Wall clock time and date at job start Sat Apr 11 2020 05:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46830 * 2 1 4 4 C 1.52996 * 109.47102 * 239.99942 * 2 1 3 5 5 C 1.50696 * 109.47630 * 59.99683 * 4 2 1 6 6 H 1.08000 * 119.99705 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00635 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99578 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00324 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47040 * 60.00280 * 9 7 5 11 11 H 1.48506 * 109.46870 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47195 * 300.00102 * 9 7 5 13 13 C 1.53001 * 109.47024 * 119.99893 * 2 1 3 14 14 N 1.46506 * 109.46867 * 300.00115 * 13 2 1 15 15 S 1.65597 * 119.99791 * 165.00419 * 14 13 2 16 16 O 1.42102 * 106.40060 * 178.54054 * 15 14 13 17 17 O 1.42101 * 106.40207 * 311.45359 * 15 14 13 18 18 C 1.76196 * 107.22133 * 64.99502 * 15 14 13 19 19 C 1.37978 * 119.87827 * 114.72663 * 18 15 14 20 20 C 1.38241 * 120.34988 * 179.81887 * 19 18 15 21 21 C 1.38395 * 119.77019 * 0.39748 * 20 19 18 22 22 C 1.37697 * 119.97204 * 359.67833 * 21 20 19 23 23 C 1.38928 * 120.79004 * 0.30944 * 22 21 20 24 24 O 1.36136 * 111.22655 * 179.28854 * 23 22 21 25 25 C 1.43763 * 109.26640 * 18.86240 * 24 23 22 26 26 C 1.51648 * 132.17579 * 180.54327 * 22 21 20 27 27 H 1.09002 * 109.47250 * 300.00319 * 1 2 3 28 28 H 1.08996 * 109.47311 * 60.00247 * 1 2 3 29 29 H 1.09002 * 109.47430 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46665 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.47348 * 299.99280 * 3 2 1 32 32 H 1.08992 * 109.47468 * 59.99805 * 3 2 1 33 33 H 1.09002 * 109.47313 * 180.02562 * 4 2 1 34 34 H 1.09008 * 109.46851 * 299.99881 * 4 2 1 35 35 H 0.97005 * 120.00103 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.47232 * 180.02562 * 13 2 1 37 37 H 1.09002 * 109.46985 * 59.99766 * 13 2 1 38 38 H 0.96995 * 120.00050 * 344.72503 * 14 13 2 39 39 H 1.08000 * 119.82516 * 0.07517 * 19 18 15 40 40 H 1.08000 * 120.11496 * 180.12370 * 20 19 18 41 41 H 1.07998 * 120.01222 * 179.70005 * 21 20 19 42 42 H 1.08998 * 110.75222 * 90.64684 * 25 24 23 43 43 H 1.09002 * 110.74928 * 213.81644 * 25 24 23 44 44 H 1.09006 * 110.93372 * 46.12932 * 26 22 21 45 45 H 1.08994 * 110.97298 * 282.45731 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 1 0.9171 0.8673 -2.3807 7 6 1.8711 -0.4817 -3.7319 8 7 2.6273 -1.5510 -3.8525 9 14 1.2490 0.3991 -5.2572 10 1 1.7441 1.7992 -5.2567 11 1 1.7440 -0.3011 -6.4696 12 1 -0.2360 0.3992 -5.2577 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4454 15 16 1.6256 -0.7780 3.9213 16 8 1.1154 0.1512 4.8676 17 8 1.0838 -2.0790 3.7398 18 6 3.3300 -0.9985 4.3094 19 6 3.8821 -0.3319 5.3840 20 6 5.2174 -0.5007 5.6996 21 6 6.0055 -1.3365 4.9279 22 6 5.4569 -2.0015 3.8542 23 6 4.1163 -1.8403 3.5273 24 8 3.7856 -2.5721 2.4280 25 6 4.7750 -3.5949 2.2238 26 6 6.0458 -2.9720 2.8486 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9563 0.8899 33 1 3.1300 -0.7217 -1.2490 34 1 1.6766 -1.7490 -1.2491 35 1 2.8617 -1.8825 -4.7335 36 1 3.1300 -0.7209 1.2495 37 1 1.6766 -1.7489 1.2493 38 1 1.1886 0.8661 2.3735 39 1 3.2668 0.3219 5.9842 40 1 5.6451 0.0214 6.5427 41 1 7.0503 -1.4675 5.1680 42 1 4.4972 -4.5106 2.7457 43 1 4.9184 -3.7866 1.1604 44 1 6.6475 -3.7320 3.3471 45 1 6.6323 -2.4455 2.0957 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420727905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:29 Heat of formation + Delta-G solvation = -90.922438 kcal Electronic energy + Delta-G solvation = -28637.339153 eV Core-core repulsion = 24746.946795 eV Total energy + Delta-G solvation = -3890.392359 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.37516 -37.82771 -37.57248 -36.92290 -35.67551 -33.51734 -33.07018 -31.85409 -30.50827 -29.49268 -26.99461 -26.40912 -25.74174 -23.98908 -22.87093 -22.69302 -22.26410 -19.23393 -18.45369 -17.98050 -17.44309 -16.92220 -16.70367 -16.30507 -16.15314 -15.60612 -15.24756 -14.54696 -14.31157 -14.04913 -13.93156 -13.62681 -13.33744 -13.26922 -12.98241 -12.74345 -12.49288 -12.33784 -12.09156 -12.03996 -11.94194 -11.87942 -11.76017 -11.72228 -11.17543 -11.11818 -10.95554 -10.83206 -10.66460 -10.56531 -10.32348 -10.21272 -9.84052 -9.55970 -9.17478 -9.07575 -8.85554 -8.47784 -8.33329 -5.98454 -3.98622 0.47568 0.71865 1.02847 2.92535 3.07709 3.33518 3.35704 3.38304 3.40761 3.82039 4.10733 4.26950 4.46127 4.48862 4.70007 4.79904 4.84146 5.02668 5.11704 5.32433 5.37573 5.43681 5.45575 5.52342 5.63709 5.69173 5.76002 5.84318 5.89500 5.96894 6.05492 6.24576 6.26034 6.36949 6.43488 6.48767 6.72512 6.76772 6.80027 7.12483 7.15199 7.20223 7.30422 7.66974 7.80933 8.01233 8.44482 9.05847 9.64147 11.13040 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014457 B = 0.003741 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.280624 B = 7483.234198 C = 8582.944493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.066 4.066 3 C -0.128 4.128 4 C 0.037 3.963 5 C -0.509 4.509 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.130 3.870 14 N -1.108 6.108 15 S 2.697 3.303 16 O -0.971 6.971 17 O -0.950 6.950 18 C -0.693 4.693 19 C 0.005 3.995 20 C -0.171 4.171 21 C -0.021 4.021 22 C -0.195 4.195 23 C 0.206 3.794 24 O -0.284 6.284 25 C 0.048 3.952 26 C -0.109 4.109 27 H 0.032 0.968 28 H 0.064 0.936 29 H 0.048 0.952 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.031 0.969 33 H 0.017 0.983 34 H 0.019 0.981 35 H 0.259 0.741 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.416 0.584 39 H 0.150 0.850 40 H 0.136 0.864 41 H 0.131 0.869 42 H 0.084 0.916 43 H 0.120 0.880 44 H 0.094 0.906 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.045 -0.528 18.059 19.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.067 4.067 3 C -0.185 4.185 4 C -0.001 4.001 5 C -0.548 4.548 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.203 1.203 13 C 0.005 3.995 14 N -0.871 5.871 15 S 2.785 3.215 16 O -0.961 6.961 17 O -0.940 6.940 18 C -0.779 4.779 19 C -0.014 4.014 20 C -0.190 4.190 21 C -0.039 4.039 22 C -0.197 4.197 23 C 0.158 3.842 24 O -0.196 6.196 25 C -0.026 4.026 26 C -0.147 4.147 27 H 0.051 0.949 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.050 0.950 33 H 0.035 0.965 34 H 0.037 0.963 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.252 0.748 39 H 0.167 0.833 40 H 0.154 0.846 41 H 0.148 0.852 42 H 0.102 0.898 43 H 0.138 0.862 44 H 0.112 0.888 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.326 -1.106 18.281 19.725 hybrid contribution 0.681 0.765 -1.092 1.497 sum 8.006 -0.340 17.190 18.966 Atomic orbital electron populations 1.21758 0.95194 1.01311 1.00300 1.20825 0.95631 0.95599 0.94686 1.21765 1.00297 0.96156 1.00307 1.19091 0.96146 0.95307 0.89535 1.21181 1.30996 1.12015 0.90568 0.92312 1.24988 0.95349 0.95091 0.98989 1.69951 1.37136 1.23095 1.23414 0.86726 0.79221 0.79743 0.82685 1.20388 1.21455 1.20319 1.21617 0.98074 0.96216 0.83626 1.55462 1.78326 1.30304 1.23005 1.01755 0.73513 0.73832 0.72425 1.93546 1.78035 1.63858 1.60711 1.93602 1.75498 1.39483 1.85414 1.30054 1.27227 1.13505 1.07128 1.20746 0.95506 0.93130 0.92035 1.21131 0.94111 1.01811 1.01988 1.20571 0.99728 0.92171 0.91421 1.20898 0.94203 1.04468 1.00081 1.18916 0.92201 0.88612 0.84499 1.87057 1.49765 1.43322 1.39409 1.24030 0.84725 0.90010 1.03843 1.21847 0.98498 0.97441 0.96867 0.94884 0.91665 0.93273 0.93526 0.91482 0.95041 0.96501 0.96258 0.93102 0.92115 0.90249 0.74753 0.83279 0.84622 0.85153 0.89816 0.86203 0.88771 0.88521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 8.05 37.16 0.30 -2.11 16 2 C -0.07 -1.28 0.55 -154.51 -0.08 -1.36 16 3 C -0.13 -2.29 8.05 37.16 0.30 -1.99 16 4 C 0.04 0.90 4.04 -27.89 -0.11 0.79 16 5 C -0.51 -13.50 7.65 -34.44 -0.26 -13.76 16 6 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.02 13.29 55.43 0.74 -25.29 16 9 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.13 2.26 3.61 -4.04 -0.01 2.25 16 14 N -1.11 -16.81 5.32 -10.61 -0.06 -16.86 16 15 S 2.70 41.59 5.64 -107.50 -0.61 40.98 16 16 O -0.97 -15.73 16.95 -57.17 -0.97 -16.70 16 17 O -0.95 -17.57 17.40 -57.17 -0.99 -18.56 16 18 C -0.69 -9.62 5.91 -39.31 -0.23 -9.86 16 19 C 0.00 0.06 9.52 -39.68 -0.38 -0.32 16 20 C -0.17 -1.62 10.07 -39.52 -0.40 -2.02 16 21 C -0.02 -0.19 10.03 -39.72 -0.40 -0.59 16 22 C -0.19 -2.21 6.27 -104.10 -0.65 -2.86 16 23 C 0.21 2.88 6.13 -38.96 -0.24 2.64 16 24 O -0.28 -4.15 8.25 -20.17 -0.17 -4.31 16 25 C 0.05 0.51 8.01 38.06 0.30 0.81 16 26 C -0.11 -0.97 7.12 -26.52 -0.19 -1.16 16 27 H 0.03 0.53 7.20 -51.93 -0.37 0.15 16 28 H 0.06 1.29 6.62 -51.93 -0.34 0.94 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.07 1.29 6.62 -51.93 -0.34 0.94 16 32 H 0.03 0.46 6.60 -51.93 -0.34 0.12 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.06 1.04 6.65 -51.93 -0.35 0.69 16 37 H 0.08 1.47 7.48 -51.93 -0.39 1.09 16 38 H 0.42 5.64 6.48 -34.47 -0.22 5.42 16 39 H 0.15 1.49 7.30 -52.49 -0.38 1.11 16 40 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 368.35 15.07 5.55 5.55 Total: -1.00 -33.79 368.35 -10.09 -43.88 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -6.40 Total: 3.23 kcal Atomic # 6 Polarization: -25.92 SS G_CDS: -2.16 Total: -28.07 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.68 Total: -42.15 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -2.13 Total: -39.57 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 41.59 SS G_CDS: -0.61 Total: 40.98 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.79 -10.09 -43.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420727905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.042 kcal (2) G-P(sol) polarization free energy of solvation -33.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds