Wall clock time and date at job start Sat Apr 11 2020 05:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47599 * 2 1 4 4 C 1.53000 * 109.47317 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47298 * 55.00109 * 4 3 2 6 6 O 1.42893 * 109.47152 * 294.99827 * 4 3 2 7 7 C 1.52997 * 109.46967 * 175.00055 * 4 3 2 8 8 H 1.09005 * 109.47479 * 300.00221 * 7 4 3 9 9 C 1.53000 * 109.47291 * 179.97438 * 7 4 3 10 10 O 1.42899 * 109.47251 * 305.00196 * 9 7 4 11 11 N 1.46503 * 109.47440 * 59.99725 * 7 4 3 12 12 C 1.34774 * 120.00214 * 204.99715 * 11 7 4 13 13 O 1.21549 * 119.99982 * 0.02562 * 12 11 7 14 14 C 1.47862 * 119.99902 * 179.97438 * 12 11 7 15 15 C 1.39678 * 120.10153 * 359.72848 * 14 12 11 16 16 C 1.38043 * 120.03609 * 179.74415 * 15 14 12 17 17 C 1.38169 * 120.24527 * 0.55375 * 16 15 14 18 18 C 1.39187 * 120.20496 * 359.70179 * 17 16 15 19 19 S 1.76200 * 120.02463 * 180.02562 * 18 17 16 20 20 C 1.76201 * 99.99658 * 265.52692 * 19 18 17 21 21 H 1.07997 * 120.00549 * 5.11450 * 20 19 18 22 22 C 1.38733 * 119.99984 * 185.12026 * 20 19 18 23 23 N 1.31628 * 119.99470 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00147 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47000 * 60.00166 * 24 22 20 26 26 H 1.48500 * 109.47053 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47290 * 300.00303 * 24 22 20 28 28 C 1.38874 * 119.95368 * 0.02562 * 18 17 16 29 29 H 1.09000 * 109.47590 * 59.99795 * 1 2 3 30 30 H 1.09001 * 109.47580 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46875 * 299.99753 * 1 2 3 32 32 H 1.09004 * 109.46875 * 240.00247 * 2 1 3 33 33 H 1.09000 * 109.47590 * 120.00205 * 2 1 3 34 34 H 1.09000 * 109.47021 * 59.99744 * 3 2 1 35 35 H 1.09000 * 109.47068 * 300.00188 * 3 2 1 36 36 H 0.96705 * 114.00230 * 300.00272 * 6 4 3 37 37 H 1.09004 * 109.46949 * 65.00122 * 9 7 4 38 38 H 1.09001 * 109.47638 * 184.99554 * 9 7 4 39 39 H 0.96696 * 114.00312 * 179.97438 * 10 9 7 40 40 H 0.96997 * 119.99326 * 25.00038 * 11 7 4 41 41 H 1.08000 * 119.97848 * 359.97438 * 15 14 12 42 42 H 1.08004 * 119.87247 * 180.27298 * 16 15 14 43 43 H 1.07998 * 119.90373 * 179.72164 * 17 16 15 44 44 H 0.97004 * 119.99700 * 180.02562 * 23 22 20 45 45 H 1.08003 * 120.12215 * 180.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8531 -0.8427 6 8 4.0468 0.8728 1.2201 7 6 4.0800 2.8794 -0.1264 8 1 3.7163 3.3139 -1.0575 9 6 5.6100 2.8794 -0.1264 10 8 6.0864 2.2058 1.0404 11 7 3.5921 3.6715 1.0054 12 6 3.4635 5.0079 0.8869 13 8 3.7518 5.5558 -0.1591 14 6 2.9705 5.8072 2.0290 15 6 2.6322 5.1789 3.2297 16 6 2.1772 5.9271 4.2968 17 6 2.0434 7.2973 4.1794 18 6 2.3725 7.9332 2.9858 19 16 2.2006 9.6809 2.8415 20 6 0.5907 9.7723 2.1311 21 1 0.0060 8.8737 2.0010 22 6 0.0742 10.9987 1.7388 23 7 0.7867 12.0940 1.8978 24 14 -1.6321 11.0955 0.9851 25 1 -2.6315 10.5789 1.9545 26 1 -1.9480 12.5085 0.6550 27 1 -1.6738 10.2762 -0.2527 28 6 2.8364 7.1894 1.9088 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.7618 1.3472 2.0131 37 1 5.9733 2.3656 -1.0164 38 1 5.9734 3.9071 -0.1264 39 1 7.0503 2.1673 1.1063 40 1 3.3618 3.2341 1.8399 41 1 2.7303 4.1076 3.3245 42 1 1.9206 5.4391 5.2255 43 1 1.6826 7.8767 5.0163 44 1 0.4255 12.9515 1.6239 45 1 3.0930 7.6801 0.9815 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412538500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:10 Heat of formation + Delta-G solvation = -127.839761 kcal Electronic energy + Delta-G solvation = -26989.918493 eV Core-core repulsion = 23097.925280 eV Total energy + Delta-G solvation = -3891.993214 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.44863 -38.82260 -37.61965 -36.51400 -34.40644 -34.28624 -32.52071 -31.54577 -30.59830 -29.83847 -28.16999 -25.58331 -24.42195 -23.71090 -22.35794 -21.46951 -21.18359 -20.39869 -18.59266 -17.64014 -17.54762 -16.82618 -16.31284 -15.78529 -15.67623 -15.27183 -15.11070 -14.86327 -14.56998 -14.42177 -14.10238 -13.86961 -13.79811 -13.61599 -13.42591 -13.02535 -12.94356 -12.31147 -12.18091 -12.15683 -11.88499 -11.68429 -11.49626 -11.18236 -11.15477 -11.09573 -11.08235 -10.95731 -10.72962 -10.40181 -10.04341 -9.94500 -9.77264 -9.20879 -9.16685 -9.03227 -8.61639 -8.05408 -6.72943 -6.29833 -4.04051 1.12966 1.64187 2.93711 3.00639 3.19601 3.22052 3.25490 3.44567 3.93573 4.04562 4.12541 4.23994 4.30180 4.58858 4.64326 4.77382 4.89475 4.96065 5.03848 5.06228 5.07661 5.15243 5.21281 5.26563 5.37987 5.45934 5.49415 5.50966 5.56550 5.61218 5.72160 5.79915 5.84655 5.93465 5.95947 6.03440 6.22471 6.27942 6.55118 6.61191 6.90641 7.16124 7.37540 7.40836 7.47087 7.55810 8.21713 8.30935 9.15801 10.76879 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013035 B = 0.002760 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.612477 B =10142.251780 C =10942.143231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.155 4.155 4 C 0.107 3.893 5 H 0.108 0.892 6 O -0.533 6.533 7 C 0.115 3.885 8 H 0.107 0.893 9 C 0.068 3.932 10 O -0.552 6.552 11 N -0.719 5.719 12 C 0.567 3.433 13 O -0.535 6.535 14 C -0.155 4.155 15 C -0.089 4.089 16 C -0.141 4.141 17 C -0.055 4.055 18 C -0.106 4.106 19 S -0.035 6.035 20 C -0.521 4.521 21 H 0.075 0.925 22 C 0.074 3.926 23 N -0.870 5.870 24 Si 0.921 3.079 25 H -0.273 1.273 26 H -0.282 1.282 27 H -0.273 1.273 28 C -0.018 4.018 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.366 0.634 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.372 0.628 40 H 0.396 0.604 41 H 0.116 0.884 42 H 0.124 0.876 43 H 0.132 0.868 44 H 0.270 0.730 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.469 -23.700 -0.726 24.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.193 4.193 4 C 0.047 3.953 5 H 0.125 0.875 6 O -0.337 6.337 7 C 0.009 3.991 8 H 0.125 0.875 9 C -0.012 4.012 10 O -0.356 6.356 11 N -0.373 5.373 12 C 0.356 3.644 13 O -0.412 6.412 14 C -0.160 4.160 15 C -0.108 4.108 16 C -0.160 4.160 17 C -0.076 4.076 18 C -0.217 4.217 19 S 0.200 5.800 20 C -0.668 4.668 21 H 0.093 0.907 22 C -0.135 4.135 23 N -0.505 5.505 24 Si 0.747 3.253 25 H -0.198 1.198 26 H -0.207 1.207 27 H -0.198 1.198 28 C -0.040 4.040 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.213 0.787 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.218 0.782 40 H 0.232 0.768 41 H 0.133 0.867 42 H 0.142 0.858 43 H 0.149 0.851 44 H 0.080 0.920 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.028 -22.681 -1.548 23.520 hybrid contribution -1.659 -0.571 -0.269 1.775 sum 4.369 -23.252 -1.817 23.729 Atomic orbital electron populations 1.21792 0.95901 1.01545 1.01942 1.21440 0.95617 0.96102 1.02446 1.22371 0.95678 0.97881 1.03388 1.22142 0.92507 0.91361 0.89258 0.87453 1.86658 1.76828 1.55578 1.14661 1.21854 0.92766 0.92609 0.91835 0.87511 1.22488 0.94083 0.96339 0.88249 1.86586 1.25920 1.79455 1.43603 1.45747 1.68384 1.06997 1.16161 1.18420 0.76766 0.81488 0.87755 1.90770 1.50052 1.70989 1.29429 1.19833 1.07391 0.94609 0.94149 1.21113 0.98293 0.98688 0.92675 1.21059 1.02073 0.94313 0.98588 1.21970 0.94196 0.93899 0.97507 1.22857 1.00446 1.03628 0.94773 1.83613 1.24554 0.90291 1.81551 1.22793 0.99828 0.96426 1.47761 0.90684 1.25001 0.98775 0.94686 0.95080 1.69981 1.37222 0.98494 1.44848 0.86177 0.82158 0.77378 0.79611 1.19808 1.20713 1.19796 1.21947 0.91986 0.91392 0.98695 0.92795 0.92798 0.92708 0.92164 0.91334 0.91386 0.90885 0.78707 0.93168 0.93081 0.78207 0.76775 0.86656 0.85821 0.85054 0.91984 0.84359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.15 0.37 -0.74 16 2 C -0.12 -0.85 5.83 -26.74 -0.16 -1.01 16 3 C -0.16 -1.19 4.66 -26.73 -0.12 -1.31 16 4 C 0.11 0.84 2.78 -26.73 -0.07 0.77 16 5 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 6 O -0.53 -4.60 10.69 -57.93 -0.62 -5.22 16 7 C 0.11 1.11 2.30 -67.93 -0.16 0.95 16 8 H 0.11 1.15 7.58 -51.93 -0.39 0.75 16 9 C 0.07 0.64 6.85 37.16 0.25 0.89 16 10 O -0.55 -4.94 11.37 -57.93 -0.66 -5.60 16 11 N -0.72 -7.80 4.32 -54.74 -0.24 -8.04 16 12 C 0.57 8.75 7.74 -12.32 -0.10 8.65 16 13 O -0.54 -10.12 16.00 5.32 0.09 -10.03 16 14 C -0.15 -2.55 5.87 -104.99 -0.62 -3.16 16 15 C -0.09 -1.18 9.54 -39.12 -0.37 -1.55 16 16 C -0.14 -1.97 10.02 -39.68 -0.40 -2.37 16 17 C -0.05 -0.97 9.79 -39.25 -0.38 -1.35 16 18 C -0.11 -2.25 5.45 -38.99 -0.21 -2.47 16 19 S -0.03 -0.89 21.41 -107.50 -2.30 -3.19 16 20 C -0.52 -14.65 9.46 30.92 0.29 -14.36 16 21 H 0.07 2.09 7.79 -52.49 -0.41 1.68 16 22 C 0.07 2.06 5.49 -17.46 -0.10 1.97 16 23 N -0.87 -25.41 13.22 55.49 0.73 -24.68 16 24 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 28 C -0.02 -0.37 9.34 -38.92 -0.36 -0.74 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.52 7.82 -51.93 -0.41 0.11 16 34 H 0.07 0.54 7.61 -51.93 -0.40 0.14 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.37 2.53 7.51 45.56 0.34 2.87 16 37 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.37 2.09 9.12 45.56 0.42 2.51 16 40 H 0.40 3.43 4.98 -40.82 -0.20 3.22 16 41 H 0.12 1.07 6.40 -52.49 -0.34 0.73 16 42 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 43 H 0.13 2.21 8.06 -52.49 -0.42 1.79 16 44 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.14 3.02 7.65 -52.48 -0.40 2.62 16 LS Contribution 388.94 15.07 5.86 5.86 Total: -1.00 -33.64 388.94 -9.44 -43.08 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -5.15 Total: 7.26 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -2.13 Total: -15.81 kcal Atomic # 7 Polarization: -33.21 SS G_CDS: 0.50 Total: -32.71 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -1.19 Total: -20.85 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -0.89 SS G_CDS: -2.30 Total: -3.19 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.64 -9.44 -43.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412538500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.757 kcal (2) G-P(sol) polarization free energy of solvation -33.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds