Wall clock time and date at job start Sat Apr 11 2020 05:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38249 * 120.00118 * 2 1 4 4 C 1.38214 * 120.00112 * 180.02562 * 3 2 1 5 5 C 1.38255 * 119.99707 * 359.76653 * 4 3 2 6 6 C 1.38211 * 120.00175 * 0.46508 * 5 4 3 7 7 C 1.50695 * 120.00268 * 179.79007 * 6 5 4 8 8 S 1.81395 * 109.47239 * 269.72782 * 7 6 5 9 9 O 1.42103 * 108.57924 * 65.50729 * 8 7 6 10 10 O 1.42108 * 108.57696 * 294.48601 * 8 7 6 11 11 C 1.81399 * 101.92480 * 179.97438 * 8 7 6 12 12 C 1.53006 * 109.47004 * 179.97438 * 11 8 7 13 13 C 1.50699 * 109.46866 * 179.97438 * 12 11 8 14 14 O 1.21282 * 120.00040 * 359.97438 * 13 12 11 15 15 N 1.34779 * 120.00033 * 180.02562 * 13 12 11 16 16 C 1.46500 * 120.00165 * 179.97438 * 15 13 12 17 17 H 1.09001 * 109.46886 * 324.99885 * 16 15 13 18 18 C 1.53002 * 109.47146 * 84.99328 * 16 15 13 19 19 C 1.50698 * 109.47308 * 204.99836 * 16 15 13 20 20 H 1.08003 * 119.99850 * 359.97438 * 19 16 15 21 21 C 1.37872 * 119.99927 * 180.02562 * 19 16 15 22 22 N 1.31513 * 120.00571 * 359.97438 * 21 19 16 23 23 Si 1.86802 * 119.99843 * 180.02562 * 21 19 16 24 24 H 1.48504 * 109.47499 * 89.99799 * 23 21 19 25 25 H 1.48496 * 109.47282 * 209.99903 * 23 21 19 26 26 H 1.48507 * 109.46986 * 329.99792 * 23 21 19 27 27 C 1.38215 * 119.99534 * 179.97438 * 2 1 3 28 28 H 1.08995 * 109.47129 * 270.01895 * 1 2 3 29 29 H 1.08999 * 109.46996 * 30.02264 * 1 2 3 30 30 H 1.09003 * 109.47158 * 150.02178 * 1 2 3 31 31 H 1.08007 * 120.00420 * 359.97438 * 3 2 1 32 32 H 1.08006 * 120.00045 * 179.97438 * 4 3 2 33 33 H 1.08000 * 119.99796 * 180.25839 * 5 4 3 34 34 H 1.09004 * 109.47668 * 149.72210 * 7 6 5 35 35 H 1.09004 * 109.47050 * 29.72129 * 7 6 5 36 36 H 1.09000 * 109.47234 * 59.99870 * 11 8 7 37 37 H 1.09001 * 109.47232 * 299.99380 * 11 8 7 38 38 H 1.08993 * 109.46955 * 300.00150 * 12 11 8 39 39 H 1.09000 * 109.47050 * 59.99979 * 12 11 8 40 40 H 0.96996 * 119.99850 * 359.97438 * 15 13 12 41 41 H 1.09001 * 109.46947 * 180.02562 * 18 16 15 42 42 H 1.08999 * 109.47584 * 300.00425 * 18 16 15 43 43 H 1.09006 * 109.46479 * 60.00161 * 18 16 15 44 44 H 0.96999 * 120.00271 * 180.02562 * 22 21 19 45 45 H 1.07994 * 120.00464 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 -0.0001 0.0038 6 6 3.5806 -1.1970 -0.0010 7 6 4.3340 -2.5021 -0.0011 8 16 4.6353 -3.0264 -1.7113 9 8 5.5087 -2.0885 -2.3252 10 8 3.3855 -3.3143 -2.3233 11 6 5.5352 -4.5833 -1.4731 12 6 5.8813 -5.1860 -2.8362 13 6 6.6294 -6.4791 -2.6383 14 8 6.8632 -6.8790 -1.5174 15 7 7.0397 -7.1907 -3.7068 16 6 7.7675 -8.4475 -3.5145 17 1 8.4037 -8.3676 -2.6330 18 6 6.7690 -9.5905 -3.3207 19 6 8.6199 -8.7249 -4.7258 20 1 8.6192 -8.0342 -5.5562 21 6 9.3998 -9.8608 -4.7745 22 7 9.4002 -10.7020 -3.7636 23 14 10.4570 -10.2042 -6.2758 24 1 11.7971 -9.5926 -6.0881 25 1 10.6030 -11.6713 -6.4533 26 1 9.8113 -9.6218 -7.4796 27 6 2.1980 -1.1970 0.0005 28 1 -0.3633 0.0003 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 1.6584 2.1327 -0.0004 32 1 4.1205 2.1326 -0.0010 33 1 5.3517 -0.0001 0.0076 34 1 3.7454 -3.2616 0.5135 35 1 5.2869 -2.3716 0.5120 36 1 4.9115 -5.2818 -0.9152 37 1 6.4527 -4.3912 -0.9169 38 1 4.9637 -5.3781 -3.3921 39 1 6.5048 -4.4877 -3.3944 40 1 6.8530 -6.8707 -4.6033 41 1 7.3106 -10.5255 -3.1772 42 1 6.1525 -9.3899 -2.4446 43 1 6.1328 -9.6703 -4.2022 44 1 9.9492 -11.5010 -3.7977 45 1 1.6581 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411744844.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:18 Heat of formation + Delta-G solvation = -124.694181 kcal Electronic energy + Delta-G solvation = -26173.066178 eV Core-core repulsion = 22281.209367 eV Total energy + Delta-G solvation = -3891.856811 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.63414 -40.40738 -38.03659 -37.08846 -36.81164 -34.67939 -34.40793 -34.04310 -32.98629 -30.88046 -28.80882 -27.71163 -27.36072 -26.12361 -23.20733 -22.81235 -21.81098 -21.14144 -19.87746 -19.08980 -18.04271 -17.61049 -17.42042 -17.21680 -17.05195 -16.63581 -16.58411 -16.15627 -15.97389 -15.71291 -14.85562 -14.65707 -14.60766 -14.37580 -14.27089 -13.99429 -13.73433 -13.68340 -13.55282 -13.18296 -13.15354 -13.07133 -12.97907 -12.94454 -12.89840 -12.76456 -12.43939 -12.27008 -12.22595 -12.13943 -12.03957 -11.94352 -11.63719 -11.12283 -10.78879 -10.59086 -9.78221 -9.77824 -9.56081 -8.18787 -6.36091 -1.16144 0.36434 0.40452 1.44917 1.44973 1.55876 1.75212 1.76376 2.30884 2.46092 2.70808 2.81797 3.03529 3.11687 3.40708 3.44075 3.71352 3.87463 3.98378 3.99736 4.15414 4.21027 4.41585 4.42438 4.49048 4.54420 4.57611 4.74821 4.76883 4.83975 4.87868 4.91614 4.94219 5.08344 5.08840 5.28237 5.42105 5.45760 5.49646 5.59430 5.62441 5.67800 5.88493 6.02809 6.08903 6.71562 6.91886 7.30838 7.50803 8.87390 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.033231 B = 0.001897 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.388773 B =14754.133829 C =14976.953790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.099 4.099 3 C -0.119 4.119 4 C -0.124 4.124 5 C -0.127 4.127 6 C -0.106 4.106 7 C -0.553 4.553 8 S 2.427 3.573 9 O -0.965 6.965 10 O -0.964 6.964 11 C -0.593 4.593 12 C -0.137 4.137 13 C 0.504 3.496 14 O -0.592 6.592 15 N -0.708 5.708 16 C 0.267 3.733 17 H 0.002 0.998 18 C -0.135 4.135 19 C -0.548 4.548 20 H 0.073 0.927 21 C 0.014 3.986 22 N -0.917 5.917 23 Si 0.973 3.027 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.261 1.261 27 C -0.124 4.124 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.140 0.860 34 H 0.171 0.829 35 H 0.172 0.828 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.407 0.593 41 H 0.067 0.933 42 H 0.015 0.985 43 H 0.040 0.960 44 H 0.266 0.734 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.843 23.397 8.299 29.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.099 4.099 3 C -0.138 4.138 4 C -0.142 4.142 5 C -0.147 4.147 6 C -0.108 4.108 7 C -0.683 4.683 8 S 2.614 3.386 9 O -0.962 6.962 10 O -0.961 6.961 11 C -0.722 4.722 12 C -0.177 4.177 13 C 0.290 3.710 14 O -0.474 6.474 15 N -0.357 5.357 16 C 0.164 3.836 17 H 0.019 0.981 18 C -0.194 4.194 19 C -0.586 4.586 20 H 0.091 0.909 21 C -0.187 4.187 22 N -0.555 5.555 23 Si 0.797 3.203 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.185 1.185 27 C -0.143 4.143 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.165 0.835 32 H 0.166 0.834 33 H 0.158 0.842 34 H 0.189 0.811 35 H 0.189 0.811 36 H 0.169 0.831 37 H 0.168 0.832 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.242 0.758 41 H 0.085 0.915 42 H 0.034 0.966 43 H 0.059 0.941 44 H 0.075 0.925 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -15.818 23.301 8.304 29.362 hybrid contribution 1.024 -1.006 -0.148 1.443 sum -14.794 22.296 8.156 27.973 Atomic orbital electron populations 1.20874 0.89280 1.03760 1.03356 1.20307 0.97756 0.92915 0.98928 1.21502 0.94534 0.98526 0.99221 1.21509 0.94784 0.98687 0.99186 1.21479 1.01285 0.92230 0.99661 1.19162 0.93955 0.93004 1.04668 1.29228 1.11911 1.04567 1.22561 1.07865 0.75037 0.76703 0.79012 1.93538 1.67551 1.60602 1.74533 1.93537 1.42975 1.85043 1.74589 1.30144 1.16354 1.20474 1.05184 1.21471 1.03552 0.95384 0.97333 1.20916 0.79299 0.86140 0.84601 1.90622 1.58974 1.72468 1.25343 1.46331 1.56114 1.24158 1.09066 1.18388 0.89336 0.79873 0.96006 0.98054 1.21910 0.98093 1.01870 0.97503 1.21556 1.26090 1.07880 1.03073 0.90864 1.25801 0.97887 0.95525 0.99446 1.70043 1.40361 1.12709 1.32379 0.85336 0.78575 0.77194 0.79166 1.20369 1.20933 1.18489 1.21346 0.93393 0.99382 1.00154 0.89890 0.90217 0.91193 0.83495 0.83400 0.84194 0.81123 0.81063 0.83119 0.83230 0.85587 0.85788 0.75813 0.91457 0.96627 0.94097 0.92526 0.84450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 10.01 71.24 0.71 -0.49 16 2 C -0.10 -1.54 5.88 -19.87 -0.12 -1.66 16 3 C -0.12 -1.67 9.70 22.27 0.22 -1.46 16 4 C -0.12 -1.83 10.05 22.27 0.22 -1.60 16 5 C -0.13 -2.17 9.70 22.27 0.22 -1.95 16 6 C -0.11 -1.87 5.14 -19.87 -0.10 -1.97 16 7 C -0.55 -7.08 5.93 71.23 0.42 -6.65 16 8 S 2.43 47.35 4.70 -56.49 -0.27 47.09 16 9 O -0.97 -25.00 18.10 -127.37 -2.30 -27.30 16 10 O -0.96 -24.74 18.10 -127.37 -2.31 -27.05 16 11 C -0.59 -12.05 5.09 71.98 0.37 -11.68 16 12 C -0.14 -3.51 5.71 29.85 0.17 -3.34 16 13 C 0.50 19.10 7.79 87.66 0.68 19.78 16 14 O -0.59 -27.06 15.64 -3.04 -0.05 -27.11 16 15 N -0.71 -28.83 5.07 -446.09 -2.26 -31.09 16 16 C 0.27 13.76 2.56 44.25 0.11 13.87 16 17 H 0.00 0.09 7.58 -2.39 -0.02 0.08 16 18 C -0.13 -6.78 9.26 71.98 0.67 -6.11 16 19 C -0.55 -28.86 8.73 25.60 0.22 -28.64 16 20 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 21 C 0.01 0.72 5.30 84.65 0.45 1.17 16 22 N -0.92 -52.27 11.32 21.45 0.24 -52.03 16 23 Si 0.97 41.91 29.54 68.60 2.03 43.93 16 24 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 25 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 26 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 27 C -0.12 -2.17 9.36 22.27 0.21 -1.96 16 28 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.08 0.63 8.09 -2.39 -0.02 0.61 16 30 H 0.07 0.73 8.09 -2.39 -0.02 0.71 16 31 H 0.15 1.28 8.06 -2.91 -0.02 1.25 16 32 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 33 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 34 H 0.17 1.24 8.09 -2.39 -0.02 1.22 16 35 H 0.17 1.24 8.08 -2.39 -0.02 1.22 16 36 H 0.15 2.71 8.10 -2.39 -0.02 2.70 16 37 H 0.15 2.75 8.10 -2.39 -0.02 2.73 16 38 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 39 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 40 H 0.41 13.84 8.54 -92.71 -0.79 13.05 16 41 H 0.07 3.71 6.07 -2.39 -0.01 3.69 16 42 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 44 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 45 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -80.06 393.72 -0.26 -80.32 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: 0.20 Total: 25.93 kcal Atomic # 6 Polarization: -37.15 SS G_CDS: 4.45 Total: -32.69 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -2.02 Total: -83.12 kcal Atomic # 8 Polarization: -76.80 SS G_CDS: -4.66 Total: -81.46 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.93 kcal Atomic # 16 Polarization: 47.35 SS G_CDS: -0.27 Total: 47.09 kcal Total: -80.06 -0.26 -80.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411744844.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.371 kcal (2) G-P(sol) polarization free energy of solvation -80.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds