Wall clock time and date at job start Sat Apr 11 2020 05:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35901 * 117.00067 * 2 1 4 4 C 1.38756 * 120.05585 * 359.72602 * 3 2 1 5 5 C 1.38119 * 119.94408 * 179.79078 * 4 3 2 6 6 C 1.50697 * 119.97515 * 180.20499 * 5 4 3 7 7 N 1.46499 * 109.47241 * 270.27654 * 6 5 4 8 8 S 1.65601 * 119.99910 * 164.99494 * 7 6 5 9 9 O 1.42094 * 104.27919 * 181.06895 * 8 7 6 10 10 O 1.42103 * 104.28095 * 308.93181 * 8 7 6 11 11 C 1.81409 * 104.44808 * 65.00059 * 8 7 6 12 12 C 1.53003 * 109.47085 * 173.80903 * 11 8 7 13 13 C 1.50698 * 115.54661 * 65.19834 * 12 11 8 14 14 H 1.08004 * 120.00035 * 264.78266 * 13 12 11 15 15 C 1.37882 * 119.99756 * 84.78055 * 13 12 11 16 16 N 1.31506 * 120.00475 * 352.22598 * 15 13 12 17 17 Si 1.86805 * 119.99504 * 172.22425 * 15 13 12 18 18 H 1.48501 * 109.47296 * 60.00537 * 17 15 13 19 19 H 1.48500 * 109.46734 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47183 * 299.99926 * 17 15 13 21 21 C 1.52994 * 117.50193 * 279.52694 * 12 11 8 22 22 C 1.53002 * 117.49846 * 210.86612 * 12 11 8 23 23 C 1.38292 * 120.05331 * 0.48384 * 5 4 3 24 24 C 1.38240 * 120.11243 * 359.74364 * 23 5 4 25 25 C 1.38162 * 120.05579 * 0.02562 * 24 23 5 26 26 C 1.50707 * 120.02872 * 179.97438 * 25 24 23 27 27 H 1.08996 * 109.47251 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47171 * 300.00102 * 1 2 3 29 29 H 1.09001 * 109.46853 * 59.99853 * 1 2 3 30 30 H 1.07996 * 120.02791 * 359.97438 * 4 3 2 31 31 H 1.09002 * 109.47018 * 30.27887 * 6 5 4 32 32 H 1.09005 * 109.47190 * 150.27474 * 6 5 4 33 33 H 0.96994 * 120.00186 * 344.99715 * 7 6 5 34 34 H 1.08998 * 109.47460 * 293.81731 * 11 8 7 35 35 H 1.09005 * 109.46668 * 53.81028 * 11 8 7 36 36 H 0.97002 * 120.00573 * 185.02657 * 16 15 13 37 37 H 1.09009 * 117.49836 * 0.02562 * 21 12 11 38 38 H 1.08992 * 117.50175 * 145.02228 * 21 12 11 39 39 H 1.09001 * 117.49771 * 214.98368 * 22 12 11 40 40 H 1.09000 * 117.49482 * 359.97438 * 22 12 11 41 41 H 1.08004 * 119.94229 * 179.72286 * 23 5 4 42 42 H 1.08008 * 119.97183 * 179.97438 * 24 23 5 43 43 H 1.08996 * 109.47239 * 270.02781 * 26 25 24 44 44 H 1.08994 * 109.46608 * 30.02491 * 26 25 24 45 45 H 1.08996 * 109.47172 * 150.01902 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9209 3.6047 -0.0014 6 6 1.1020 4.8698 -0.0029 7 7 0.8368 5.2782 -1.3846 8 16 -0.3345 6.4042 -1.7049 9 8 -0.3254 6.5264 -3.1205 10 8 -1.4814 5.9218 -1.0185 11 6 0.2772 7.9264 -0.9307 12 6 -0.6502 9.0893 -1.2893 13 6 -2.0524 8.9937 -0.7457 14 1 -2.8419 8.5827 -1.3575 15 6 -2.3275 9.4308 0.5327 16 7 -1.3454 9.7878 1.3312 17 14 -4.0953 9.5159 1.1305 18 1 -4.7020 8.1616 1.0762 19 1 -4.1212 10.0135 2.5294 20 1 -4.8677 10.4396 0.2616 21 6 -0.4672 9.7417 -2.6610 22 6 -0.0273 10.4827 -1.3959 23 6 3.3020 3.6757 -0.0014 24 6 4.0560 2.5171 -0.0004 25 6 3.4311 1.2848 0.0000 26 6 4.2537 0.0221 0.0005 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.2129 2.3204 -0.0106 31 1 0.1575 4.6919 0.5111 32 1 1.6517 5.6591 0.5101 33 1 1.3472 4.8890 -2.1118 34 1 0.2997 7.8000 0.1517 35 1 1.2833 8.1391 -1.2925 36 1 -1.5318 10.0255 2.2530 37 1 0.3136 9.3422 -3.3083 38 1 -1.3610 10.1021 -3.1701 39 1 -0.6319 11.3303 -1.0732 40 1 1.0432 10.5710 -1.2102 41 1 3.7923 4.6380 -0.0025 42 1 5.1345 2.5752 -0.0008 43 1 4.4525 -0.2825 -1.0270 44 1 5.1975 0.2036 0.5147 45 1 3.7062 -0.7680 0.5143 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451102549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:51 Heat of formation + Delta-G solvation = -89.896461 kcal Electronic energy + Delta-G solvation = -27386.959647 eV Core-core repulsion = 23496.611778 eV Total energy + Delta-G solvation = -3890.347869 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.27277 -38.76697 -38.55624 -37.95210 -36.82801 -36.37685 -34.08119 -33.37631 -31.12361 -29.84465 -28.87121 -28.37335 -27.47885 -25.21427 -23.19105 -22.98294 -22.03220 -21.51910 -20.26396 -18.93392 -18.39777 -18.17468 -17.49872 -17.03121 -16.78209 -16.71309 -16.66491 -16.41204 -15.88288 -15.46520 -15.16485 -15.04168 -14.88387 -14.41140 -14.14191 -13.96533 -13.73870 -13.64891 -13.17232 -13.12276 -13.06557 -12.93920 -12.91448 -12.84695 -12.82841 -12.69856 -12.43813 -12.23825 -12.20903 -11.96690 -11.90943 -11.72834 -11.55252 -10.87503 -10.57251 -10.52275 -9.87841 -9.74592 -9.08170 -8.19014 -6.33493 -0.55751 0.26990 0.46385 1.39562 1.41046 1.48223 2.04926 2.36035 2.39948 2.76557 2.93634 3.08111 3.39200 3.43163 3.57615 3.84110 3.97542 4.02201 4.19055 4.26440 4.29804 4.33064 4.33632 4.41825 4.52804 4.60464 4.63430 4.64961 4.71140 4.80231 4.82683 4.86603 4.89581 4.94215 4.99027 5.22515 5.30186 5.35085 5.47781 5.53390 5.59965 5.61349 5.71986 5.84929 6.11205 6.23363 6.39772 6.72142 7.38631 8.87691 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016031 B = 0.002993 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.154168 B = 9351.433415 C = 9927.660064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.326 6.326 3 C 0.106 3.894 4 C -0.201 4.201 5 C -0.070 4.070 6 C 0.150 3.850 7 N -1.111 6.111 8 S 2.623 3.377 9 O -0.996 6.996 10 O -0.994 6.994 11 C -0.550 4.550 12 C 0.011 3.989 13 C -0.538 4.538 14 H 0.047 0.953 15 C 0.045 3.955 16 N -0.890 5.890 17 Si 0.933 3.067 18 H -0.277 1.277 19 H -0.273 1.273 20 H -0.269 1.269 21 C -0.198 4.198 22 C -0.137 4.137 23 C -0.137 4.137 24 C -0.084 4.084 25 C -0.124 4.124 26 C -0.102 4.102 27 H 0.123 0.877 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.127 0.873 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.421 0.579 34 H 0.126 0.874 35 H 0.137 0.863 36 H 0.266 0.734 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.090 0.910 41 H 0.148 0.852 42 H 0.159 0.841 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.419 -16.403 -0.308 21.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.239 6.239 3 C 0.061 3.939 4 C -0.220 4.220 5 C -0.072 4.072 6 C 0.024 3.976 7 N -0.871 5.871 8 S 2.721 3.279 9 O -0.986 6.986 10 O -0.983 6.983 11 C -0.683 4.683 12 C 0.009 3.991 13 C -0.575 4.575 14 H 0.066 0.934 15 C -0.158 4.158 16 N -0.525 5.525 17 Si 0.758 3.242 18 H -0.203 1.203 19 H -0.198 1.198 20 H -0.194 1.194 21 C -0.235 4.235 22 C -0.176 4.176 23 C -0.155 4.155 24 C -0.101 4.101 25 C -0.125 4.125 26 C -0.158 4.158 27 H 0.142 0.858 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.145 0.855 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.257 0.743 34 H 0.145 0.855 35 H 0.155 0.845 36 H 0.075 0.925 37 H 0.118 0.882 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.108 0.892 41 H 0.165 0.835 42 H 0.177 0.823 43 H 0.092 0.908 44 H 0.102 0.898 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.598 -16.583 -0.461 20.830 hybrid contribution -1.023 0.560 0.557 1.293 sum 11.575 -16.022 0.096 19.766 Atomic orbital electron populations 1.23281 0.77136 1.05461 1.01693 1.86015 1.22607 1.26539 1.88783 1.19039 0.92522 0.84222 0.98089 1.21304 1.00478 0.92255 1.07979 1.19573 0.94482 0.92974 1.00180 1.20337 0.99851 0.95250 0.82122 1.55522 1.58388 1.58843 1.14339 1.04381 0.73788 0.76175 0.73600 1.93464 1.86911 1.87485 1.30732 1.93478 1.49298 1.79143 1.76425 1.29856 1.08869 1.16290 1.13281 1.18398 0.93635 0.90938 0.96150 1.20685 0.93040 1.43589 1.00198 0.93443 1.25486 1.00232 0.93422 0.96703 1.69997 1.32382 1.44282 1.05888 0.85995 0.81658 0.78616 0.77892 1.20279 1.19799 1.19428 1.23249 1.02807 1.06487 0.90986 1.22517 0.99023 0.95962 1.00130 1.21287 0.92291 1.00124 1.01841 1.21214 1.01244 0.90137 0.97535 1.19697 0.90414 0.97686 1.04715 1.20631 0.99051 0.93343 1.02793 0.85849 0.92393 0.92778 0.85547 0.90865 0.88624 0.74324 0.85542 0.84473 0.92481 0.88240 0.90082 0.91603 0.89186 0.83474 0.82317 0.90834 0.89757 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.33 -7.01 9.54 -92.43 -0.88 -7.89 16 3 C 0.11 2.43 6.66 22.51 0.15 2.58 16 4 C -0.20 -4.87 8.69 22.37 0.19 -4.68 16 5 C -0.07 -1.63 5.27 -19.88 -0.10 -1.74 16 6 C 0.15 3.91 6.25 85.63 0.54 4.44 16 7 N -1.11 -31.91 5.88 -190.79 -1.12 -33.03 16 8 S 2.62 103.66 5.19 -56.49 -0.29 103.37 16 9 O -1.00 -42.95 18.08 -127.65 -2.31 -45.26 16 10 O -0.99 -47.72 17.17 -127.65 -2.19 -49.91 16 11 C -0.55 -21.88 5.93 71.98 0.43 -21.45 16 12 C 0.01 0.52 1.32 -52.93 -0.07 0.45 16 13 C -0.54 -29.62 8.18 25.60 0.21 -29.41 16 14 H 0.05 2.72 7.83 -2.91 -0.02 2.70 16 15 C 0.04 2.44 5.38 84.66 0.46 2.89 16 16 N -0.89 -48.22 12.98 21.45 0.28 -47.94 16 17 Si 0.93 43.69 29.55 68.60 2.03 45.72 16 18 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 20 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 21 C -0.20 -8.42 9.96 30.62 0.30 -8.11 16 22 C -0.14 -6.04 9.49 30.62 0.29 -5.75 16 23 C -0.14 -2.56 9.70 22.28 0.22 -2.35 16 24 C -0.08 -1.39 9.70 22.25 0.22 -1.17 16 25 C -0.12 -2.40 5.89 -19.77 -0.12 -2.52 16 26 C -0.10 -1.47 9.79 71.24 0.70 -0.77 16 27 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.06 0.93 7.67 -2.39 -0.02 0.92 16 29 H 0.05 0.92 7.65 -2.39 -0.02 0.90 16 30 H 0.13 3.08 6.30 -2.91 -0.02 3.07 16 31 H 0.07 2.14 7.64 -2.39 -0.02 2.12 16 32 H 0.10 2.10 8.09 -2.38 -0.02 2.08 16 33 H 0.42 10.38 8.61 -96.75 -0.83 9.55 16 34 H 0.13 5.23 8.14 -2.39 -0.02 5.21 16 35 H 0.14 4.32 8.09 -2.39 -0.02 4.30 16 36 H 0.27 13.73 8.32 -92.71 -0.77 12.96 16 37 H 0.10 3.71 8.14 -2.38 -0.02 3.69 16 38 H 0.08 3.48 8.14 -2.39 -0.02 3.46 16 39 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 40 H 0.09 3.48 8.14 -2.39 -0.02 3.47 16 41 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 42 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 43 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.08 0.87 8.09 -2.39 -0.02 0.85 16 45 H 0.06 0.99 7.53 -2.39 -0.02 0.97 16 Total: -1.00 -71.46 390.66 0.19 -71.27 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: 0.16 Total: 29.83 kcal Atomic # 6 Polarization: -70.67 SS G_CDS: 4.52 Total: -66.15 kcal Atomic # 7 Polarization: -80.13 SS G_CDS: -0.84 Total: -80.97 kcal Atomic # 8 Polarization: -97.68 SS G_CDS: -5.38 Total: -103.06 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: 103.66 SS G_CDS: -0.29 Total: 103.37 kcal Total: -71.46 0.19 -71.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451102549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.624 kcal (2) G-P(sol) polarization free energy of solvation -71.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds