Wall clock time and date at job start Sat Apr 11 2020 05:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38287 * 119.97523 * 2 1 4 4 C 1.38240 * 120.11343 * 179.73039 * 3 2 1 5 5 C 1.38163 * 120.05424 * 0.53977 * 4 3 2 6 6 C 1.38712 * 119.94682 * 359.72986 * 5 4 3 7 7 O 1.35904 * 120.05788 * 179.97438 * 6 5 4 8 8 C 1.42896 * 117.00053 * 0.02724 * 7 6 5 9 9 C 1.53002 * 109.47124 * 179.97438 * 8 7 6 10 10 N 1.46502 * 109.46824 * 65.00134 * 9 8 7 11 11 S 1.65600 * 119.99630 * 165.00443 * 10 9 8 12 12 O 1.42104 * 104.27671 * 181.06865 * 11 10 9 13 13 O 1.42102 * 104.27408 * 308.92217 * 11 10 9 14 14 C 1.81394 * 104.45190 * 64.99448 * 11 10 9 15 15 C 1.53005 * 109.47031 * 173.81170 * 14 11 10 16 16 C 1.50703 * 115.54841 * 65.19896 * 15 14 11 17 17 H 1.08001 * 119.99481 * 264.78008 * 16 15 14 18 18 C 1.37872 * 120.00226 * 84.78341 * 16 15 14 19 19 N 1.31513 * 120.00168 * 352.23222 * 18 16 15 20 20 Si 1.86801 * 120.00054 * 172.23035 * 18 16 15 21 21 H 1.48498 * 109.47031 * 89.99612 * 20 18 16 22 22 H 1.48498 * 109.47542 * 210.00221 * 20 18 16 23 23 H 1.48504 * 109.46912 * 330.00412 * 20 18 16 24 24 C 1.52997 * 117.50008 * 279.52565 * 15 14 11 25 25 C 1.52998 * 117.49893 * 210.86493 * 15 14 11 26 26 C 1.38130 * 119.97162 * 180.27415 * 2 1 3 27 27 H 1.09000 * 109.47083 * 269.72659 * 1 2 3 28 28 H 1.08998 * 109.47240 * 29.72953 * 1 2 3 29 29 H 1.08998 * 109.47445 * 149.72644 * 1 2 3 30 30 H 1.08000 * 119.93829 * 359.97438 * 3 2 1 31 31 H 1.08003 * 119.97388 * 180.25162 * 4 3 2 32 32 H 1.08008 * 120.02805 * 179.75331 * 5 4 3 33 33 H 1.09004 * 109.46961 * 299.99857 * 8 7 6 34 34 H 1.09005 * 109.46981 * 59.99541 * 8 7 6 35 35 H 1.08998 * 109.46601 * 184.99935 * 9 8 7 36 36 H 1.08994 * 109.46678 * 305.00049 * 9 8 7 37 37 H 0.96993 * 120.00347 * 344.99414 * 10 9 8 38 38 H 1.08996 * 109.47397 * 293.80779 * 14 11 10 39 39 H 1.08999 * 109.47528 * 53.81443 * 14 11 10 40 40 H 0.97002 * 120.00067 * 185.03416 * 19 18 16 41 41 H 1.09000 * 117.49566 * 0.02562 * 24 15 14 42 42 H 1.09000 * 117.49971 * 145.02336 * 24 15 14 43 43 H 1.08998 * 117.49961 * 214.97882 * 25 15 14 44 44 H 1.09002 * 117.50156 * 359.97438 * 25 15 14 45 45 H 1.08003 * 120.02650 * 359.97245 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0056 5 6 4.2752 0.0071 0.0000 6 6 3.5846 -1.1959 -0.0056 7 8 4.2658 -2.3718 -0.0117 8 6 5.6927 -2.2950 -0.0113 9 6 6.2795 -3.7080 -0.0179 10 7 5.9278 -4.3769 -1.2730 11 16 6.7207 -5.7585 -1.7253 12 8 6.1437 -6.0996 -2.9783 13 8 8.0975 -5.4228 -1.6199 14 6 6.2641 -6.9770 -0.4614 15 6 6.8151 -8.3494 -0.8535 16 6 8.3176 -8.4630 -0.8809 17 1 8.8524 -8.3281 -1.8095 18 6 9.0094 -8.7389 0.2793 19 7 8.3790 -8.7521 1.4335 20 14 10.8420 -9.0942 0.2120 21 1 11.5981 -7.8244 0.3573 22 1 11.2082 -10.0175 1.3159 23 1 11.1768 -9.7232 -1.0909 24 6 6.0265 -9.1590 -1.8849 25 6 6.0215 -9.5813 -0.4135 26 6 2.1971 -1.1966 -0.0057 27 1 -0.3633 -0.0049 1.0277 28 1 -0.3633 0.8924 -0.5096 29 1 -0.3634 -0.8875 -0.5181 30 1 1.6565 2.1324 -0.0004 31 1 4.1176 2.1381 0.0097 32 1 5.3552 0.0102 0.0004 33 1 6.0278 -1.7578 -0.8986 34 1 6.0278 -1.7669 0.8814 35 1 7.3643 -3.6512 0.0719 36 1 5.8745 -4.2735 0.8212 37 1 5.2304 -4.0106 -1.8389 38 1 6.6830 -6.6783 0.4994 39 1 5.1782 -7.0302 -0.3836 40 1 8.8772 -8.8737 2.2569 41 1 5.1154 -8.7136 -2.2843 42 1 6.5944 -9.7740 -2.5829 43 1 6.5861 -10.4740 -0.1443 44 1 5.1070 -9.4141 0.1556 45 1 1.6570 -2.1319 -0.0098 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450991268.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:44 Heat of formation + Delta-G solvation = -69.005810 kcal Electronic energy + Delta-G solvation = -26921.200512 eV Core-core repulsion = 23031.758530 eV Total energy + Delta-G solvation = -3889.441982 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.38422 -38.07414 -36.74630 -36.26099 -35.22772 -34.93627 -32.76546 -32.04563 -30.67866 -28.67123 -28.15275 -27.20213 -25.45360 -23.33993 -22.76295 -21.20400 -21.03586 -19.74572 -18.73552 -18.05779 -17.01647 -16.70117 -16.34860 -16.27797 -16.02761 -15.33085 -15.08449 -14.71228 -14.60163 -14.27041 -14.01999 -13.81646 -13.64255 -13.46764 -13.20384 -13.00004 -12.51463 -12.37753 -12.12021 -11.92550 -11.82734 -11.77865 -11.33827 -11.27439 -11.16747 -11.05110 -11.01579 -10.94351 -10.88829 -10.57881 -10.44796 -10.12054 -9.74069 -9.24566 -9.04592 -8.94999 -8.56480 -8.40487 -8.08801 -6.14330 -4.24723 1.05995 1.08048 1.21760 2.93525 3.30244 3.35695 3.41090 3.45625 3.50894 4.36780 4.45407 4.53427 4.55628 4.72750 4.79338 4.81040 4.97019 5.02723 5.06698 5.07966 5.15123 5.22367 5.23837 5.29792 5.42425 5.46381 5.55897 5.69898 5.70946 5.82116 5.97596 6.07307 6.07966 6.18062 6.27671 6.33002 6.38362 6.53882 6.62185 6.73489 6.99345 7.19916 7.23180 7.29710 7.39928 7.80094 8.20701 8.80792 9.46294 10.93276 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019283 B = 0.002499 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.711037 B =11202.540303 C =11652.505073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.049 4.049 3 C -0.163 4.163 4 C -0.077 4.077 5 C -0.217 4.217 6 C 0.138 3.862 7 O -0.310 6.310 8 C 0.053 3.947 9 C 0.120 3.880 10 N -1.132 6.132 11 S 2.608 3.392 12 O -0.973 6.973 13 O -0.951 6.951 14 C -0.553 4.553 15 C 0.043 3.957 16 C -0.515 4.515 17 H 0.068 0.932 18 C 0.082 3.918 19 N -0.875 5.875 20 Si 0.892 3.108 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.270 1.270 24 C -0.208 4.208 25 C -0.141 4.141 26 C -0.155 4.155 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.128 0.872 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.413 0.587 38 H 0.133 0.867 39 H 0.100 0.900 40 H 0.263 0.737 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.066 0.934 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.469 18.231 0.886 22.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.049 4.049 3 C -0.182 4.182 4 C -0.095 4.095 5 C -0.235 4.235 6 C 0.092 3.908 7 O -0.223 6.223 8 C -0.024 4.024 9 C -0.007 4.007 10 N -0.889 5.889 11 S 2.705 3.295 12 O -0.964 6.964 13 O -0.941 6.941 14 C -0.687 4.687 15 C 0.041 3.959 16 C -0.553 4.553 17 H 0.086 0.914 18 C -0.123 4.123 19 N -0.510 5.510 20 Si 0.718 3.282 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.194 1.194 24 C -0.245 4.245 25 C -0.180 4.180 26 C -0.173 4.173 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.146 0.854 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.121 0.879 36 H 0.095 0.905 37 H 0.245 0.755 38 H 0.151 0.849 39 H 0.119 0.881 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.085 0.915 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.791 17.822 0.442 21.374 hybrid contribution 0.498 0.047 0.626 0.802 sum -11.292 17.869 1.068 21.165 Atomic orbital electron populations 1.20815 0.90773 1.03022 1.02577 1.19716 0.96058 0.92289 0.96874 1.20924 0.94173 0.97496 1.05557 1.20921 0.94170 0.97398 0.97012 1.21290 1.00424 0.92284 1.09532 1.19019 0.91787 0.84792 0.95205 1.86113 1.20106 1.27891 1.88221 1.23101 0.78315 0.98492 1.02469 1.21328 1.00763 0.91496 0.87076 1.55938 1.55721 1.45151 1.32106 1.05135 0.74251 0.74068 0.76090 1.93508 1.79129 1.83609 1.40117 1.93531 1.31899 1.81713 1.86980 1.29969 1.07555 1.13777 1.17369 1.18280 0.93401 0.85582 0.98683 1.20527 0.88390 1.50783 0.95557 0.91358 1.24954 0.98544 0.93576 0.95260 1.69980 1.35752 1.47880 0.97411 0.86579 0.85028 0.78575 0.77983 1.20059 1.21098 1.19448 1.23197 1.01883 1.06546 0.92915 1.22551 1.00300 1.00628 0.94563 1.20338 0.90982 0.98730 1.07277 0.90879 0.91346 0.91225 0.86096 0.85861 0.85380 0.90938 0.90486 0.87912 0.90522 0.75453 0.84881 0.88137 0.92747 0.90654 0.89539 0.89603 0.91522 0.85128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 10.01 36.01 0.36 -0.37 16 2 C -0.05 -0.44 5.88 -104.64 -0.62 -1.06 16 3 C -0.16 -1.38 9.70 -39.56 -0.38 -1.76 16 4 C -0.08 -0.66 10.04 -39.61 -0.40 -1.06 16 5 C -0.22 -2.11 9.04 -39.43 -0.36 -2.47 16 6 C 0.14 1.55 6.69 -39.22 -0.26 1.29 16 7 O -0.31 -3.70 9.94 -19.44 -0.19 -3.89 16 8 C 0.05 0.54 4.93 37.16 0.18 0.72 16 9 C 0.12 1.51 6.52 -4.04 -0.03 1.48 16 10 N -1.13 -16.82 5.85 -10.61 -0.06 -16.88 16 11 S 2.61 52.02 5.19 -107.50 -0.56 51.46 16 12 O -0.97 -21.43 18.08 -57.54 -1.04 -22.47 16 13 O -0.95 -22.12 17.17 -57.54 -0.99 -23.11 16 14 C -0.55 -11.50 5.93 37.16 0.22 -11.28 16 15 C 0.04 1.04 1.32 -155.66 -0.21 0.84 16 16 C -0.52 -14.03 8.18 -34.44 -0.28 -14.31 16 17 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 18 C 0.08 2.21 5.38 -17.82 -0.10 2.11 16 19 N -0.87 -23.84 12.98 55.43 0.72 -23.12 16 20 Si 0.89 21.24 29.55 -169.99 -5.02 16.22 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 24 C -0.21 -4.59 9.96 -26.69 -0.27 -4.86 16 25 C -0.14 -3.22 9.49 -26.69 -0.25 -3.48 16 26 C -0.15 -1.62 9.64 -39.43 -0.38 -2.00 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 29 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 30 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 31 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 32 H 0.13 1.05 6.30 -52.48 -0.33 0.72 16 33 H 0.07 0.68 7.66 -51.93 -0.40 0.29 16 34 H 0.08 0.63 7.66 -51.93 -0.40 0.23 16 35 H 0.10 1.28 7.69 -51.93 -0.40 0.88 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.41 5.52 8.47 -34.47 -0.29 5.23 16 38 H 0.13 2.83 8.14 -51.93 -0.42 2.41 16 39 H 0.10 1.79 8.09 -51.92 -0.42 1.37 16 40 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 41 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 42 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 43 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16 44 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 45 H 0.13 1.28 8.06 -52.48 -0.42 0.85 16 LS Contribution 392.14 15.07 5.91 5.91 Total: -1.00 -33.40 392.14 -10.85 -44.25 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -6.85 Total: 7.84 kcal Atomic # 6 Polarization: -33.46 SS G_CDS: -2.76 Total: -36.22 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.66 Total: -40.00 kcal Atomic # 8 Polarization: -47.25 SS G_CDS: -2.22 Total: -49.47 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 52.02 SS G_CDS: -0.56 Total: 51.46 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.40 -10.85 -44.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450991268.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.757 kcal (2) G-P(sol) polarization free energy of solvation -33.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds