Wall clock time and date at job start Sat Apr 11 2020 05:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42897 * 113.99727 * 2 1 4 4 C 1.52999 * 109.46545 * 299.97298 * 3 2 1 5 5 C 1.53045 * 109.45826 * 180.02562 * 3 2 1 6 6 C 1.53195 * 109.31380 * 178.61476 * 5 3 2 7 7 N 1.46927 * 108.77110 * 54.63464 * 6 5 3 8 8 S 1.65606 * 120.62798 * 126.36968 * 7 6 5 9 9 O 1.42095 * 106.40363 * 336.45975 * 8 7 6 10 10 O 1.42100 * 106.40121 * 203.53636 * 8 7 6 11 11 C 1.76203 * 107.21784 * 89.99963 * 8 7 6 12 12 C 1.38631 * 119.74995 * 89.99661 * 11 8 7 13 13 C 1.37618 * 120.24580 * 179.97438 * 12 11 8 14 14 C 1.40715 * 119.74953 * 0.02562 * 13 12 11 15 15 C 1.41397 * 120.24850 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99675 * 335.21465 * 15 14 13 17 17 C 1.39941 * 120.00117 * 154.93259 * 15 14 13 18 18 N 1.30831 * 120.00117 * 342.49004 * 17 15 14 19 19 Si 1.86797 * 120.00094 * 162.49029 * 17 15 14 20 20 H 1.48500 * 109.47305 * 94.51868 * 19 17 15 21 21 H 1.48502 * 109.47201 * 214.52371 * 19 17 15 22 22 H 1.48507 * 109.46854 * 334.52024 * 19 17 15 23 23 C 1.40717 * 119.50812 * 0.26734 * 14 13 12 24 24 C 1.37619 * 119.74399 * 359.42832 * 23 14 13 25 25 C 1.46921 * 118.74226 * 306.64288 * 7 6 5 26 26 C 1.52762 * 109.00987 * 53.31177 * 25 7 6 27 27 H 1.09000 * 109.46668 * 299.99707 * 1 2 3 28 28 H 1.08997 * 109.47402 * 59.99826 * 1 2 3 29 29 H 1.09002 * 109.46670 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46954 * 300.03457 * 4 3 2 31 31 H 1.09006 * 109.46620 * 60.02621 * 4 3 2 32 32 H 1.09000 * 109.47360 * 180.02562 * 4 3 2 33 33 H 1.08999 * 109.49695 * 58.66336 * 5 3 2 34 34 H 1.09000 * 109.52665 * 298.58138 * 5 3 2 35 35 H 1.08993 * 109.58698 * 294.85142 * 6 5 3 36 36 H 1.09000 * 109.58672 * 174.41733 * 6 5 3 37 37 H 1.07994 * 119.87767 * 359.97438 * 12 11 8 38 38 H 1.08011 * 120.12658 * 179.97438 * 13 12 11 39 39 H 0.96999 * 119.99768 * 179.97438 * 18 17 15 40 40 H 1.07997 * 120.12568 * 179.70175 * 23 14 13 41 41 H 1.07996 * 119.87774 * 180.31043 * 24 23 14 42 42 H 1.09003 * 109.59191 * 173.14798 * 25 7 6 43 43 H 1.09002 * 109.58670 * 293.57343 * 25 7 6 44 44 H 1.08995 * 109.56421 * 185.55896 * 26 25 7 45 45 H 1.08998 * 109.38728 * 65.51185 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5591 2.0643 -1.2496 5 6 3.5358 1.1843 -0.0006 6 6 4.1553 2.5850 -0.0356 7 7 3.6127 3.3700 1.0816 8 16 4.6254 4.1209 2.1554 9 8 5.8586 3.4168 2.1037 10 8 3.8809 4.2976 3.3528 11 6 4.9475 5.7352 1.5271 12 6 4.1209 6.7896 1.8833 13 6 4.3634 8.0547 1.3989 14 6 5.4548 8.2758 0.5387 15 6 5.7140 9.5714 0.0353 16 1 4.9124 10.2911 -0.0418 17 6 7.0103 9.9231 -0.3574 18 7 8.0315 9.2106 0.0441 19 14 7.2827 11.4099 -1.4550 20 1 7.5856 12.5965 -0.6149 21 1 8.4222 11.1475 -2.3703 22 1 6.0566 11.6679 -2.2523 23 6 6.2834 7.1968 0.1790 24 6 6.0258 5.9414 0.6804 25 6 2.1547 3.4710 1.2317 26 6 1.5576 2.0650 1.2492 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8807 1.5229 -2.1393 31 1 0.4725 2.1507 -1.2498 32 1 2.0027 3.0600 -1.2500 33 1 3.8558 0.6230 -0.8785 34 1 3.8605 0.6654 0.9012 35 1 3.9062 3.0713 -0.9787 36 1 5.2380 2.5083 0.0637 37 1 3.2836 6.6176 2.5433 38 1 3.7179 8.8748 1.6774 39 1 8.9299 9.4543 -0.2285 40 1 7.1210 7.3542 -0.4844 41 1 6.6633 5.1127 0.4098 42 1 1.9177 3.9788 2.1667 43 1 1.7391 4.0310 0.3939 44 1 0.4697 2.1306 1.2608 45 1 1.8999 1.5376 2.1395 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386878175.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:06 Heat of formation + Delta-G solvation = -126.274641 kcal Electronic energy + Delta-G solvation = -28182.149307 eV Core-core repulsion = 24290.223962 eV Total energy + Delta-G solvation = -3891.925345 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.85819 -39.37706 -38.23658 -37.70564 -36.79912 -35.79963 -33.11429 -32.22456 -32.06132 -31.29562 -28.61733 -27.73048 -27.58647 -24.55370 -24.15060 -23.26862 -22.93490 -20.63908 -19.46003 -19.41423 -18.85760 -18.18327 -17.25577 -17.19382 -16.94324 -16.36684 -16.18280 -15.86671 -15.75776 -15.43224 -15.14409 -14.93936 -14.58718 -14.17143 -14.13701 -13.98534 -13.85308 -13.54426 -13.48377 -13.09863 -13.02554 -12.96979 -12.95724 -12.87362 -12.76732 -12.56263 -12.50216 -12.28097 -12.09404 -12.03829 -11.70550 -11.54358 -11.32532 -11.20565 -11.14943 -10.39885 -9.96976 -9.75578 -9.55111 -8.87105 -6.64759 -0.37945 0.48636 1.05496 1.35954 1.41935 1.53092 2.10454 2.15452 2.52948 2.81120 2.93570 3.44314 3.50738 3.69149 3.73165 3.98740 4.12502 4.12667 4.30400 4.32239 4.36371 4.50818 4.51756 4.54468 4.59664 4.66248 4.77018 4.84465 4.87113 4.88748 4.93505 4.95183 4.99931 5.10207 5.16075 5.20331 5.23048 5.24099 5.45206 5.52162 5.59027 5.67652 5.79162 5.93622 6.15626 6.34813 6.49143 6.68406 6.81088 8.08441 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019891 B = 0.002966 C = 0.002844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.347654 B = 9439.151268 C = 9842.498507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.400 6.400 3 C 0.116 3.884 4 C -0.180 4.180 5 C -0.115 4.115 6 C 0.116 3.884 7 N -0.997 5.997 8 S 2.718 3.282 9 O -1.002 7.002 10 O -0.998 6.998 11 C -0.795 4.795 12 C -0.002 4.002 13 C -0.256 4.256 14 C 0.112 3.888 15 C -0.466 4.466 16 H 0.093 0.907 17 C 0.033 3.967 18 N -0.800 5.800 19 Si 0.992 3.008 20 H -0.260 1.260 21 H -0.264 1.264 22 H -0.252 1.252 23 C -0.206 4.206 24 C -0.020 4.020 25 C 0.115 3.885 26 C -0.153 4.153 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.126 0.874 38 H 0.112 0.888 39 H 0.298 0.702 40 H 0.109 0.891 41 H 0.114 0.886 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.100 0.900 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.964 -10.876 -5.357 17.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.320 6.320 3 C 0.077 3.923 4 C -0.237 4.237 5 C -0.154 4.154 6 C -0.008 4.008 7 N -0.836 5.836 8 S 2.815 3.185 9 O -0.992 6.992 10 O -0.989 6.989 11 C -0.888 4.888 12 C -0.021 4.021 13 C -0.276 4.276 14 C 0.108 3.892 15 C -0.493 4.493 16 H 0.111 0.889 17 C -0.186 4.186 18 N -0.423 5.423 19 Si 0.811 3.189 20 H -0.185 1.185 21 H -0.188 1.188 22 H -0.176 1.176 23 C -0.226 4.226 24 C -0.040 4.040 25 C -0.009 4.009 26 C -0.192 4.192 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.111 0.889 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.115 0.885 34 H 0.080 0.920 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.143 0.857 38 H 0.130 0.870 39 H 0.109 0.891 40 H 0.127 0.873 41 H 0.132 0.868 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.118 0.882 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.269 -11.460 -4.564 16.708 hybrid contribution 0.339 1.412 -0.511 1.539 sum -10.929 -10.048 -5.075 15.690 Atomic orbital electron populations 1.22960 0.80251 1.03533 1.01059 1.87928 1.21087 1.27786 1.95174 1.21397 0.93280 0.83031 0.94577 1.22503 1.02613 1.01401 0.97216 1.21806 0.93192 0.96564 1.03833 1.21626 0.98982 0.90621 0.89603 1.57644 1.16705 1.64754 1.44468 1.00521 0.71922 0.73210 0.72797 1.93440 1.45074 1.73516 1.87180 1.93436 1.72922 1.87562 1.44980 1.29690 1.11937 1.20780 1.26393 1.20439 0.95469 0.92175 0.94054 1.21267 1.03834 0.96980 1.05508 1.18204 0.90282 0.93667 0.87015 1.20225 0.95736 0.98031 1.35307 0.88908 1.27041 0.94733 1.01649 0.95152 1.69869 1.01267 1.37928 1.33263 0.85033 0.79497 0.76407 0.77952 1.18461 1.18786 1.17562 1.21337 1.03418 0.92291 1.05583 1.20438 0.93492 0.97003 0.93070 1.21525 0.77924 0.97722 1.03770 1.22412 1.02243 0.95800 0.98770 0.93152 0.92664 0.88854 0.91320 0.90877 0.90629 0.88516 0.91966 0.89121 0.89211 0.85652 0.86990 0.89079 0.87267 0.86776 0.89213 0.89174 0.88153 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.21 113.37 1.16 1.41 16 2 O -0.40 -8.27 10.35 -148.98 -1.54 -9.81 16 3 C 0.12 2.30 0.88 -10.76 -0.01 2.29 16 4 C -0.18 -2.91 7.49 71.98 0.54 -2.37 16 5 C -0.11 -2.51 5.27 30.67 0.16 -2.35 16 6 C 0.12 2.87 6.01 86.36 0.52 3.39 16 7 N -1.00 -28.69 3.30 -513.85 -1.69 -30.38 16 8 S 2.72 103.43 5.73 -56.49 -0.32 103.11 16 9 O -1.00 -42.58 15.85 -128.00 -2.03 -44.61 16 10 O -1.00 -41.14 15.84 -128.00 -2.03 -43.17 16 11 C -0.79 -34.66 6.00 22.46 0.13 -34.52 16 12 C 0.00 -0.07 9.49 22.22 0.21 0.14 16 13 C -0.26 -12.09 9.80 22.73 0.22 -11.86 16 14 C 0.11 5.76 5.57 -21.29 -0.12 5.64 16 15 C -0.47 -23.11 9.05 23.46 0.21 -22.90 16 16 H 0.09 4.31 7.91 -2.91 -0.02 4.29 16 17 C 0.03 1.54 5.14 85.25 0.44 1.98 16 18 N -0.80 -39.08 11.00 21.83 0.24 -38.84 16 19 Si 0.99 34.29 29.59 68.60 2.03 36.32 16 20 H -0.26 -8.69 7.11 99.48 0.71 -7.98 16 21 H -0.26 -8.70 7.11 99.48 0.71 -8.00 16 22 H -0.25 -8.46 7.11 99.48 0.71 -7.75 16 23 C -0.21 -10.53 8.69 22.73 0.20 -10.33 16 24 C -0.02 -0.93 9.49 22.22 0.21 -0.72 16 25 C 0.12 2.71 5.98 86.22 0.52 3.23 16 26 C -0.15 -3.09 4.70 30.53 0.14 -2.94 16 27 H 0.05 0.63 6.38 -2.39 -0.02 0.62 16 28 H 0.05 0.64 6.42 -2.39 -0.02 0.63 16 29 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.07 0.97 6.54 -2.38 -0.02 0.96 16 32 H 0.07 1.27 4.99 -2.39 -0.01 1.26 16 33 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.09 1.91 6.69 -2.39 -0.02 1.89 16 36 H 0.09 2.39 6.92 -2.39 -0.02 2.37 16 37 H 0.13 4.82 7.60 -2.91 -0.02 4.79 16 38 H 0.11 4.84 8.06 -2.90 -0.02 4.82 16 39 H 0.30 12.95 8.30 -92.71 -0.77 12.18 16 40 H 0.11 5.71 6.21 -2.91 -0.02 5.69 16 41 H 0.11 4.91 7.60 -2.91 -0.02 4.89 16 42 H 0.09 2.23 6.91 -2.39 -0.02 2.21 16 43 H 0.09 1.78 6.70 -2.39 -0.02 1.76 16 44 H 0.10 1.54 6.47 -2.39 -0.02 1.52 16 45 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -64.56 361.14 0.20 -64.36 By element: Atomic # 1 Polarization: 31.93 SS G_CDS: 1.01 Total: 32.94 kcal Atomic # 6 Polarization: -74.46 SS G_CDS: 4.54 Total: -69.93 kcal Atomic # 7 Polarization: -67.77 SS G_CDS: -1.45 Total: -69.22 kcal Atomic # 8 Polarization: -91.99 SS G_CDS: -5.60 Total: -97.59 kcal Atomic # 14 Polarization: 34.29 SS G_CDS: 2.03 Total: 36.32 kcal Atomic # 16 Polarization: 103.43 SS G_CDS: -0.32 Total: 103.11 kcal Total: -64.56 0.20 -64.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386878175.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.910 kcal (2) G-P(sol) polarization free energy of solvation -64.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds