Wall clock time and date at job start Sat Apr 11 2020 05:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38287 * 119.97523 * 2 1 4 4 C 1.38240 * 120.11343 * 179.73039 * 3 2 1 5 5 C 1.38163 * 120.05424 * 0.53977 * 4 3 2 6 6 C 1.38712 * 119.94682 * 359.72986 * 5 4 3 7 7 O 1.35904 * 120.05788 * 179.97438 * 6 5 4 8 8 C 1.42896 * 117.00053 * 0.02724 * 7 6 5 9 9 C 1.53002 * 109.47124 * 179.97438 * 8 7 6 10 10 N 1.46502 * 109.46824 * 65.00134 * 9 8 7 11 11 S 1.65600 * 119.99630 * 165.00443 * 10 9 8 12 12 O 1.42104 * 104.27671 * 181.06865 * 11 10 9 13 13 O 1.42102 * 104.27408 * 308.92217 * 11 10 9 14 14 C 1.81394 * 104.45190 * 64.99448 * 11 10 9 15 15 C 1.53005 * 109.47031 * 173.81170 * 14 11 10 16 16 C 1.50703 * 115.54841 * 65.19896 * 15 14 11 17 17 H 1.08001 * 119.99481 * 264.78008 * 16 15 14 18 18 C 1.37872 * 120.00226 * 84.78341 * 16 15 14 19 19 N 1.31513 * 120.00168 * 352.23222 * 18 16 15 20 20 Si 1.86801 * 120.00054 * 172.23035 * 18 16 15 21 21 H 1.48498 * 109.47031 * 89.99612 * 20 18 16 22 22 H 1.48498 * 109.47542 * 210.00221 * 20 18 16 23 23 H 1.48504 * 109.46912 * 330.00412 * 20 18 16 24 24 C 1.52997 * 117.50008 * 279.52565 * 15 14 11 25 25 C 1.52998 * 117.49893 * 210.86493 * 15 14 11 26 26 C 1.38130 * 119.97162 * 180.27415 * 2 1 3 27 27 H 1.09000 * 109.47083 * 269.72659 * 1 2 3 28 28 H 1.08998 * 109.47240 * 29.72953 * 1 2 3 29 29 H 1.08998 * 109.47445 * 149.72644 * 1 2 3 30 30 H 1.08000 * 119.93829 * 359.97438 * 3 2 1 31 31 H 1.08003 * 119.97388 * 180.25162 * 4 3 2 32 32 H 1.08008 * 120.02805 * 179.75331 * 5 4 3 33 33 H 1.09004 * 109.46961 * 299.99857 * 8 7 6 34 34 H 1.09005 * 109.46981 * 59.99541 * 8 7 6 35 35 H 1.08998 * 109.46601 * 184.99935 * 9 8 7 36 36 H 1.08994 * 109.46678 * 305.00049 * 9 8 7 37 37 H 0.96993 * 120.00347 * 344.99414 * 10 9 8 38 38 H 1.08996 * 109.47397 * 293.80779 * 14 11 10 39 39 H 1.08999 * 109.47528 * 53.81443 * 14 11 10 40 40 H 0.97002 * 120.00067 * 185.03416 * 19 18 16 41 41 H 1.09000 * 117.49566 * 0.02562 * 24 15 14 42 42 H 1.09000 * 117.49971 * 145.02336 * 24 15 14 43 43 H 1.08998 * 117.49961 * 214.97882 * 25 15 14 44 44 H 1.09002 * 117.50156 * 359.97438 * 25 15 14 45 45 H 1.08003 * 120.02650 * 359.97245 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0056 5 6 4.2752 0.0071 0.0000 6 6 3.5846 -1.1959 -0.0056 7 8 4.2658 -2.3718 -0.0117 8 6 5.6927 -2.2950 -0.0113 9 6 6.2795 -3.7080 -0.0179 10 7 5.9278 -4.3769 -1.2730 11 16 6.7207 -5.7585 -1.7253 12 8 6.1437 -6.0996 -2.9783 13 8 8.0975 -5.4228 -1.6199 14 6 6.2641 -6.9770 -0.4614 15 6 6.8151 -8.3494 -0.8535 16 6 8.3176 -8.4630 -0.8809 17 1 8.8524 -8.3281 -1.8095 18 6 9.0094 -8.7389 0.2793 19 7 8.3790 -8.7521 1.4335 20 14 10.8420 -9.0942 0.2120 21 1 11.5981 -7.8244 0.3573 22 1 11.2082 -10.0175 1.3159 23 1 11.1768 -9.7232 -1.0909 24 6 6.0265 -9.1590 -1.8849 25 6 6.0215 -9.5813 -0.4135 26 6 2.1971 -1.1966 -0.0057 27 1 -0.3633 -0.0049 1.0277 28 1 -0.3633 0.8924 -0.5096 29 1 -0.3634 -0.8875 -0.5181 30 1 1.6565 2.1324 -0.0004 31 1 4.1176 2.1381 0.0097 32 1 5.3552 0.0102 0.0004 33 1 6.0278 -1.7578 -0.8986 34 1 6.0278 -1.7669 0.8814 35 1 7.3643 -3.6512 0.0719 36 1 5.8745 -4.2735 0.8212 37 1 5.2304 -4.0106 -1.8389 38 1 6.6830 -6.6783 0.4994 39 1 5.1782 -7.0302 -0.3836 40 1 8.8772 -8.8737 2.2569 41 1 5.1154 -8.7136 -2.2843 42 1 6.5944 -9.7740 -2.5829 43 1 6.5861 -10.4740 -0.1443 44 1 5.1070 -9.4141 0.1556 45 1 1.6570 -2.1319 -0.0098 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450991268.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:43 Heat of formation + Delta-G solvation = -90.601471 kcal Electronic energy + Delta-G solvation = -26922.136970 eV Core-core repulsion = 23031.758530 eV Total energy + Delta-G solvation = -3890.378440 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.11997 -38.82456 -38.56094 -37.94738 -36.81372 -36.17676 -34.08004 -33.37731 -31.46513 -29.85113 -29.57947 -27.79884 -27.47938 -24.23633 -23.45397 -22.99389 -21.77258 -21.52548 -20.29032 -18.88594 -18.42640 -18.33611 -17.63350 -17.11237 -16.83117 -16.72709 -16.65702 -16.45753 -15.81127 -15.41098 -15.25540 -14.91465 -14.76361 -14.39532 -14.13822 -14.01841 -13.73629 -13.65683 -13.51220 -13.13222 -12.93938 -12.90228 -12.89550 -12.85977 -12.83105 -12.44656 -12.42432 -12.36996 -12.21479 -11.91507 -11.79174 -11.71082 -11.54915 -10.86858 -10.56648 -10.51668 -9.87043 -9.71614 -9.12277 -8.18616 -6.33341 -0.50727 0.38678 0.51571 1.39563 1.41671 1.50389 1.98832 2.20626 2.40217 2.82390 2.93884 3.08400 3.38362 3.44927 3.68364 3.92652 3.93299 4.00136 4.08890 4.18477 4.28363 4.34102 4.35711 4.44544 4.48976 4.54109 4.57546 4.60403 4.69906 4.83967 4.84818 4.89669 4.94167 4.97865 5.05585 5.21332 5.25952 5.39346 5.46944 5.52224 5.58647 5.68161 5.72412 5.89235 6.10716 6.23364 6.46949 6.72773 7.38835 8.88372 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019283 B = 0.002499 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.711037 B =11202.540303 C =11652.505073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.056 4.056 3 C -0.167 4.167 4 C -0.081 4.081 5 C -0.226 4.226 6 C 0.115 3.885 7 O -0.327 6.327 8 C 0.056 3.944 9 C 0.109 3.891 10 N -1.115 6.115 11 S 2.627 3.373 12 O -0.996 6.996 13 O -0.989 6.989 14 C -0.553 4.553 15 C 0.012 3.988 16 C -0.535 4.535 17 H 0.049 0.951 18 C 0.043 3.957 19 N -0.892 5.892 20 Si 0.936 3.064 21 H -0.275 1.275 22 H -0.274 1.274 23 H -0.271 1.271 24 C -0.198 4.198 25 C -0.139 4.139 26 C -0.176 4.176 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.144 0.856 31 H 0.147 0.853 32 H 0.141 0.859 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.085 0.915 37 H 0.422 0.578 38 H 0.126 0.874 39 H 0.131 0.869 40 H 0.266 0.734 41 H 0.097 0.903 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.087 0.913 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.536 20.004 1.294 24.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.056 4.056 3 C -0.185 4.185 4 C -0.099 4.099 5 C -0.245 4.245 6 C 0.070 3.930 7 O -0.241 6.241 8 C -0.021 4.021 9 C -0.017 4.017 10 N -0.877 5.877 11 S 2.724 3.276 12 O -0.987 6.987 13 O -0.979 6.979 14 C -0.685 4.685 15 C 0.009 3.991 16 C -0.572 4.572 17 H 0.067 0.933 18 C -0.160 4.160 19 N -0.528 5.528 20 Si 0.761 3.239 21 H -0.200 1.200 22 H -0.199 1.199 23 H -0.195 1.195 24 C -0.235 4.235 25 C -0.178 4.178 26 C -0.194 4.194 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.088 0.912 30 H 0.162 0.838 31 H 0.165 0.835 32 H 0.159 0.841 33 H 0.099 0.901 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.103 0.897 37 H 0.257 0.743 38 H 0.144 0.856 39 H 0.149 0.851 40 H 0.075 0.925 41 H 0.116 0.884 42 H 0.101 0.899 43 H 0.085 0.915 44 H 0.105 0.895 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.866 19.588 0.845 23.451 hybrid contribution 0.761 -0.433 0.499 1.008 sum -12.105 19.155 1.344 22.699 Atomic orbital electron populations 1.20866 0.89101 1.03798 1.03322 1.20054 0.97422 0.92013 0.96112 1.21280 0.94441 0.98227 1.04601 1.21278 0.94552 0.98005 0.96091 1.21516 1.01229 0.92196 1.09550 1.19253 0.92166 0.85050 0.96538 1.86061 1.20656 1.28703 1.88706 1.23111 0.77896 0.96950 1.04108 1.21594 1.01180 0.92979 0.85935 1.55443 1.55493 1.43519 1.33220 1.04255 0.73510 0.74467 0.75353 1.93465 1.79300 1.84450 1.41468 1.93481 1.34552 1.82499 1.87367 1.29875 1.09318 1.12247 1.17090 1.18420 0.92411 0.87566 1.00656 1.20698 0.90408 1.51142 0.94944 0.93270 1.25518 1.01720 0.93618 0.95161 1.70022 1.36777 1.48343 0.97618 0.85885 0.81373 0.78484 0.78119 1.20043 1.19935 1.19548 1.23242 1.02178 1.05601 0.92473 1.22508 1.00565 0.99320 0.95406 1.20534 0.91134 0.99417 1.08353 0.90046 0.89902 0.91158 0.83846 0.83529 0.84126 0.90080 0.88050 0.87935 0.89727 0.74283 0.85594 0.85113 0.92509 0.88437 0.89933 0.91508 0.89487 0.85421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 10.01 71.24 0.71 -0.54 16 2 C -0.06 -0.92 5.88 -19.88 -0.12 -1.04 16 3 C -0.17 -2.46 9.70 22.28 0.22 -2.24 16 4 C -0.08 -1.22 10.04 22.25 0.22 -1.00 16 5 C -0.23 -4.04 9.04 22.37 0.20 -3.84 16 6 C 0.12 2.49 6.69 22.51 0.15 2.64 16 7 O -0.33 -7.48 9.94 -92.46 -0.92 -8.40 16 8 C 0.06 1.05 4.93 71.98 0.36 1.41 16 9 C 0.11 2.61 6.52 86.38 0.56 3.17 16 10 N -1.12 -32.04 5.85 -187.49 -1.10 -33.14 16 11 S 2.63 103.92 5.19 -56.49 -0.29 103.63 16 12 O -1.00 -43.40 18.08 -127.65 -2.31 -45.70 16 13 O -0.99 -46.46 17.17 -127.65 -2.19 -48.65 16 14 C -0.55 -22.54 5.93 71.98 0.43 -22.12 16 15 C 0.01 0.56 1.32 -52.93 -0.07 0.49 16 16 C -0.53 -29.48 8.18 25.60 0.21 -29.27 16 17 H 0.05 2.82 7.83 -2.91 -0.02 2.79 16 18 C 0.04 2.33 5.38 84.65 0.46 2.78 16 19 N -0.89 -48.60 12.98 21.45 0.28 -48.32 16 20 Si 0.94 43.66 29.55 68.60 2.03 45.69 16 21 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 24 C -0.20 -8.57 9.96 30.62 0.30 -8.26 16 25 C -0.14 -6.25 9.49 30.62 0.29 -5.96 16 26 C -0.18 -3.59 9.64 22.37 0.22 -3.38 16 27 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.08 0.66 8.08 -2.39 -0.02 0.64 16 29 H 0.07 0.75 8.08 -2.39 -0.02 0.73 16 30 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 31 H 0.15 1.43 8.06 -2.91 -0.02 1.40 16 32 H 0.14 2.02 6.30 -2.91 -0.02 2.00 16 33 H 0.08 1.39 7.66 -2.39 -0.02 1.37 16 34 H 0.10 1.44 7.66 -2.38 -0.02 1.42 16 35 H 0.10 2.49 7.69 -2.39 -0.02 2.47 16 36 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.42 10.80 8.47 -96.75 -0.82 9.98 16 38 H 0.13 5.32 8.14 -2.39 -0.02 5.30 16 39 H 0.13 4.41 8.09 -2.39 -0.02 4.39 16 40 H 0.27 13.74 8.32 -92.71 -0.77 12.97 16 41 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 42 H 0.08 3.58 8.14 -2.39 -0.02 3.57 16 43 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 44 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 45 H 0.13 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -71.28 392.14 -0.19 -71.47 By element: Atomic # 1 Polarization: 30.39 SS G_CDS: 0.17 Total: 30.56 kcal Atomic # 6 Polarization: -71.28 SS G_CDS: 4.14 Total: -67.14 kcal Atomic # 7 Polarization: -80.64 SS G_CDS: -0.82 Total: -81.46 kcal Atomic # 8 Polarization: -97.33 SS G_CDS: -5.42 Total: -102.75 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: 103.92 SS G_CDS: -0.29 Total: 103.63 kcal Total: -71.28 -0.19 -71.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450991268.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.132 kcal (2) G-P(sol) polarization free energy of solvation -71.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds