Wall clock time and date at job start Sat Apr 11 2020 05:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47599 * 2 1 4 4 C 1.53000 * 109.47317 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47298 * 55.00109 * 4 3 2 6 6 O 1.42893 * 109.47152 * 294.99827 * 4 3 2 7 7 C 1.52997 * 109.46967 * 175.00055 * 4 3 2 8 8 H 1.09005 * 109.47479 * 300.00221 * 7 4 3 9 9 C 1.53000 * 109.47291 * 179.97438 * 7 4 3 10 10 O 1.42899 * 109.47251 * 305.00196 * 9 7 4 11 11 N 1.46503 * 109.47440 * 59.99725 * 7 4 3 12 12 C 1.34774 * 120.00214 * 204.99715 * 11 7 4 13 13 O 1.21549 * 119.99982 * 0.02562 * 12 11 7 14 14 C 1.47862 * 119.99902 * 179.97438 * 12 11 7 15 15 C 1.39678 * 120.10153 * 359.72848 * 14 12 11 16 16 C 1.38043 * 120.03609 * 179.74415 * 15 14 12 17 17 C 1.38169 * 120.24527 * 0.55375 * 16 15 14 18 18 C 1.39187 * 120.20496 * 359.70179 * 17 16 15 19 19 S 1.76200 * 120.02463 * 180.02562 * 18 17 16 20 20 C 1.76201 * 99.99658 * 265.52692 * 19 18 17 21 21 H 1.07997 * 120.00549 * 5.11450 * 20 19 18 22 22 C 1.38733 * 119.99984 * 185.12026 * 20 19 18 23 23 N 1.31628 * 119.99470 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00147 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47000 * 60.00166 * 24 22 20 26 26 H 1.48500 * 109.47053 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47290 * 300.00303 * 24 22 20 28 28 C 1.38874 * 119.95368 * 0.02562 * 18 17 16 29 29 H 1.09000 * 109.47590 * 59.99795 * 1 2 3 30 30 H 1.09001 * 109.47580 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46875 * 299.99753 * 1 2 3 32 32 H 1.09004 * 109.46875 * 240.00247 * 2 1 3 33 33 H 1.09000 * 109.47590 * 120.00205 * 2 1 3 34 34 H 1.09000 * 109.47021 * 59.99744 * 3 2 1 35 35 H 1.09000 * 109.47068 * 300.00188 * 3 2 1 36 36 H 0.96705 * 114.00230 * 300.00272 * 6 4 3 37 37 H 1.09004 * 109.46949 * 65.00122 * 9 7 4 38 38 H 1.09001 * 109.47638 * 184.99554 * 9 7 4 39 39 H 0.96696 * 114.00312 * 179.97438 * 10 9 7 40 40 H 0.96997 * 119.99326 * 25.00038 * 11 7 4 41 41 H 1.08000 * 119.97848 * 359.97438 * 15 14 12 42 42 H 1.08004 * 119.87247 * 180.27298 * 16 15 14 43 43 H 1.07998 * 119.90373 * 179.72164 * 17 16 15 44 44 H 0.97004 * 119.99700 * 180.02562 * 23 22 20 45 45 H 1.08003 * 120.12215 * 180.02562 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8531 -0.8427 6 8 4.0468 0.8728 1.2201 7 6 4.0800 2.8794 -0.1264 8 1 3.7163 3.3139 -1.0575 9 6 5.6100 2.8794 -0.1264 10 8 6.0864 2.2058 1.0404 11 7 3.5921 3.6715 1.0054 12 6 3.4635 5.0079 0.8869 13 8 3.7518 5.5558 -0.1591 14 6 2.9705 5.8072 2.0290 15 6 2.6322 5.1789 3.2297 16 6 2.1772 5.9271 4.2968 17 6 2.0434 7.2973 4.1794 18 6 2.3725 7.9332 2.9858 19 16 2.2006 9.6809 2.8415 20 6 0.5907 9.7723 2.1311 21 1 0.0060 8.8737 2.0010 22 6 0.0742 10.9987 1.7388 23 7 0.7867 12.0940 1.8978 24 14 -1.6321 11.0955 0.9851 25 1 -2.6315 10.5789 1.9545 26 1 -1.9480 12.5085 0.6550 27 1 -1.6738 10.2762 -0.2527 28 6 2.8364 7.1894 1.9088 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.7618 1.3472 2.0131 37 1 5.9733 2.3656 -1.0164 38 1 5.9734 3.9071 -0.1264 39 1 7.0503 2.1673 1.1063 40 1 3.3618 3.2341 1.8399 41 1 2.7303 4.1076 3.3245 42 1 1.9206 5.4391 5.2255 43 1 1.6826 7.8767 5.0163 44 1 0.4255 12.9515 1.6239 45 1 3.0930 7.6801 0.9815 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412538500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:10 Heat of formation + Delta-G solvation = -152.246303 kcal Electronic energy + Delta-G solvation = -26990.976841 eV Core-core repulsion = 23097.925280 eV Total energy + Delta-G solvation = -3893.051561 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.53646 -39.83722 -38.80713 -37.19585 -35.33427 -34.94595 -34.66251 -32.69231 -31.94183 -30.81242 -28.85200 -27.75238 -25.39281 -24.63910 -23.69068 -22.20595 -22.04270 -21.44297 -20.11254 -19.19539 -18.40893 -17.73148 -17.33686 -16.94191 -16.78993 -16.58843 -16.42124 -16.20965 -15.69233 -15.57179 -15.13850 -14.92090 -14.73883 -14.59849 -14.47433 -14.30195 -13.93196 -13.68121 -13.26622 -13.08836 -12.96860 -12.87195 -12.75198 -12.66705 -12.54645 -12.39997 -12.12034 -11.77523 -11.71123 -11.52099 -11.28382 -11.19458 -11.05012 -10.78248 -10.59670 -10.21654 -9.90774 -9.70864 -8.81796 -8.40101 -6.20404 -0.19514 0.24713 1.28589 1.38009 1.44207 1.62898 1.78079 1.96244 2.23819 2.79115 2.92954 3.28795 3.40689 3.43369 3.55323 3.70212 3.93186 3.95987 3.99693 4.07698 4.26405 4.29268 4.35073 4.42943 4.46816 4.49782 4.60456 4.61791 4.70310 4.79439 4.90344 4.91663 4.99245 5.03484 5.20339 5.24788 5.30177 5.32237 5.37115 5.40026 5.48505 5.49905 5.85247 6.14472 6.38482 6.84216 6.93208 7.00035 7.09526 8.66829 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013035 B = 0.002760 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.612477 B =10142.251780 C =10942.143231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.114 4.114 3 C -0.153 4.153 4 C 0.121 3.879 5 H 0.117 0.883 6 O -0.540 6.540 7 C 0.111 3.889 8 H 0.094 0.906 9 C 0.072 3.928 10 O -0.558 6.558 11 N -0.693 5.693 12 C 0.566 3.434 13 O -0.579 6.579 14 C -0.157 4.157 15 C -0.062 4.062 16 C -0.120 4.120 17 C -0.063 4.063 18 C -0.128 4.128 19 S -0.096 6.096 20 C -0.537 4.537 21 H 0.067 0.933 22 C 0.020 3.980 23 N -0.906 5.906 24 Si 0.991 3.009 25 H -0.260 1.260 26 H -0.271 1.271 27 H -0.270 1.270 28 C -0.045 4.045 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.375 0.625 37 H 0.069 0.931 38 H 0.025 0.975 39 H 0.387 0.613 40 H 0.411 0.589 41 H 0.172 0.828 42 H 0.176 0.824 43 H 0.135 0.865 44 H 0.274 0.726 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.607 -27.682 0.474 28.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.152 4.152 3 C -0.191 4.191 4 C 0.061 3.939 5 H 0.134 0.866 6 O -0.345 6.345 7 C 0.006 3.994 8 H 0.112 0.888 9 C -0.007 4.007 10 O -0.364 6.364 11 N -0.347 5.347 12 C 0.355 3.645 13 O -0.460 6.460 14 C -0.162 4.162 15 C -0.081 4.081 16 C -0.139 4.139 17 C -0.084 4.084 18 C -0.239 4.239 19 S 0.138 5.862 20 C -0.684 4.684 21 H 0.086 0.914 22 C -0.185 4.185 23 N -0.543 5.543 24 Si 0.813 3.187 25 H -0.185 1.185 26 H -0.196 1.196 27 H -0.195 1.195 28 C -0.067 4.067 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.223 0.777 37 H 0.087 0.913 38 H 0.043 0.957 39 H 0.236 0.764 40 H 0.250 0.750 41 H 0.189 0.811 42 H 0.193 0.807 43 H 0.152 0.848 44 H 0.083 0.917 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.187 -26.713 -0.309 27.214 hybrid contribution -1.278 0.465 -0.584 1.480 sum 3.909 -26.249 -0.893 26.553 Atomic orbital electron populations 1.21801 0.95971 1.01885 1.01629 1.21399 0.95505 0.95630 1.02634 1.22345 0.95394 0.98237 1.03093 1.22038 0.92510 0.89751 0.89580 0.86552 1.86659 1.76969 1.55779 1.15063 1.22017 0.93221 0.93422 0.90742 0.88799 1.22364 0.93667 0.95269 0.89397 1.86528 1.27562 1.79082 1.43245 1.45522 1.66644 1.05341 1.17196 1.18339 0.76627 0.82756 0.86818 1.90757 1.52137 1.72139 1.30971 1.19953 1.07142 0.93060 0.96031 1.21688 0.94701 1.01263 0.90432 1.21550 0.99522 0.92315 1.00558 1.22079 0.94314 0.95993 0.96007 1.22492 1.04117 1.00274 0.97057 1.83497 1.24461 0.96499 1.81709 1.23034 1.00809 0.96514 1.48058 0.91432 1.26010 1.03093 0.94114 0.95320 1.70106 1.39217 0.99087 1.45855 0.85107 0.76994 0.77868 0.78741 1.18459 1.19559 1.19525 1.21619 0.94314 0.93429 0.97310 0.93263 0.92185 0.92871 0.91849 0.91241 0.91278 0.91640 0.77732 0.91266 0.95678 0.76420 0.75049 0.81112 0.80690 0.84752 0.91678 0.88021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.91 71.98 0.71 -1.17 16 2 C -0.11 -1.33 5.83 30.59 0.18 -1.15 16 3 C -0.15 -1.93 4.66 30.59 0.14 -1.78 16 4 C 0.12 1.56 2.78 30.59 0.09 1.64 16 5 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 6 O -0.54 -7.24 10.69 -127.27 -1.36 -8.61 16 7 C 0.11 1.94 2.30 44.99 0.10 2.05 16 8 H 0.09 1.96 7.58 -2.38 -0.02 1.94 16 9 C 0.07 1.24 6.85 71.98 0.49 1.73 16 10 O -0.56 -8.40 11.37 -127.27 -1.45 -9.84 16 11 N -0.69 -13.39 4.32 -445.39 -1.93 -15.31 16 12 C 0.57 17.12 7.74 86.79 0.67 17.80 16 13 O -0.58 -22.74 16.00 -3.87 -0.06 -22.80 16 14 C -0.16 -5.00 5.87 -20.11 -0.12 -5.12 16 15 C -0.06 -1.39 9.54 22.57 0.22 -1.17 16 16 C -0.12 -2.84 10.02 22.21 0.22 -2.62 16 17 C -0.06 -2.17 9.79 22.48 0.22 -1.95 16 18 C -0.13 -5.64 5.45 22.65 0.12 -5.52 16 19 S -0.10 -5.29 21.41 -56.49 -1.21 -6.50 16 20 C -0.54 -31.61 9.46 67.94 0.64 -30.97 16 21 H 0.07 3.92 7.79 -2.91 -0.02 3.90 16 22 C 0.02 1.15 5.49 84.84 0.47 1.61 16 23 N -0.91 -54.90 13.22 21.64 0.29 -54.62 16 24 Si 0.99 44.63 29.55 68.60 2.03 46.66 16 25 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 27 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 28 C -0.04 -1.89 9.34 22.70 0.21 -1.68 16 29 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.07 0.82 7.82 -2.39 -0.02 0.80 16 34 H 0.07 0.85 7.61 -2.39 -0.02 0.83 16 35 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.37 3.45 7.51 -74.05 -0.56 2.89 16 37 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.02 0.56 8.14 -2.39 -0.02 0.55 16 39 H 0.39 3.32 9.12 -74.06 -0.68 2.65 16 40 H 0.41 5.31 4.98 -92.71 -0.46 4.85 16 41 H 0.17 1.94 6.40 -2.91 -0.02 1.92 16 42 H 0.18 2.49 8.06 -2.91 -0.02 2.47 16 43 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 44 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 45 H 0.10 4.93 7.65 -2.91 -0.02 4.90 16 Total: -1.00 -79.34 388.94 0.02 -79.32 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: -0.66 Total: 19.99 kcal Atomic # 6 Polarization: -32.67 SS G_CDS: 4.37 Total: -28.29 kcal Atomic # 7 Polarization: -68.29 SS G_CDS: -1.64 Total: -69.93 kcal Atomic # 8 Polarization: -38.38 SS G_CDS: -2.87 Total: -41.25 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 16 Polarization: -5.29 SS G_CDS: -1.21 Total: -6.50 kcal Total: -79.34 0.02 -79.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412538500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.925 kcal (2) G-P(sol) polarization free energy of solvation -79.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds