Wall clock time and date at job start Sat Apr 11 2020 05:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46830 * 2 1 4 4 C 1.52996 * 109.47102 * 239.99942 * 2 1 3 5 5 C 1.50696 * 109.47630 * 59.99683 * 4 2 1 6 6 H 1.08000 * 119.99705 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00635 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99578 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00324 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47040 * 60.00280 * 9 7 5 11 11 H 1.48506 * 109.46870 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47195 * 300.00102 * 9 7 5 13 13 C 1.53001 * 109.47024 * 119.99893 * 2 1 3 14 14 N 1.46506 * 109.46867 * 300.00115 * 13 2 1 15 15 S 1.65597 * 119.99791 * 165.00419 * 14 13 2 16 16 O 1.42102 * 106.40060 * 178.54054 * 15 14 13 17 17 O 1.42101 * 106.40207 * 311.45359 * 15 14 13 18 18 C 1.76196 * 107.22133 * 64.99502 * 15 14 13 19 19 C 1.37978 * 119.87827 * 114.72663 * 18 15 14 20 20 C 1.38241 * 120.34988 * 179.81887 * 19 18 15 21 21 C 1.38395 * 119.77019 * 0.39748 * 20 19 18 22 22 C 1.37697 * 119.97204 * 359.67833 * 21 20 19 23 23 C 1.38928 * 120.79004 * 0.30944 * 22 21 20 24 24 O 1.36136 * 111.22655 * 179.28854 * 23 22 21 25 25 C 1.43763 * 109.26640 * 18.86240 * 24 23 22 26 26 C 1.51648 * 132.17579 * 180.54327 * 22 21 20 27 27 H 1.09002 * 109.47250 * 300.00319 * 1 2 3 28 28 H 1.08996 * 109.47311 * 60.00247 * 1 2 3 29 29 H 1.09002 * 109.47430 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46665 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.47348 * 299.99280 * 3 2 1 32 32 H 1.08992 * 109.47468 * 59.99805 * 3 2 1 33 33 H 1.09002 * 109.47313 * 180.02562 * 4 2 1 34 34 H 1.09008 * 109.46851 * 299.99881 * 4 2 1 35 35 H 0.97005 * 120.00103 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.47232 * 180.02562 * 13 2 1 37 37 H 1.09002 * 109.46985 * 59.99766 * 13 2 1 38 38 H 0.96995 * 120.00050 * 344.72503 * 14 13 2 39 39 H 1.08000 * 119.82516 * 0.07517 * 19 18 15 40 40 H 1.08000 * 120.11496 * 180.12370 * 20 19 18 41 41 H 1.07998 * 120.01222 * 179.70005 * 21 20 19 42 42 H 1.08998 * 110.75222 * 90.64684 * 25 24 23 43 43 H 1.09002 * 110.74928 * 213.81644 * 25 24 23 44 44 H 1.09006 * 110.93372 * 46.12932 * 26 22 21 45 45 H 1.08994 * 110.97298 * 282.45731 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 1 0.9171 0.8673 -2.3807 7 6 1.8711 -0.4817 -3.7319 8 7 2.6273 -1.5510 -3.8525 9 14 1.2490 0.3991 -5.2572 10 1 1.7441 1.7992 -5.2567 11 1 1.7440 -0.3011 -6.4696 12 1 -0.2360 0.3992 -5.2577 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0305 2.4454 15 16 1.6256 -0.7780 3.9213 16 8 1.1154 0.1512 4.8676 17 8 1.0838 -2.0790 3.7398 18 6 3.3300 -0.9985 4.3094 19 6 3.8821 -0.3319 5.3840 20 6 5.2174 -0.5007 5.6996 21 6 6.0055 -1.3365 4.9279 22 6 5.4569 -2.0015 3.8542 23 6 4.1163 -1.8403 3.5273 24 8 3.7856 -2.5721 2.4280 25 6 4.7750 -3.5949 2.2238 26 6 6.0458 -2.9720 2.8486 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6766 1.9563 0.8899 33 1 3.1300 -0.7217 -1.2490 34 1 1.6766 -1.7490 -1.2491 35 1 2.8617 -1.8825 -4.7335 36 1 3.1300 -0.7209 1.2495 37 1 1.6766 -1.7489 1.2493 38 1 1.1886 0.8661 2.3735 39 1 3.2668 0.3219 5.9842 40 1 5.6451 0.0214 6.5427 41 1 7.0503 -1.4675 5.1680 42 1 4.4972 -4.5106 2.7457 43 1 4.9184 -3.7866 1.1604 44 1 6.6475 -3.7320 3.3471 45 1 6.6323 -2.4455 2.0957 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420727905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:28 Heat of formation + Delta-G solvation = -114.024447 kcal Electronic energy + Delta-G solvation = -28638.340931 eV Core-core repulsion = 24746.946795 eV Total energy + Delta-G solvation = -3891.394137 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.23718 -39.22332 -38.64515 -38.17265 -36.98989 -35.24039 -33.92774 -33.63894 -31.34965 -30.29503 -28.95821 -27.93162 -27.26211 -24.81631 -24.63879 -23.72224 -23.09621 -20.44359 -19.95428 -19.09964 -18.40285 -18.33210 -18.12733 -17.62833 -17.08252 -16.87431 -16.47906 -16.11428 -15.64803 -15.52167 -14.99436 -14.78280 -14.48437 -14.37264 -14.07667 -13.99571 -13.89617 -13.79568 -13.38730 -13.28874 -13.22085 -13.13636 -12.87991 -12.83959 -12.68458 -12.61100 -12.52394 -12.28639 -12.16205 -11.97362 -11.89635 -11.68979 -11.49454 -10.94555 -10.83157 -10.47777 -10.45875 -10.31835 -9.32621 -8.10858 -6.17312 -0.64946 -0.23111 0.19368 1.43642 1.45308 1.52258 1.95224 2.08862 2.42190 2.46613 2.65954 3.23437 3.26887 3.40339 3.59294 3.89700 3.97082 4.07513 4.11422 4.15233 4.24449 4.28441 4.32549 4.51317 4.54957 4.75192 4.78773 4.80985 4.81778 4.90769 4.92691 4.96528 5.01029 5.15456 5.15958 5.22456 5.27349 5.49316 5.50104 5.52721 5.55792 5.61576 5.85474 5.93855 5.95877 6.09334 6.36583 6.96402 7.49460 9.01140 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014457 B = 0.003741 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.280624 B = 7483.234198 C = 8582.944493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.064 4.064 3 C -0.123 4.123 4 C 0.044 3.956 5 C -0.516 4.516 6 H 0.068 0.932 7 C 0.000 4.000 8 N -0.934 5.934 9 Si 0.954 3.046 10 H -0.268 1.268 11 H -0.289 1.289 12 H -0.271 1.271 13 C 0.146 3.854 14 N -1.104 6.104 15 S 2.709 3.291 16 O -0.980 6.980 17 O -0.989 6.989 18 C -0.707 4.707 19 C -0.010 4.010 20 C -0.161 4.161 21 C -0.014 4.014 22 C -0.202 4.202 23 C 0.174 3.826 24 O -0.318 6.318 25 C 0.034 3.966 26 C -0.100 4.100 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.035 0.965 30 H 0.043 0.957 31 H 0.053 0.947 32 H 0.066 0.934 33 H -0.007 1.007 34 H -0.013 1.013 35 H 0.259 0.741 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.424 0.576 39 H 0.161 0.839 40 H 0.174 0.826 41 H 0.170 0.830 42 H 0.093 0.907 43 H 0.121 0.879 44 H 0.124 0.876 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.503 1.091 19.637 21.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.065 4.065 3 C -0.181 4.181 4 C 0.007 3.993 5 C -0.554 4.554 6 H 0.086 0.914 7 C -0.197 4.197 8 N -0.575 5.575 9 Si 0.779 3.221 10 H -0.193 1.193 11 H -0.215 1.215 12 H -0.196 1.196 13 C 0.020 3.980 14 N -0.866 5.866 15 S 2.801 3.199 16 O -0.971 6.971 17 O -0.979 6.979 18 C -0.797 4.797 19 C -0.029 4.029 20 C -0.180 4.180 21 C -0.032 4.032 22 C -0.203 4.203 23 C 0.125 3.875 24 O -0.231 6.231 25 C -0.040 4.040 26 C -0.137 4.137 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.012 0.988 34 H 0.005 0.995 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.262 0.738 39 H 0.178 0.822 40 H 0.191 0.809 41 H 0.187 0.813 42 H 0.112 0.888 43 H 0.139 0.861 44 H 0.143 0.857 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.733 0.541 19.860 21.702 hybrid contribution 0.309 0.228 -1.489 1.538 sum 9.042 0.769 18.371 20.490 Atomic orbital electron populations 1.21729 0.94547 1.00826 1.01274 1.20696 0.96143 0.96401 0.93275 1.21705 1.00182 0.94794 1.01389 1.18934 0.94526 0.94070 0.91808 1.21572 1.30440 1.12070 0.91317 0.91437 1.25848 0.95683 0.95858 1.02324 1.70094 1.38669 1.24750 1.24023 0.85675 0.78822 0.78853 0.78723 1.19269 1.21475 1.19608 1.21242 0.98012 0.95152 0.83578 1.55259 1.78626 1.30437 1.22323 1.01052 0.74138 0.72765 0.71955 1.93522 1.79004 1.63857 1.60680 1.93552 1.77291 1.41238 1.85825 1.29737 1.25689 1.15379 1.08873 1.21052 0.96981 0.93314 0.91543 1.21612 0.92980 1.00939 1.02443 1.21089 1.01550 0.90594 0.89961 1.21293 0.93201 1.04899 1.00943 1.19237 0.93756 0.89494 0.84962 1.87002 1.51461 1.44410 1.40198 1.24299 0.85285 0.89932 1.04442 1.21877 0.97668 0.97632 0.96489 0.91831 0.92658 0.94554 0.93748 0.92749 0.91536 0.98844 0.99486 0.93197 0.91940 0.92098 0.73776 0.82200 0.80884 0.81278 0.88838 0.86091 0.85737 0.88020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.76 8.05 71.98 0.58 -4.18 16 2 C -0.06 -2.51 0.55 -52.18 -0.03 -2.54 16 3 C -0.12 -4.31 8.05 71.98 0.58 -3.73 16 4 C 0.04 2.25 4.04 29.85 0.12 2.37 16 5 C -0.52 -27.84 7.65 25.60 0.20 -27.65 16 6 H 0.07 3.46 5.68 -2.91 -0.02 3.45 16 7 C 0.00 0.00 5.46 84.65 0.46 0.46 16 8 N -0.93 -55.80 13.29 21.45 0.28 -55.52 16 9 Si 0.95 43.67 29.54 68.60 2.03 45.70 16 10 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 11 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 13 C 0.15 5.25 3.61 86.38 0.31 5.57 16 14 N -1.10 -33.37 5.32 -187.48 -1.00 -34.37 16 15 S 2.71 84.44 5.64 -56.49 -0.32 84.13 16 16 O -0.98 -31.28 16.95 -128.00 -2.17 -33.45 16 17 O -0.99 -38.07 17.40 -128.00 -2.23 -40.29 16 18 C -0.71 -19.35 5.91 22.45 0.13 -19.21 16 19 C -0.01 -0.20 9.52 22.21 0.21 0.01 16 20 C -0.16 -2.44 10.07 22.31 0.22 -2.22 16 21 C -0.01 -0.21 10.03 22.18 0.22 0.01 16 22 C -0.20 -4.17 6.27 -19.52 -0.12 -4.29 16 23 C 0.17 4.83 6.13 22.68 0.14 4.97 16 24 O -0.32 -9.70 8.25 -95.10 -0.78 -10.48 16 25 C 0.03 0.73 8.01 72.56 0.58 1.31 16 26 C -0.10 -1.61 7.12 30.73 0.22 -1.39 16 27 H 0.06 1.97 7.20 -2.39 -0.02 1.96 16 28 H 0.05 2.17 6.62 -2.39 -0.02 2.15 16 29 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.05 2.03 6.62 -2.38 -0.02 2.02 16 32 H 0.07 1.84 6.60 -2.39 -0.02 1.82 16 33 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 34 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 35 H 0.26 14.74 8.31 -92.70 -0.77 13.96 16 36 H 0.06 2.23 6.65 -2.39 -0.02 2.21 16 37 H 0.06 2.41 7.48 -2.39 -0.02 2.40 16 38 H 0.42 10.98 6.48 -96.75 -0.63 10.36 16 39 H 0.16 2.90 7.30 -2.91 -0.02 2.88 16 40 H 0.17 1.30 8.06 -2.91 -0.02 1.27 16 41 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 42 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.12 1.21 8.14 -2.38 -0.02 1.19 16 45 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -75.40 368.35 0.03 -75.37 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.38 Total: 19.42 kcal Atomic # 6 Polarization: -54.33 SS G_CDS: 3.83 Total: -50.51 kcal Atomic # 7 Polarization: -89.18 SS G_CDS: -0.71 Total: -89.89 kcal Atomic # 8 Polarization: -79.05 SS G_CDS: -5.18 Total: -84.23 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: 84.44 SS G_CDS: -0.32 Total: 84.13 kcal Total: -75.40 0.03 -75.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420727905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.650 kcal (2) G-P(sol) polarization free energy of solvation -75.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds