0.541 5.541 19 Si 0.815 3.185 20 H -0.191 1.191 21 H -0.198 1.198 22 H -0.181 1.181 23 O -0.309 6.309 24 C -0.030 4.030 25 C -0.005 4.005 26 O -0.404 6.404 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.250 0.750 36 H 0.173 0.827 37 H 0.185 0.815 38 H 0.169 0.831 39 H 0.137 0.863 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.109 0.891 43 H 0.106 0.894 44 H 0.072 0.928 45 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -5.599 13.411 -22.416 26.715 hybrid contribution 1.984 -0.312 0.315 2.033 sum -3.616 13.100 -22.101 25.945 Atomic orbital electron populations 1.22336 0.93636 1.02953 1.04193 1.21657 0.94525 0.92560 0.84468 1.22433 1.02350 0.94364 1.04283 1.21333 0.80048 1.00400 0.97028 1.45565 1.07375 1.57130 1.25983 1.18552 0.87790 0.78693 0.81728 1.90779 1.70021 1.43419 1.39689 1.19490 0.92133 1.08505 0.99369 1.21401 0.95254 0.94990 0.95746 1.21321 0.93568 1.03084 0.99934 1.21546 1.00983 0.93882 0.92565 1.21456 0.92678 1.04038 1.01828 1.22984 0.97944 0.99286 0.98792 1.84976 1.11569 1.59377 1.12028 1.24251 1.00615 1.37939 1.12011 0.88749 1.26172 0.99483 0.93482 0.99102 1.70141 1.23709 1.32057 1.28186 0.85019 0.77768 0.78068 0.77600 1.19062 1.19812 1.18076 1.88071 1.74468 1.54837 1.13565 1.22872 0.99758 0.97047 0.83278 1.22382 0.97426 0.83556 0.97119 1.86532 1.71132 1.26117 1.56661 0.90141 0.89868 0.92783 0.91475 0.89593 0.90599 0.93465 0.90398 0.75009 0.82663 0.81544 0.83135 0.86291 0.91537 0.92378 0.89137 0.89429 0.92783 0.75628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.81 8.25 71.98 0.59 -2.22 16 2 C 0.11 2.05 0.80 -10.79 -0.01 2.04 16 3 C -0.18 -2.36 8.02 71.99 0.58 -1.78 16 4 C 0.14 3.76 4.84 86.38 0.42 4.18 16 5 N -0.71 -21.07 5.14 -466.34 -2.40 -23.47 16 6 C 0.54 22.52 7.75 86.66 0.67 23.19 16 7 O -0.56 -29.02 13.77 -4.05 -0.06 -29.08 16 8 C -0.18 -7.33 5.89 -19.95 -0.12 -7.45 16 9 C -0.05 -1.53 9.53 22.52 0.21 -1.32 16 10 C -0.16 -3.93 10.02 22.27 0.22 -3.71 16 11 C -0.07 -2.11 10.03 22.29 0.22 -1.89 16 12 C -0.17 -7.43 9.22 22.40 0.21 -7.23 16 13 C -0.07 -3.48 6.14 23.04 0.14 -3.34 16 14 S 0.06 3.67 18.56 -56.49 -1.05 2.63 16 15 C -0.60 -35.87 9.00 67.96 0.61 -35.26 16 16 H 0.09 5.29 4.98 -2.91 -0.01 5.28 16 17 C 0.02 1.35 5.49 84.87 0.47 1.81 16 18 N -0.91 -56.62 13.22 21.65 0.29 -56.34 16 19 Si 0.99 44.67 29.55 68.60 2.03 46.70 16 20 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 23 O -0.39 -8.30 9.90 -144.34 -1.43 -9.73 16 24 C 0.05 0.65 5.52 71.98 0.40 1.04 16 25 C 0.07 0.91 7.43 71.98 0.53 1.44 16 26 O -0.60 -10.61 13.62 -144.34 -1.97 -12.58 16 27 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.08 1.01 6.54 -2.39 -0.02 0.99 16 29 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 0.88 6.57 -2.39 -0.02 0.87 16 31 H 0.09 0.74 6.54 -2.39 -0.02 0.73 16 32 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.41 9.43 5.02 -92.71 -0.47 8.96 16 36 H 0.16 2.97 6.40 -2.91 -0.02 2.95 16 37 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 38 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 39 H 0.12 5.46 5.04 -2.91 -0.01 5.44 16 40 H 0.28 15.87 8.31 -92.71 -0.77 15.10 16 41 H 0.06 0.80 6.42 -2.39 -0.02 0.79 16 42 H 0.09 0.75 6.42 -2.39 -0.02 0.74 16 43 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.39 3.40 9.12 -74.06 -0.68 2.72 16 Total: -1.00 -86.21 377.50 0.47 -85.74 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: -0.10 Total: 26.59 kcal Atomic # 6 Polarization: -35.62 SS G_CDS: 5.15 Total: -30.47 kcal Atomic # 7 Polarization: -77.69 SS G_CDS: -2.11 Total: -79.80 kcal Atomic # 8 Polarization: -47.94 SS G_CDS: -3.45 Total: -51.39 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 16 Polarization: 3.67 SS G_CDS: -1.05 Total: 2.63 kcal Total: -86.21 0.47 -85.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385513968.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.354 kcal (2) G-P(sol) polarization free energy of solvation -86.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds