Wall clock time and date at job start Sat Apr 11 2020 05:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47016 * 2 1 4 4 C 1.53003 * 109.47387 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.46960 * 305.00348 * 4 3 2 6 6 O 1.42898 * 109.46766 * 64.99992 * 4 3 2 7 7 C 1.52997 * 109.47411 * 184.99827 * 4 3 2 8 8 H 1.08996 * 109.47150 * 301.94893 * 7 4 3 9 9 C 1.53001 * 109.47180 * 181.94622 * 7 4 3 10 10 O 1.42895 * 109.47348 * 304.42375 * 9 7 4 11 11 N 1.46503 * 109.46775 * 61.95096 * 7 4 3 12 12 C 1.34779 * 119.99899 * 204.99956 * 11 7 4 13 13 O 1.21553 * 119.99738 * 359.97438 * 12 11 7 14 14 C 1.47861 * 119.99934 * 180.02562 * 12 11 7 15 15 C 1.39671 * 120.10072 * 0.02562 * 14 12 11 16 16 C 1.38042 * 120.03468 * 179.97438 * 15 14 12 17 17 C 1.38179 * 120.24617 * 359.74394 * 16 15 14 18 18 C 1.39178 * 120.19832 * 0.51395 * 17 16 15 19 19 S 1.76202 * 120.01835 * 179.76740 * 18 17 16 20 20 C 1.76198 * 100.00110 * 264.91453 * 19 18 17 21 21 H 1.08005 * 119.99633 * 5.03826 * 20 19 18 22 22 C 1.38731 * 120.00186 * 185.04393 * 20 19 18 23 23 N 1.31621 * 119.99680 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00016 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47104 * 89.99889 * 24 22 20 26 26 H 1.48497 * 109.47250 * 209.99757 * 24 22 20 27 27 H 1.48499 * 109.46985 * 330.00270 * 24 22 20 28 28 C 1.38871 * 119.96106 * 359.48359 * 18 17 16 29 29 H 1.09000 * 109.47251 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47571 * 299.99709 * 1 2 3 31 31 H 1.09000 * 109.47399 * 60.00292 * 1 2 3 32 32 H 1.08997 * 109.47520 * 239.99922 * 2 1 3 33 33 H 1.09000 * 109.47399 * 119.99708 * 2 1 3 34 34 H 1.08997 * 109.47227 * 60.00149 * 3 2 1 35 35 H 1.08997 * 109.47525 * 300.00015 * 3 2 1 36 36 H 0.96699 * 114.00079 * 64.81399 * 6 4 3 37 37 H 1.09003 * 109.46513 * 64.42450 * 9 7 4 38 38 H 1.08998 * 109.47158 * 184.42281 * 9 7 4 39 39 H 0.96695 * 114.00340 * 179.97438 * 10 9 7 40 40 H 0.97002 * 120.00019 * 24.99817 * 11 7 4 41 41 H 1.08000 * 119.98452 * 359.95886 * 15 14 12 42 42 H 1.07999 * 119.87497 * 180.02562 * 16 15 14 43 43 H 1.08000 * 119.89753 * 180.25798 * 17 16 15 44 44 H 0.97002 * 119.99520 * 179.97438 * 23 22 20 45 45 H 1.07997 * 120.12102 * 180.27351 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9329 0.8532 0.8427 6 8 4.0467 0.8731 -1.2201 7 6 4.0799 2.8796 0.1263 8 1 3.6886 3.4773 -0.6969 9 6 5.6091 2.8842 0.0782 10 8 6.1203 2.0186 1.0937 11 7 3.6297 3.4478 1.3994 12 6 3.5011 4.7828 1.5336 13 8 3.7591 5.5152 0.5984 14 6 3.0474 5.3563 2.8187 15 6 2.7519 4.5167 3.8950 16 6 2.3289 5.0537 5.0943 17 6 2.2008 6.4220 5.2376 18 6 2.4874 7.2676 4.1700 19 16 2.3166 9.0114 4.3561 20 6 0.6886 9.2292 3.7184 21 1 0.0986 8.3689 3.4389 22 6 0.1647 10.5058 3.5754 23 7 -1.0513 10.6684 3.0985 24 14 1.1849 11.9938 4.0594 25 1 1.9736 12.4553 2.8888 26 1 0.2851 13.0853 4.5112 27 1 2.1072 11.6238 5.1629 28 6 2.9137 6.7365 2.9597 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 3.8237 1.3878 -2.0078 37 1 5.9428 2.5348 -0.8989 38 1 5.9749 3.8971 0.2462 39 1 7.0857 1.9720 1.1216 40 1 3.4242 2.8633 2.1458 41 1 2.8542 3.4468 3.7889 42 1 2.1015 4.4021 5.9251 43 1 1.8734 6.8363 6.1797 44 1 -1.4178 11.5610 2.9988 45 1 3.1411 7.3906 2.1309 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412538506.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:17 Heat of formation + Delta-G solvation = -156.821520 kcal Electronic energy + Delta-G solvation = -26814.712124 eV Core-core repulsion = 22921.462167 eV Total energy + Delta-G solvation = -3893.249957 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.51088 -39.86466 -38.87625 -37.37195 -35.64540 -34.99572 -34.72727 -32.69362 -31.99175 -30.58934 -29.00433 -27.92907 -25.44514 -24.63229 -23.76340 -22.21018 -22.09491 -21.63580 -20.14238 -19.15703 -18.49453 -17.65694 -17.43476 -17.15338 -16.91759 -16.63706 -16.54928 -16.23201 -15.77167 -15.55292 -15.11091 -14.99610 -14.89340 -14.72016 -14.59036 -14.31573 -13.98625 -13.78336 -13.59461 -13.14003 -13.08084 -12.98365 -12.82162 -12.69950 -12.59320 -12.30009 -12.17644 -11.86456 -11.70355 -11.54160 -11.30882 -11.22737 -11.06436 -11.00174 -10.81407 -10.23920 -9.93367 -9.76236 -9.15429 -8.54765 -6.28970 -0.23163 0.19379 1.05473 1.30551 1.43172 1.63303 1.74618 1.94227 2.20815 2.58174 2.83468 2.95249 3.27272 3.33305 3.58569 3.68315 3.82957 3.90011 3.98819 4.04453 4.21365 4.26968 4.31007 4.35291 4.42062 4.49884 4.58786 4.59917 4.68227 4.75579 4.88220 4.92743 4.98408 5.03965 5.17197 5.23925 5.27966 5.30059 5.40912 5.42245 5.47704 5.67904 5.80965 6.09158 6.39102 6.75688 6.83238 6.87714 7.07257 8.58863 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014593 B = 0.002607 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.264025 B =10738.974045 C =11207.852070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.114 4.114 3 C -0.153 4.153 4 C 0.125 3.875 5 H 0.111 0.889 6 O -0.557 6.557 7 C 0.114 3.886 8 H 0.091 0.909 9 C 0.073 3.927 10 O -0.576 6.576 11 N -0.692 5.692 12 C 0.566 3.434 13 O -0.579 6.579 14 C -0.158 4.158 15 C -0.060 4.060 16 C -0.121 4.121 17 C -0.058 4.058 18 C -0.119 4.119 19 S -0.115 6.115 20 C -0.524 4.524 21 H 0.046 0.954 22 C 0.041 3.959 23 N -0.919 5.919 24 Si 0.922 3.078 25 H -0.262 1.262 26 H -0.257 1.257 27 H -0.226 1.226 28 C -0.042 4.042 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.387 0.613 37 H 0.074 0.926 38 H 0.029 0.971 39 H 0.395 0.605 40 H 0.415 0.585 41 H 0.171 0.829 42 H 0.177 0.823 43 H 0.141 0.859 44 H 0.278 0.722 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.371 -24.347 -2.555 26.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.151 4.151 3 C -0.191 4.191 4 C 0.065 3.935 5 H 0.129 0.871 6 O -0.363 6.363 7 C 0.009 3.991 8 H 0.109 0.891 9 C -0.006 4.006 10 O -0.383 6.383 11 N -0.346 5.346 12 C 0.354 3.646 13 O -0.459 6.459 14 C -0.163 4.163 15 C -0.078 4.078 16 C -0.141 4.141 17 C -0.079 4.079 18 C -0.230 4.230 19 S 0.119 5.881 20 C -0.671 4.671 21 H 0.064 0.936 22 C -0.164 4.164 23 N -0.557 5.557 24 Si 0.742 3.258 25 H -0.187 1.187 26 H -0.181 1.181 27 H -0.150 1.150 28 C -0.064 4.064 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.236 0.764 37 H 0.092 0.908 38 H 0.048 0.952 39 H 0.245 0.755 40 H 0.253 0.747 41 H 0.188 0.812 42 H 0.194 0.806 43 H 0.158 0.842 44 H 0.087 0.913 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 11.723 -23.450 -2.358 26.322 hybrid contribution -0.815 0.769 -1.004 1.505 sum 10.908 -22.680 -3.361 25.390 Atomic orbital electron populations 1.21804 0.95938 1.01930 1.01623 1.21393 0.95506 0.95615 1.02622 1.22358 0.95350 0.98302 1.03103 1.21855 0.92382 0.90447 0.88825 0.87150 1.86609 1.80536 1.52856 1.16315 1.21939 0.93620 0.96379 0.87181 0.89095 1.22385 0.93441 0.92620 0.92119 1.86351 1.27905 1.67670 1.56411 1.45499 1.67759 1.05498 1.15854 1.18327 0.76411 0.82724 0.87088 1.90755 1.52283 1.60827 1.42066 1.19930 1.07574 0.93478 0.95296 1.21733 0.94301 1.00563 0.91202 1.21560 0.99544 0.93964 0.98989 1.22090 0.93654 0.94231 0.97927 1.22066 1.05297 0.98657 0.96941 1.82622 1.20997 1.01777 1.82730 1.22371 0.98889 0.96184 1.49625 0.93610 1.25724 0.95948 1.01489 0.93245 1.70032 1.16748 1.24740 1.44162 0.85774 0.79836 0.79051 0.81112 1.18717 1.18140 1.14971 1.21637 0.93827 0.94827 0.96080 0.92096 0.92967 0.93213 0.91581 0.91531 0.91029 0.91814 0.76361 0.90772 0.95219 0.75502 0.74660 0.81195 0.80579 0.84164 0.91255 0.87476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.91 71.98 0.71 -1.34 16 2 C -0.11 -1.45 5.83 30.59 0.18 -1.27 16 3 C -0.15 -2.10 4.85 30.59 0.15 -1.95 16 4 C 0.12 1.71 2.38 30.59 0.07 1.79 16 5 H 0.11 1.59 7.64 -2.39 -0.02 1.57 16 6 O -0.56 -7.42 12.21 -148.98 -1.82 -9.24 16 7 C 0.11 2.03 2.09 44.99 0.09 2.12 16 8 H 0.09 1.86 7.58 -2.39 -0.02 1.85 16 9 C 0.07 1.26 6.61 71.98 0.48 1.73 16 10 O -0.58 -8.70 12.78 -148.98 -1.90 -10.60 16 11 N -0.69 -13.96 4.23 -445.39 -1.89 -15.85 16 12 C 0.57 17.18 7.74 86.79 0.67 17.85 16 13 O -0.58 -22.47 16.01 -3.88 -0.06 -22.54 16 14 C -0.16 -5.01 5.87 -20.11 -0.12 -5.13 16 15 C -0.06 -1.34 9.54 22.57 0.22 -1.13 16 16 C -0.12 -2.84 10.02 22.21 0.22 -2.62 16 17 C -0.06 -1.93 9.79 22.48 0.22 -1.71 16 18 C -0.12 -5.02 5.45 22.65 0.12 -4.90 16 19 S -0.12 -5.74 19.38 -56.49 -1.09 -6.83 16 20 C -0.52 -31.50 10.01 67.94 0.68 -30.82 16 21 H 0.05 3.05 8.02 -2.91 -0.02 3.03 16 22 C 0.04 2.44 5.50 84.84 0.47 2.90 16 23 N -0.92 -57.14 13.97 21.64 0.30 -56.84 16 24 Si 0.92 44.09 27.74 68.60 1.90 46.00 16 25 H -0.26 -12.34 7.11 99.48 0.71 -11.63 16 26 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 27 H -0.23 -10.27 6.74 99.48 0.67 -9.60 16 28 C -0.04 -1.72 9.34 22.70 0.21 -1.51 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 0.88 7.82 -2.39 -0.02 0.86 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.07 1.04 7.44 -2.39 -0.02 1.02 16 35 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.39 2.90 9.03 -74.06 -0.67 2.23 16 37 H 0.07 1.03 7.77 -2.39 -0.02 1.02 16 38 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.40 3.07 9.12 -74.06 -0.68 2.39 16 40 H 0.41 6.04 6.53 -92.71 -0.61 5.43 16 41 H 0.17 2.11 6.40 -2.91 -0.02 2.09 16 42 H 0.18 2.48 8.06 -2.91 -0.02 2.46 16 43 H 0.14 4.37 8.06 -2.91 -0.02 4.34 16 44 H 0.28 15.86 8.31 -92.71 -0.77 15.09 16 45 H 0.11 4.99 7.65 -2.91 -0.02 4.97 16 Total: -1.00 -80.09 390.46 -1.14 -81.23 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: -0.95 Total: 20.65 kcal Atomic # 6 Polarization: -30.36 SS G_CDS: 4.38 Total: -25.98 kcal Atomic # 7 Polarization: -71.10 SS G_CDS: -1.58 Total: -72.69 kcal Atomic # 8 Polarization: -38.59 SS G_CDS: -3.79 Total: -42.38 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.90 Total: 46.00 kcal Atomic # 16 Polarization: -5.74 SS G_CDS: -1.09 Total: -6.83 kcal Total: -80.09 -1.14 -81.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412538506.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.587 kcal (2) G-P(sol) polarization free energy of solvation -80.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds