Wall clock time and date at job start Sat Apr 11 2020 05:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47016 * 2 1 4 4 C 1.53003 * 109.47387 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46960 * 305.00348 * 4 3 2 6 6 O 1.42898 * 109.46766 * 64.99992 * 4 3 2 7 7 C 1.52997 * 109.47411 * 184.99827 * 4 3 2 8 8 H 1.08996 * 109.47150 * 301.94893 * 7 4 3 9 9 C 1.53001 * 109.47180 * 181.94622 * 7 4 3 10 10 O 1.42895 * 109.47348 * 304.42375 * 9 7 4 11 11 N 1.46503 * 109.46775 * 61.95096 * 7 4 3 12 12 C 1.34779 * 119.99899 * 204.99956 * 11 7 4 13 13 O 1.21553 * 119.99738 * 359.97438 * 12 11 7 14 14 C 1.47861 * 119.99934 * 180.02562 * 12 11 7 15 15 C 1.39671 * 120.10072 * 0.02562 * 14 12 11 16 16 C 1.38042 * 120.03468 * 179.97438 * 15 14 12 17 17 C 1.38179 * 120.24617 * 359.74394 * 16 15 14 18 18 C 1.39178 * 120.19832 * 0.51395 * 17 16 15 19 19 S 1.76202 * 120.01835 * 179.76740 * 18 17 16 20 20 C 1.76198 * 100.00110 * 264.91453 * 19 18 17 21 21 H 1.08005 * 119.99633 * 5.03826 * 20 19 18 22 22 C 1.38731 * 120.00186 * 185.04393 * 20 19 18 23 23 N 1.31621 * 119.99680 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00016 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47104 * 89.99889 * 24 22 20 26 26 H 1.48497 * 109.47250 * 209.99757 * 24 22 20 27 27 H 1.48499 * 109.46985 * 330.00270 * 24 22 20 28 28 C 1.38871 * 119.96106 * 359.48359 * 18 17 16 29 29 H 1.09000 * 109.47251 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47571 * 299.99709 * 1 2 3 31 31 H 1.09000 * 109.47399 * 60.00292 * 1 2 3 32 32 H 1.08997 * 109.47520 * 239.99922 * 2 1 3 33 33 H 1.09000 * 109.47399 * 119.99708 * 2 1 3 34 34 H 1.08997 * 109.47227 * 60.00149 * 3 2 1 35 35 H 1.08997 * 109.47525 * 300.00015 * 3 2 1 36 36 H 0.96699 * 114.00079 * 64.81399 * 6 4 3 37 37 H 1.09003 * 109.46513 * 64.42450 * 9 7 4 38 38 H 1.08998 * 109.47158 * 184.42281 * 9 7 4 39 39 H 0.96695 * 114.00340 * 179.97438 * 10 9 7 40 40 H 0.97002 * 120.00019 * 24.99817 * 11 7 4 41 41 H 1.08000 * 119.98452 * 359.95886 * 15 14 12 42 42 H 1.07999 * 119.87497 * 180.02562 * 16 15 14 43 43 H 1.08000 * 119.89753 * 180.25798 * 17 16 15 44 44 H 0.97002 * 119.99520 * 179.97438 * 23 22 20 45 45 H 1.07997 * 120.12102 * 180.27351 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9329 0.8532 0.8427 6 8 4.0467 0.8731 -1.2201 7 6 4.0799 2.8796 0.1263 8 1 3.6886 3.4773 -0.6969 9 6 5.6091 2.8842 0.0782 10 8 6.1203 2.0186 1.0937 11 7 3.6297 3.4478 1.3994 12 6 3.5011 4.7828 1.5336 13 8 3.7591 5.5152 0.5984 14 6 3.0474 5.3563 2.8187 15 6 2.7519 4.5167 3.8950 16 6 2.3289 5.0537 5.0943 17 6 2.2008 6.4220 5.2376 18 6 2.4874 7.2676 4.1700 19 16 2.3166 9.0114 4.3561 20 6 0.6886 9.2292 3.7184 21 1 0.0986 8.3689 3.4389 22 6 0.1647 10.5058 3.5754 23 7 -1.0513 10.6684 3.0985 24 14 1.1849 11.9938 4.0594 25 1 1.9736 12.4553 2.8888 26 1 0.2851 13.0853 4.5112 27 1 2.1072 11.6238 5.1629 28 6 2.9137 6.7365 2.9597 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 3.8237 1.3878 -2.0078 37 1 5.9428 2.5348 -0.8989 38 1 5.9749 3.8971 0.2462 39 1 7.0857 1.9720 1.1216 40 1 3.4242 2.8633 2.1458 41 1 2.8542 3.4468 3.7889 42 1 2.1015 4.4021 5.9251 43 1 1.8734 6.8363 6.1797 44 1 -1.4178 11.5610 2.9988 45 1 3.1411 7.3906 2.1309 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412538506.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:18 Heat of formation + Delta-G solvation = -129.681573 kcal Electronic energy + Delta-G solvation = -26813.535248 eV Core-core repulsion = 22921.462167 eV Total energy + Delta-G solvation = -3892.073081 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.40979 -38.89395 -37.72193 -36.68180 -34.71525 -34.32444 -32.51501 -31.51663 -30.67158 -29.65031 -28.30203 -25.69579 -24.51457 -23.64629 -22.45983 -21.50871 -21.27135 -20.50305 -18.60326 -17.72907 -17.49281 -16.71720 -16.54176 -15.90973 -15.78877 -15.36424 -15.16695 -14.96405 -14.58760 -14.48314 -14.27849 -13.88882 -13.80837 -13.59818 -13.46774 -13.05627 -12.91133 -12.45130 -12.24732 -12.20181 -11.97983 -11.93469 -11.54869 -11.37313 -11.22640 -11.11527 -11.05524 -10.93882 -10.64981 -10.35810 -10.27191 -9.95968 -9.83361 -9.25072 -9.18887 -9.09644 -8.67209 -8.17851 -7.15210 -6.34465 -4.10023 1.07310 1.57125 2.81216 2.95509 3.00221 3.25876 3.37319 3.48572 3.95415 3.97151 4.06882 4.24807 4.26293 4.53247 4.66972 4.74785 4.87935 4.88630 4.93016 5.01432 5.03407 5.05086 5.15221 5.21045 5.28393 5.33242 5.45091 5.54638 5.58011 5.63137 5.71971 5.76544 5.82761 5.89050 5.96880 6.06179 6.16056 6.27726 6.48840 6.55258 6.80591 7.08395 7.23863 7.34205 7.40933 7.89717 8.19695 8.42925 9.09435 10.74974 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014593 B = 0.002607 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.264025 B =10738.974045 C =11207.852070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C -0.155 4.155 4 C 0.108 3.892 5 H 0.111 0.889 6 O -0.550 6.550 7 C 0.118 3.882 8 H 0.102 0.898 9 C 0.068 3.932 10 O -0.568 6.568 11 N -0.715 5.715 12 C 0.567 3.433 13 O -0.536 6.536 14 C -0.153 4.153 15 C -0.084 4.084 16 C -0.139 4.139 17 C -0.051 4.051 18 C -0.085 4.085 19 S -0.112 6.112 20 C -0.509 4.509 21 H 0.091 0.909 22 C 0.095 3.905 23 N -0.876 5.876 24 Si 0.858 3.142 25 H -0.265 1.265 26 H -0.273 1.273 27 H -0.239 1.239 28 C -0.016 4.016 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.373 0.627 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.379 0.621 40 H 0.402 0.598 41 H 0.119 0.881 42 H 0.126 0.874 43 H 0.133 0.867 44 H 0.272 0.728 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.073 -21.458 -3.900 24.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.193 4.193 4 C 0.048 3.952 5 H 0.128 0.872 6 O -0.354 6.354 7 C 0.012 3.988 8 H 0.120 0.880 9 C -0.011 4.011 10 O -0.373 6.373 11 N -0.370 5.370 12 C 0.356 3.644 13 O -0.413 6.413 14 C -0.158 4.158 15 C -0.103 4.103 16 C -0.159 4.159 17 C -0.072 4.072 18 C -0.196 4.196 19 S 0.122 5.878 20 C -0.656 4.656 21 H 0.109 0.891 22 C -0.114 4.114 23 N -0.512 5.512 24 Si 0.682 3.318 25 H -0.190 1.190 26 H -0.198 1.198 27 H -0.163 1.163 28 C -0.038 4.038 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.220 0.780 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.226 0.774 40 H 0.238 0.762 41 H 0.137 0.863 42 H 0.144 0.856 43 H 0.151 0.849 44 H 0.082 0.918 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 10.410 -20.504 -3.711 23.293 hybrid contribution -0.437 0.154 -0.531 0.704 sum 9.973 -20.349 -4.241 23.055 Atomic orbital electron populations 1.21795 0.95854 1.01563 1.01985 1.21433 0.95634 0.96066 1.02435 1.22374 0.95494 0.97988 1.03438 1.22058 0.92554 0.92049 0.88518 0.87153 1.86635 1.80456 1.52516 1.15827 1.21776 0.93076 0.95538 0.88401 0.88029 1.22526 0.93960 0.93577 0.91079 1.86404 1.26148 1.68140 1.56644 1.45690 1.69472 1.07005 1.14792 1.18391 0.76547 0.81610 0.87899 1.90771 1.50205 1.59499 1.40851 1.19793 1.07692 0.94627 0.93659 1.21181 0.97751 0.98491 0.92898 1.21052 1.02071 0.95267 0.97495 1.21903 0.93833 0.92690 0.98765 1.22188 1.01596 1.00829 0.94972 1.83074 1.24437 0.97168 1.83149 1.22240 0.96423 0.97333 1.49609 0.89102 1.24742 0.94796 0.98399 0.93440 1.69926 1.14927 1.23579 1.42745 0.86734 0.81138 0.82901 0.80999 1.19032 1.19782 1.16324 1.21887 0.91685 0.93154 0.97075 0.92788 0.92655 0.92787 0.91429 0.92099 0.90661 0.91427 0.77953 0.92407 0.92926 0.77442 0.76203 0.86317 0.85588 0.84893 0.91798 0.84216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.15 0.37 -0.79 16 2 C -0.12 -0.89 5.83 -26.73 -0.16 -1.04 16 3 C -0.16 -1.23 4.85 -26.73 -0.13 -1.36 16 4 C 0.11 0.87 2.38 -26.73 -0.06 0.81 16 5 H 0.11 0.98 7.64 -51.93 -0.40 0.59 16 6 O -0.55 -4.34 12.21 -35.23 -0.43 -4.77 16 7 C 0.12 1.14 2.09 -67.93 -0.14 1.00 16 8 H 0.10 1.07 7.58 -51.93 -0.39 0.68 16 9 C 0.07 0.63 6.61 37.16 0.25 0.88 16 10 O -0.57 -5.06 12.78 -35.23 -0.45 -5.51 16 11 N -0.72 -7.94 4.23 -54.74 -0.23 -8.17 16 12 C 0.57 8.72 7.74 -12.32 -0.10 8.62 16 13 O -0.54 -10.04 16.01 5.32 0.09 -9.95 16 14 C -0.15 -2.49 5.87 -105.00 -0.62 -3.10 16 15 C -0.08 -1.11 9.54 -39.12 -0.37 -1.49 16 16 C -0.14 -1.92 10.02 -39.67 -0.40 -2.32 16 17 C -0.05 -0.88 9.79 -39.25 -0.38 -1.26 16 18 C -0.09 -1.76 5.45 -39.00 -0.21 -1.97 16 19 S -0.11 -2.71 19.38 -107.50 -2.08 -4.79 16 20 C -0.51 -14.55 10.01 30.91 0.31 -14.24 16 21 H 0.09 2.82 8.02 -52.48 -0.42 2.40 16 22 C 0.10 2.73 5.50 -17.46 -0.10 2.64 16 23 N -0.88 -26.22 13.97 55.49 0.78 -25.44 16 24 Si 0.86 20.95 27.74 -169.99 -4.71 16.24 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.24 -5.65 6.74 56.52 0.38 -5.27 16 28 C -0.02 -0.32 9.34 -38.92 -0.36 -0.69 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.52 7.82 -51.93 -0.41 0.12 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.64 7.44 -51.93 -0.39 0.26 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.37 1.79 9.03 45.56 0.41 2.20 16 37 H 0.06 0.46 7.77 -51.93 -0.40 0.06 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.38 1.96 9.12 45.56 0.42 2.38 16 40 H 0.40 3.70 6.53 -40.82 -0.27 3.43 16 41 H 0.12 1.12 6.40 -52.49 -0.34 0.78 16 42 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 43 H 0.13 2.16 8.06 -52.49 -0.42 1.74 16 44 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.14 2.97 7.65 -52.49 -0.40 2.57 16 LS Contribution 390.46 15.07 5.88 5.88 Total: -1.00 -34.26 390.46 -8.39 -42.66 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -5.12 Total: 8.17 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: -2.11 Total: -14.31 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: 0.54 Total: -33.62 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.80 Total: -20.23 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.71 Total: 16.24 kcal Atomic # 16 Polarization: -2.71 SS G_CDS: -2.08 Total: -4.79 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.26 -8.39 -42.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412538506.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.025 kcal (2) G-P(sol) polarization free energy of solvation -34.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds