Wall clock time and date at job start Sat Apr 11 2020 05:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 113.99727 * 2 1 4 4 C 1.52999 * 109.46545 * 299.97298 * 3 2 1 5 5 C 1.53045 * 109.45826 * 180.02562 * 3 2 1 6 6 C 1.53195 * 109.31380 * 178.61476 * 5 3 2 7 7 N 1.46927 * 108.77110 * 54.63464 * 6 5 3 8 8 S 1.65606 * 120.62798 * 126.36968 * 7 6 5 9 9 O 1.42095 * 106.40363 * 336.45975 * 8 7 6 10 10 O 1.42100 * 106.40121 * 203.53636 * 8 7 6 11 11 C 1.76203 * 107.21784 * 89.99963 * 8 7 6 12 12 C 1.38631 * 119.74995 * 89.99661 * 11 8 7 13 13 C 1.37618 * 120.24580 * 179.97438 * 12 11 8 14 14 C 1.40715 * 119.74953 * 0.02562 * 13 12 11 15 15 C 1.41397 * 120.24850 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99675 * 335.21465 * 15 14 13 17 17 C 1.39941 * 120.00117 * 154.93259 * 15 14 13 18 18 N 1.30831 * 120.00117 * 342.49004 * 17 15 14 19 19 Si 1.86797 * 120.00094 * 162.49029 * 17 15 14 20 20 H 1.48500 * 109.47305 * 94.51868 * 19 17 15 21 21 H 1.48502 * 109.47201 * 214.52371 * 19 17 15 22 22 H 1.48507 * 109.46854 * 334.52024 * 19 17 15 23 23 C 1.40717 * 119.50812 * 0.26734 * 14 13 12 24 24 C 1.37619 * 119.74399 * 359.42832 * 23 14 13 25 25 C 1.46921 * 118.74226 * 306.64288 * 7 6 5 26 26 C 1.52762 * 109.00987 * 53.31177 * 25 7 6 27 27 H 1.09000 * 109.46668 * 299.99707 * 1 2 3 28 28 H 1.08997 * 109.47402 * 59.99826 * 1 2 3 29 29 H 1.09002 * 109.46670 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46954 * 300.03457 * 4 3 2 31 31 H 1.09006 * 109.46620 * 60.02621 * 4 3 2 32 32 H 1.09000 * 109.47360 * 180.02562 * 4 3 2 33 33 H 1.08999 * 109.49695 * 58.66336 * 5 3 2 34 34 H 1.09000 * 109.52665 * 298.58138 * 5 3 2 35 35 H 1.08993 * 109.58698 * 294.85142 * 6 5 3 36 36 H 1.09000 * 109.58672 * 174.41733 * 6 5 3 37 37 H 1.07994 * 119.87767 * 359.97438 * 12 11 8 38 38 H 1.08011 * 120.12658 * 179.97438 * 13 12 11 39 39 H 0.96999 * 119.99768 * 179.97438 * 18 17 15 40 40 H 1.07997 * 120.12568 * 179.70175 * 23 14 13 41 41 H 1.07996 * 119.87774 * 180.31043 * 24 23 14 42 42 H 1.09003 * 109.59191 * 173.14798 * 25 7 6 43 43 H 1.09002 * 109.58670 * 293.57343 * 25 7 6 44 44 H 1.08995 * 109.56421 * 185.55896 * 26 25 7 45 45 H 1.08998 * 109.38728 * 65.51185 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5591 2.0643 -1.2496 5 6 3.5358 1.1843 -0.0006 6 6 4.1553 2.5850 -0.0356 7 7 3.6127 3.3700 1.0816 8 16 4.6254 4.1209 2.1554 9 8 5.8586 3.4168 2.1037 10 8 3.8809 4.2976 3.3528 11 6 4.9475 5.7352 1.5271 12 6 4.1209 6.7896 1.8833 13 6 4.3634 8.0547 1.3989 14 6 5.4548 8.2758 0.5387 15 6 5.7140 9.5714 0.0353 16 1 4.9124 10.2911 -0.0418 17 6 7.0103 9.9231 -0.3574 18 7 8.0315 9.2106 0.0441 19 14 7.2827 11.4099 -1.4550 20 1 7.5856 12.5965 -0.6149 21 1 8.4222 11.1475 -2.3703 22 1 6.0566 11.6679 -2.2523 23 6 6.2834 7.1968 0.1790 24 6 6.0258 5.9414 0.6804 25 6 2.1547 3.4710 1.2317 26 6 1.5576 2.0650 1.2492 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8807 1.5229 -2.1393 31 1 0.4725 2.1507 -1.2498 32 1 2.0027 3.0600 -1.2500 33 1 3.8558 0.6230 -0.8785 34 1 3.8605 0.6654 0.9012 35 1 3.9062 3.0713 -0.9787 36 1 5.2380 2.5083 0.0637 37 1 3.2836 6.6176 2.5433 38 1 3.7179 8.8748 1.6774 39 1 8.9299 9.4543 -0.2285 40 1 7.1210 7.3542 -0.4844 41 1 6.6633 5.1127 0.4098 42 1 1.9177 3.9788 2.1667 43 1 1.7391 4.0310 0.3939 44 1 0.4697 2.1306 1.2608 45 1 1.8999 1.5376 2.1395 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386878175.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:07 Heat of formation + Delta-G solvation = -107.706649 kcal Electronic energy + Delta-G solvation = -28181.344139 eV Core-core repulsion = 24290.223962 eV Total energy + Delta-G solvation = -3891.120177 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -39.97023 -37.58575 -36.74860 -36.59224 -35.14579 -34.04809 -32.13367 -31.24048 -30.26923 -29.48887 -27.82454 -26.96614 -25.81937 -23.54526 -23.15702 -21.49742 -21.14402 -19.49190 -18.22031 -17.67757 -17.52943 -16.56108 -16.22279 -15.73069 -15.56883 -15.44766 -15.35842 -14.52505 -14.36443 -14.12559 -13.74999 -13.41832 -13.28395 -13.20073 -12.86216 -12.43994 -12.40416 -12.19543 -12.08906 -12.02311 -11.75925 -11.59740 -11.47529 -11.44916 -11.37111 -11.33270 -11.23298 -11.10022 -10.89294 -10.68154 -10.45613 -10.32480 -9.76948 -9.63926 -9.59546 -9.49851 -8.73947 -7.96279 -7.72418 -7.15301 -4.81386 1.16012 2.24287 2.85805 2.87828 2.90573 2.94370 3.50690 3.63399 3.65907 4.23551 4.48770 4.53921 4.65106 4.83864 4.90225 5.08710 5.13926 5.17536 5.20632 5.32973 5.36515 5.37728 5.45800 5.53409 5.55273 5.66547 5.74599 5.80841 5.90195 5.96187 6.04051 6.08769 6.09709 6.24261 6.33349 6.64159 6.67489 6.78823 6.97384 7.03541 7.09788 7.32342 7.40601 7.61247 7.75005 7.95364 8.30222 8.49659 8.63282 9.76543 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019891 B = 0.002966 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.347654 B = 9439.151268 C = 9842.498507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.381 6.381 3 C 0.117 3.883 4 C -0.183 4.183 5 C -0.116 4.116 6 C 0.122 3.878 7 N -1.004 6.004 8 S 2.691 3.309 9 O -0.980 6.980 10 O -0.983 6.983 11 C -0.787 4.787 12 C 0.001 3.999 13 C -0.239 4.239 14 C 0.140 3.860 15 C -0.436 4.436 16 H 0.087 0.913 17 C 0.072 3.928 18 N -0.765 5.765 19 Si 0.916 3.084 20 H -0.266 1.266 21 H -0.271 1.271 22 H -0.257 1.257 23 C -0.182 4.182 24 C -0.015 4.015 25 C 0.123 3.877 26 C -0.156 4.156 27 H 0.044 0.956 28 H 0.043 0.957 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.289 0.711 40 H 0.121 0.879 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.358 -10.522 -4.263 15.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.300 6.300 3 C 0.078 3.922 4 C -0.240 4.240 5 C -0.155 4.155 6 C -0.003 4.003 7 N -0.840 5.840 8 S 2.792 3.208 9 O -0.971 6.971 10 O -0.973 6.973 11 C -0.883 4.883 12 C -0.019 4.019 13 C -0.259 4.259 14 C 0.136 3.864 15 C -0.463 4.463 16 H 0.105 0.895 17 C -0.150 4.150 18 N -0.387 5.387 19 Si 0.739 3.261 20 H -0.191 1.191 21 H -0.196 1.196 22 H -0.180 1.180 23 C -0.203 4.203 24 C -0.035 4.035 25 C -0.002 4.002 26 C -0.196 4.196 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.101 0.899 40 H 0.139 0.861 41 H 0.121 0.879 42 H 0.113 0.887 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.663 -11.127 -3.477 15.142 hybrid contribution -0.076 1.483 -0.904 1.739 sum -9.739 -9.645 -4.381 14.389 Atomic orbital electron populations 1.22759 0.81820 1.02345 1.00212 1.87955 1.19321 1.27740 1.95030 1.21427 0.93947 0.82795 0.94057 1.22535 1.01671 1.01918 0.97925 1.21827 0.92239 0.97689 1.03723 1.21409 0.99312 0.89839 0.89748 1.57987 1.15998 1.65548 1.44460 1.01342 0.72211 0.74308 0.72936 1.93473 1.43233 1.73608 1.86739 1.93463 1.72713 1.87495 1.43654 1.29205 1.12631 1.18774 1.27664 1.20143 0.94920 0.92606 0.94218 1.21027 1.03724 0.95860 1.05301 1.17849 0.89399 0.92979 0.86140 1.19928 0.94627 0.97904 1.33876 0.89468 1.26141 0.95617 0.98762 0.94512 1.69828 1.00509 1.36109 1.32279 0.86150 0.79460 0.80397 0.80045 1.19100 1.19579 1.18016 1.21320 1.03060 0.91378 1.04523 1.20242 0.92996 0.97231 0.93080 1.21247 0.79609 0.96258 1.03114 1.22422 1.00887 0.97167 0.99075 0.93775 0.93839 0.90026 0.91773 0.92303 0.90307 0.90086 0.90635 0.91041 0.88286 0.87918 0.88212 0.89934 0.86100 0.87927 0.88667 0.91227 0.90594 0.90579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.21 101.05 1.03 1.24 16 2 O -0.38 -4.39 10.35 -35.23 -0.36 -4.76 16 3 C 0.12 1.29 0.88 -90.57 -0.08 1.21 16 4 C -0.18 -1.76 7.49 37.16 0.28 -1.48 16 5 C -0.12 -1.36 5.27 -26.61 -0.14 -1.50 16 6 C 0.12 1.59 6.01 -3.71 -0.02 1.57 16 7 N -1.00 -15.08 3.30 -113.77 -0.37 -15.46 16 8 S 2.69 51.92 5.73 -107.50 -0.62 51.30 16 9 O -0.98 -20.88 15.85 -57.17 -0.91 -21.78 16 10 O -0.98 -20.62 15.84 -57.17 -0.91 -21.53 16 11 C -0.79 -17.16 6.00 -39.29 -0.24 -17.39 16 12 C 0.00 0.03 9.49 -39.66 -0.38 -0.35 16 13 C -0.24 -5.58 9.80 -38.87 -0.38 -5.96 16 14 C 0.14 3.51 5.57 -106.82 -0.59 2.92 16 15 C -0.44 -10.59 9.05 -37.74 -0.34 -10.94 16 16 H 0.09 1.99 7.91 -52.49 -0.41 1.58 16 17 C 0.07 1.65 5.14 -17.34 -0.09 1.56 16 18 N -0.77 -18.28 11.00 55.55 0.61 -17.67 16 19 Si 0.92 16.85 29.59 -169.99 -5.03 11.81 16 20 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 21 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 22 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 23 C -0.18 -4.51 8.69 -38.87 -0.34 -4.85 16 24 C -0.02 -0.35 9.49 -39.66 -0.38 -0.72 16 25 C 0.12 1.58 5.98 -3.93 -0.02 1.55 16 26 C -0.16 -1.76 4.70 -26.83 -0.13 -1.88 16 27 H 0.04 0.34 6.38 -51.93 -0.33 0.01 16 28 H 0.04 0.32 6.42 -51.93 -0.33 -0.01 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.50 6.54 -51.93 -0.34 0.16 16 32 H 0.08 0.78 4.99 -51.93 -0.26 0.52 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.82 6.69 -51.93 -0.35 0.47 16 36 H 0.10 1.35 6.92 -51.93 -0.36 0.99 16 37 H 0.10 2.03 7.60 -52.49 -0.40 1.63 16 38 H 0.10 2.14 8.06 -52.48 -0.42 1.72 16 39 H 0.29 6.19 8.30 -40.82 -0.34 5.85 16 40 H 0.12 3.02 6.21 -52.49 -0.33 2.70 16 41 H 0.10 2.17 7.60 -52.49 -0.40 1.77 16 42 H 0.10 1.27 6.91 -51.93 -0.36 0.91 16 43 H 0.07 0.78 6.70 -51.93 -0.35 0.44 16 44 H 0.08 0.70 6.47 -51.93 -0.34 0.37 16 45 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 361.14 15.07 5.44 5.44 Total: -1.00 -29.79 361.14 -10.18 -39.97 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -6.22 Total: 7.68 kcal Atomic # 6 Polarization: -33.20 SS G_CDS: -1.81 Total: -35.01 kcal Atomic # 7 Polarization: -33.36 SS G_CDS: 0.24 Total: -33.13 kcal Atomic # 8 Polarization: -45.89 SS G_CDS: -2.18 Total: -48.07 kcal Atomic # 14 Polarization: 16.85 SS G_CDS: -5.03 Total: 11.81 kcal Atomic # 16 Polarization: 51.92 SS G_CDS: -0.62 Total: 51.30 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.79 -10.18 -39.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386878175.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.735 kcal (2) G-P(sol) polarization free energy of solvation -29.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds