Wall clock time and date at job start Sat Apr 11 2020 05:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00266 * 2 1 4 4 C 1.38212 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99650 * 0.28729 * 4 3 2 6 6 C 1.38208 * 120.00082 * 359.50197 * 5 4 3 7 7 C 1.50698 * 120.00206 * 180.26181 * 6 5 4 8 8 S 1.81408 * 109.46853 * 270.21387 * 7 6 5 9 9 O 1.42094 * 108.57870 * 294.48382 * 8 7 6 10 10 O 1.42099 * 108.57569 * 65.51184 * 8 7 6 11 11 C 1.81402 * 101.91998 * 179.97438 * 8 7 6 12 12 C 1.52999 * 109.47014 * 179.97438 * 11 8 7 13 13 C 1.50697 * 109.47070 * 180.02562 * 12 11 8 14 14 O 1.21277 * 120.00285 * 0.02562 * 13 12 11 15 15 N 1.34782 * 119.99799 * 179.97438 * 13 12 11 16 16 C 1.46505 * 119.99601 * 179.97438 * 15 13 12 17 17 C 1.53005 * 109.46536 * 180.02562 * 16 15 13 18 18 C 1.50702 * 109.46761 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00031 * 359.97438 * 18 17 16 20 20 C 1.37876 * 120.00021 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99861 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99929 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47162 * 90.00473 * 22 20 18 24 24 H 1.48501 * 109.47243 * 210.00830 * 22 20 18 25 25 H 1.48499 * 109.47043 * 330.00619 * 22 20 18 26 26 C 1.38215 * 119.99989 * 180.02562 * 2 1 3 27 27 H 1.08994 * 109.47517 * 89.99651 * 1 2 3 28 28 H 1.08997 * 109.46988 * 210.00044 * 1 2 3 29 29 H 1.09009 * 109.46840 * 329.99292 * 1 2 3 30 30 H 1.07999 * 119.99759 * 0.02562 * 3 2 1 31 31 H 1.08002 * 119.99812 * 180.02562 * 4 3 2 32 32 H 1.08004 * 119.99616 * 179.72197 * 5 4 3 33 33 H 1.09005 * 109.47039 * 30.20591 * 7 6 5 34 34 H 1.08995 * 109.47567 * 150.21599 * 7 6 5 35 35 H 1.08992 * 109.47306 * 300.00327 * 11 8 7 36 36 H 1.09001 * 109.46879 * 60.00155 * 11 8 7 37 37 H 1.09004 * 109.47180 * 300.00178 * 12 11 8 38 38 H 1.09001 * 109.47018 * 60.00428 * 12 11 8 39 39 H 0.96992 * 120.00133 * 0.02562 * 15 13 12 40 40 H 1.08993 * 109.46949 * 299.99999 * 16 15 13 41 41 H 1.09001 * 109.47016 * 60.00602 * 16 15 13 42 42 H 1.09004 * 109.47065 * 299.99821 * 17 16 15 43 43 H 1.08993 * 109.47751 * 60.00242 * 17 16 15 44 44 H 0.97001 * 119.99904 * 179.97438 * 21 20 18 45 45 H 1.08001 * 119.99700 * 359.96970 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0001 -0.0049 6 6 3.5806 -1.1970 -0.0005 7 6 4.3341 -2.5021 -0.0005 8 16 4.6364 -3.0257 -1.7109 9 8 3.3872 -3.3134 -2.3238 10 8 5.5103 -2.0876 -2.3237 11 6 5.5362 -4.5827 -1.4726 12 6 5.8832 -5.1849 -2.8356 13 6 6.6302 -6.4787 -2.6376 14 8 6.8616 -6.8800 -1.5168 15 7 7.0400 -7.1905 -3.7063 16 6 7.7666 -8.4480 -3.5138 17 6 8.1136 -9.0502 -4.8769 18 6 8.8605 -10.3441 -4.6789 19 1 9.0674 -10.7009 -3.6808 20 6 9.2806 -11.0718 -5.7720 21 7 9.9319 -12.2012 -5.5993 22 14 8.9233 -10.4543 -7.4984 23 1 10.0410 -9.5903 -7.9563 24 1 8.7828 -11.6112 -8.4188 25 1 7.6621 -9.6703 -7.4926 26 6 2.1981 -1.1970 -0.0005 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5140 30 1 1.6583 2.1326 0.0004 31 1 4.1204 2.1326 0.0010 32 1 5.3517 -0.0001 -0.0091 33 1 5.2866 -2.3718 0.5133 34 1 3.7450 -3.2618 0.5132 35 1 6.4531 -4.3909 -0.9155 36 1 4.9120 -5.2814 -0.9154 37 1 4.9659 -5.3768 -3.3922 38 1 6.5072 -4.4864 -3.3931 39 1 6.8546 -6.8698 -4.6027 40 1 8.6841 -8.2560 -2.9576 41 1 7.1428 -9.1464 -2.9558 42 1 7.1962 -9.2422 -5.4334 43 1 8.7375 -8.3519 -5.4345 44 1 10.2271 -12.7133 -6.3683 45 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412256056.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:06 Heat of formation + Delta-G solvation = -129.368738 kcal Electronic energy + Delta-G solvation = -25637.650548 eV Core-core repulsion = 21745.591033 eV Total energy + Delta-G solvation = -3892.059515 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.76956 -40.41229 -38.04269 -37.09104 -36.72553 -34.81550 -34.68060 -34.21575 -32.99102 -31.98790 -28.84862 -27.76080 -27.42630 -25.37343 -23.16353 -22.64270 -21.92691 -21.34950 -19.88219 -19.03710 -18.58573 -17.61358 -17.45927 -17.22442 -16.89407 -16.79705 -16.54565 -16.28226 -16.20048 -15.73527 -15.55247 -14.89375 -14.65056 -14.51038 -14.36255 -14.28956 -13.99194 -13.73451 -13.58252 -13.36485 -13.20584 -13.16122 -13.07862 -13.04482 -12.94257 -12.48660 -12.21705 -12.21519 -12.16719 -12.05503 -11.94883 -11.77374 -11.66573 -11.52259 -10.92664 -10.79616 -10.08252 -9.78402 -9.56604 -8.30948 -6.38254 -1.16773 0.35836 0.39883 1.39025 1.41248 1.52363 1.57918 1.75733 2.17574 2.36040 2.60898 2.78802 3.03240 3.04324 3.37406 3.42177 3.70861 3.85252 3.86077 3.98999 4.14916 4.20558 4.32476 4.40759 4.41446 4.42073 4.48501 4.53321 4.57609 4.74233 4.76502 4.82839 4.84947 4.93687 5.08464 5.13533 5.27510 5.39282 5.41278 5.44920 5.49046 5.62082 5.63029 6.02223 6.20854 6.55948 6.69955 7.22213 7.26607 8.85684 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.032751 B = 0.001698 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.725971 B =16483.510037 C =16608.384536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.099 4.099 3 C -0.121 4.121 4 C -0.124 4.124 5 C -0.128 4.128 6 C -0.106 4.106 7 C -0.554 4.554 8 S 2.425 3.575 9 O -0.965 6.965 10 O -0.965 6.965 11 C -0.594 4.594 12 C -0.139 4.139 13 C 0.513 3.487 14 O -0.582 6.582 15 N -0.719 5.719 16 C 0.143 3.857 17 C -0.015 4.015 18 C -0.540 4.540 19 H 0.029 0.971 20 C 0.005 3.995 21 N -0.950 5.950 22 Si 0.958 3.042 23 H -0.265 1.265 24 H -0.287 1.287 25 H -0.237 1.237 26 C -0.124 4.124 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.141 0.859 33 H 0.172 0.828 34 H 0.171 0.829 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.416 0.584 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.037 0.963 43 H 0.036 0.964 44 H 0.268 0.732 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.798 30.869 11.412 37.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.099 4.099 3 C -0.139 4.139 4 C -0.142 4.142 5 C -0.147 4.147 6 C -0.108 4.108 7 C -0.684 4.684 8 S 2.612 3.388 9 O -0.962 6.962 10 O -0.962 6.962 11 C -0.723 4.723 12 C -0.180 4.180 13 C 0.299 3.701 14 O -0.463 6.463 15 N -0.370 5.370 16 C 0.019 3.981 17 C -0.053 4.053 18 C -0.579 4.579 19 H 0.048 0.952 20 C -0.193 4.193 21 N -0.590 5.590 22 Si 0.780 3.220 23 H -0.190 1.190 24 H -0.213 1.213 25 H -0.160 1.160 26 C -0.143 4.143 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.164 0.836 31 H 0.165 0.835 32 H 0.159 0.841 33 H 0.190 0.810 34 H 0.188 0.812 35 H 0.171 0.829 36 H 0.171 0.829 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.252 0.748 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.077 0.923 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -18.779 30.815 11.297 37.813 hybrid contribution 0.651 -0.940 -0.187 1.159 sum -18.128 29.874 11.109 36.667 Atomic orbital electron populations 1.20874 0.89356 1.03945 1.03132 1.20304 0.97714 0.92964 0.98933 1.21500 0.94588 0.98523 0.99296 1.21507 0.94748 0.98749 0.99192 1.21481 1.01304 0.92211 0.99667 1.19164 0.93905 0.93091 1.04590 1.29243 1.11879 1.04443 1.22805 1.07895 0.75097 0.76892 0.78898 1.93544 1.43102 1.85085 1.74475 1.93545 1.67503 1.60661 1.74473 1.30143 1.16493 1.20338 1.05309 1.21503 1.03861 0.95184 0.97407 1.20885 0.78849 0.86102 0.84229 1.90669 1.58390 1.71970 1.25264 1.46114 1.57264 1.23599 1.10060 1.21058 0.94702 0.83861 0.98503 1.19677 0.97106 0.94803 0.93727 1.21263 1.36528 1.06491 0.93588 0.95248 1.26070 0.93963 0.94614 1.04605 1.70073 1.40022 1.16265 1.32603 0.85553 0.80547 0.78331 0.77535 1.19037 1.21287 1.15989 1.21349 0.93458 0.99325 1.00172 0.90616 0.90751 0.90027 0.83634 0.83475 0.84111 0.81031 0.81152 0.82906 0.82935 0.85220 0.85198 0.74756 0.93582 0.93578 0.94447 0.94578 0.92339 0.84404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 10.01 71.24 0.71 -0.35 16 2 C -0.10 -1.39 5.88 -19.87 -0.12 -1.50 16 3 C -0.12 -1.52 9.70 22.27 0.22 -1.31 16 4 C -0.12 -1.63 10.05 22.27 0.22 -1.41 16 5 C -0.13 -1.90 9.70 22.27 0.22 -1.69 16 6 C -0.11 -1.61 5.14 -19.87 -0.10 -1.71 16 7 C -0.55 -5.35 5.93 71.24 0.42 -4.92 16 8 S 2.42 37.61 4.70 -56.49 -0.27 37.34 16 9 O -0.96 -21.29 18.10 -127.37 -2.31 -23.60 16 10 O -0.96 -21.23 18.10 -127.37 -2.30 -23.53 16 11 C -0.59 -8.63 5.09 71.98 0.37 -8.26 16 12 C -0.14 -2.56 5.71 29.85 0.17 -2.39 16 13 C 0.51 14.61 7.83 87.66 0.69 15.29 16 14 O -0.58 -21.15 15.98 -3.02 -0.05 -21.20 16 15 N -0.72 -21.29 5.56 -463.05 -2.57 -23.87 16 16 C 0.14 5.65 5.61 86.38 0.48 6.14 16 17 C -0.02 -0.67 4.16 29.85 0.12 -0.55 16 18 C -0.54 -30.61 9.66 25.60 0.25 -30.37 16 19 H 0.03 1.87 7.99 -2.91 -0.02 1.84 16 20 C 0.00 0.27 5.47 84.65 0.46 0.73 16 21 N -0.95 -58.95 13.96 21.45 0.30 -58.65 16 22 Si 0.96 42.13 27.47 68.60 1.88 44.01 16 23 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 24 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 25 H -0.24 -9.25 6.54 99.48 0.65 -8.59 16 26 C -0.12 -1.92 9.36 22.27 0.21 -1.72 16 27 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 0.58 8.09 -2.39 -0.02 0.56 16 29 H 0.08 0.50 8.09 -2.38 -0.02 0.48 16 30 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 31 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 32 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 33 H 0.17 0.69 8.09 -2.39 -0.02 0.67 16 34 H 0.17 0.71 8.09 -2.39 -0.02 0.69 16 35 H 0.15 1.87 8.10 -2.39 -0.02 1.85 16 36 H 0.15 1.87 8.10 -2.39 -0.02 1.85 16 37 H 0.13 1.88 8.14 -2.38 -0.02 1.86 16 38 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.42 9.42 8.47 -92.71 -0.79 8.64 16 40 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.04 1.54 7.20 -2.38 -0.02 1.52 16 43 H 0.04 1.47 7.57 -2.39 -0.02 1.45 16 44 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 45 H 0.14 1.76 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -85.49 394.94 -0.85 -86.33 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 0.14 Total: 17.17 kcal Atomic # 6 Polarization: -38.33 SS G_CDS: 4.32 Total: -34.01 kcal Atomic # 7 Polarization: -80.24 SS G_CDS: -2.27 Total: -82.52 kcal Atomic # 8 Polarization: -63.67 SS G_CDS: -4.66 Total: -68.33 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 1.88 Total: 44.01 kcal Atomic # 16 Polarization: 37.61 SS G_CDS: -0.27 Total: 37.34 kcal Total: -85.49 -0.85 -86.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412256056.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.035 kcal (2) G-P(sol) polarization free energy of solvation -85.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds