Wall clock time and date at job start Sat Apr 11 2020 05:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35905 * 117.00261 * 2 1 4 4 C 1.38752 * 120.04979 * 0.02562 * 3 2 1 5 5 C 1.38122 * 119.94051 * 180.02562 * 4 3 2 6 6 C 1.50700 * 119.97071 * 180.02562 * 5 4 3 7 7 C 1.38290 * 120.05659 * 359.97311 * 5 4 3 8 8 C 1.38239 * 120.11281 * 0.02562 * 7 5 4 9 9 C 1.50697 * 119.97659 * 179.97438 * 8 7 5 10 10 N 1.46500 * 109.47252 * 89.99780 * 9 8 7 11 11 S 1.65598 * 120.00011 * 165.00416 * 10 9 8 12 12 O 1.42104 * 104.27721 * 308.92614 * 11 10 9 13 13 O 1.42102 * 104.27547 * 181.07217 * 11 10 9 14 14 C 1.81402 * 104.44974 * 65.00162 * 11 10 9 15 15 C 1.53001 * 109.46891 * 186.02560 * 14 11 10 16 16 C 1.50699 * 115.55174 * 299.72056 * 15 14 11 17 17 H 1.07999 * 119.99758 * 95.16501 * 16 15 14 18 18 C 1.37875 * 120.00017 * 275.16466 * 16 15 14 19 19 N 1.31516 * 119.99681 * 7.14031 * 18 16 15 20 20 Si 1.86798 * 120.00198 * 187.13542 * 18 16 15 21 21 H 1.48496 * 109.47369 * 180.02562 * 20 18 16 22 22 H 1.48506 * 109.47205 * 300.00437 * 20 18 16 23 23 H 1.48507 * 109.46959 * 60.00253 * 20 18 16 24 24 C 1.53008 * 117.49594 * 85.39127 * 15 14 11 25 25 C 1.53003 * 117.49760 * 154.04894 * 15 14 11 26 26 C 1.38169 * 120.05511 * 0.27437 * 8 7 5 27 27 H 1.08997 * 109.47505 * 59.99857 * 1 2 3 28 28 H 1.09005 * 109.47294 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47101 * 299.99279 * 1 2 3 30 30 H 1.07998 * 120.02947 * 0.03846 * 4 3 2 31 31 H 1.09003 * 109.47070 * 269.97355 * 6 5 4 32 32 H 1.08991 * 109.47387 * 29.97466 * 6 5 4 33 33 H 1.09006 * 109.47123 * 149.97761 * 6 5 4 34 34 H 1.07997 * 119.94337 * 180.02562 * 7 5 4 35 35 H 1.09005 * 109.46725 * 330.00316 * 9 8 7 36 36 H 1.08996 * 109.47376 * 210.00152 * 9 8 7 37 37 H 0.97001 * 120.00090 * 345.00219 * 10 9 8 38 38 H 1.08999 * 109.47001 * 66.02450 * 14 11 10 39 39 H 1.08995 * 109.46816 * 306.02411 * 14 11 10 40 40 H 0.97000 * 120.00212 * 355.43693 * 19 18 16 41 41 H 1.08998 * 117.49599 * 214.99858 * 24 15 14 42 42 H 1.08992 * 117.49997 * 0.02562 * 24 15 14 43 43 H 1.09005 * 117.49778 * 359.97438 * 25 15 14 44 44 H 1.08996 * 117.49811 * 144.97546 * 25 15 14 45 45 H 1.07996 * 120.02856 * 179.74197 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6047 0.0000 6 6 1.1019 4.8698 0.0012 7 6 3.3019 3.6758 -0.0005 8 6 4.0560 2.5171 -0.0010 9 6 5.5608 2.5981 -0.0022 10 7 6.0495 2.6245 1.3787 11 16 7.6494 2.3390 1.6963 12 8 7.9321 1.1271 1.0103 13 8 7.7453 2.4191 3.1119 14 6 8.5200 3.7282 0.9198 15 6 10.0300 3.5011 1.0153 16 6 10.5833 3.3885 2.4125 17 1 10.7217 2.4161 2.8617 18 6 10.9129 4.5267 3.1173 19 7 10.6156 5.7113 2.6294 20 14 11.7816 4.3864 4.7650 21 1 12.0218 5.7445 5.3153 22 1 10.9333 3.6137 5.7076 23 1 13.0800 3.6891 4.5822 24 6 10.6872 2.6528 -0.0754 25 6 10.9127 4.1665 -0.0426 26 6 3.4311 1.2848 -0.0067 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 0.2128 2.3203 0.0016 31 1 0.9036 5.1752 -1.0262 32 1 0.1578 4.6910 0.5156 33 1 1.6520 5.6583 0.5149 34 1 3.7922 4.6380 -0.0005 35 1 5.8753 3.5064 -0.5163 36 1 5.9710 1.7290 -0.5163 37 1 5.4358 2.8092 2.1069 38 1 8.2584 4.6535 1.4331 39 1 8.2288 3.7992 -0.1282 40 1 10.2246 5.7875 1.7450 41 1 11.5197 2.0132 0.2177 42 1 10.0439 2.2568 -0.8611 43 1 10.4176 4.7656 -0.8069 44 1 11.8934 4.5231 0.2721 45 1 4.0206 0.3800 -0.0114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451350650.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:59 Heat of formation + Delta-G solvation = -96.922377 kcal Electronic energy + Delta-G solvation = -27247.441463 eV Core-core repulsion = 23356.788927 eV Total energy + Delta-G solvation = -3890.652535 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.24277 -38.96163 -38.88142 -38.01532 -36.88135 -36.37407 -34.04512 -33.42698 -31.30359 -29.97580 -28.75415 -27.58384 -27.04985 -26.56784 -23.14068 -22.79178 -21.94444 -21.70794 -20.35716 -18.80440 -18.77287 -18.33145 -17.43338 -17.32292 -17.06263 -16.93706 -16.67144 -15.91128 -15.77207 -15.63042 -15.19733 -14.94685 -14.71336 -14.54180 -14.39516 -14.18903 -13.96547 -13.64899 -13.38104 -13.11554 -13.04538 -13.00342 -12.97763 -12.91499 -12.76348 -12.67672 -12.35842 -12.28919 -12.10139 -11.94046 -11.80878 -11.76136 -11.49775 -10.62837 -10.57976 -10.52640 -10.10276 -9.77071 -9.17539 -8.61924 -6.39794 -0.63397 0.22919 0.41754 1.52059 1.59054 1.78135 1.98896 2.33211 2.54069 2.71923 2.89564 3.12557 3.17462 3.37574 3.56806 3.74746 3.83982 4.05735 4.10429 4.14308 4.28021 4.33939 4.34577 4.37753 4.38284 4.40460 4.46237 4.57845 4.62863 4.71038 4.81829 4.82268 4.84027 4.84877 4.92280 5.02876 5.23713 5.26027 5.26606 5.43575 5.50213 5.59878 5.77954 6.01397 6.03132 6.16206 6.42735 6.65395 7.42674 8.80481 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018507 B = 0.002735 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.563616 B =10234.088338 C =10427.036760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.339 6.339 3 C 0.116 3.884 4 C -0.204 4.204 5 C -0.052 4.052 6 C -0.114 4.114 7 C -0.148 4.148 8 C -0.057 4.057 9 C 0.147 3.853 10 N -1.114 6.114 11 S 2.630 3.370 12 O -0.993 6.993 13 O -0.994 6.994 14 C -0.561 4.561 15 C -0.015 4.015 16 C -0.608 4.608 17 H 0.038 0.962 18 C -0.001 4.001 19 N -0.916 5.916 20 Si 1.091 2.909 21 H -0.274 1.274 22 H -0.281 1.281 23 H -0.268 1.268 24 C -0.180 4.180 25 C -0.156 4.156 26 C -0.163 4.163 27 H 0.068 0.932 28 H 0.116 0.884 29 H 0.064 0.936 30 H 0.151 0.849 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.143 0.857 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.420 0.580 38 H 0.120 0.880 39 H 0.144 0.856 40 H 0.273 0.727 41 H 0.080 0.920 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.067 0.933 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.962 -2.460 -9.791 25.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.253 6.253 3 C 0.071 3.929 4 C -0.222 4.222 5 C -0.052 4.052 6 C -0.171 4.171 7 C -0.166 4.166 8 C -0.059 4.059 9 C 0.022 3.978 10 N -0.874 5.874 11 S 2.727 3.273 12 O -0.983 6.983 13 O -0.984 6.984 14 C -0.694 4.694 15 C -0.017 4.017 16 C -0.645 4.645 17 H 0.057 0.943 18 C -0.204 4.204 19 N -0.551 5.551 20 Si 0.914 3.086 21 H -0.199 1.199 22 H -0.207 1.207 23 H -0.193 1.193 24 C -0.218 4.218 25 C -0.195 4.195 26 C -0.183 4.183 27 H 0.086 0.914 28 H 0.134 0.866 29 H 0.083 0.917 30 H 0.169 0.831 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.160 0.840 35 H 0.120 0.880 36 H 0.104 0.896 37 H 0.255 0.745 38 H 0.139 0.861 39 H 0.162 0.838 40 H 0.083 0.917 41 H 0.099 0.901 42 H 0.123 0.877 43 H 0.118 0.882 44 H 0.086 0.914 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -21.869 -2.567 -8.182 23.490 hybrid contribution -0.756 -0.360 -1.140 1.414 sum -22.625 -2.926 -9.322 24.644 Atomic orbital electron populations 1.23347 0.76331 1.05538 1.02354 1.86065 1.23623 1.26939 1.88721 1.19107 0.92122 0.85019 0.96655 1.21393 1.01034 0.91240 1.08566 1.20051 0.93802 0.95702 0.95643 1.20877 0.99417 0.93204 1.03555 1.21161 0.93610 0.98318 1.03553 1.19503 0.94318 0.92757 0.99309 1.20451 0.91183 1.04179 0.81954 1.55589 1.26874 1.90271 1.14684 1.04148 0.73105 0.76388 0.73699 1.93460 1.84633 1.43523 1.76677 1.93496 1.85552 1.87942 1.31387 1.29957 1.07933 1.18450 1.13058 1.18647 0.87588 1.03944 0.91511 1.21608 1.48344 0.94908 0.99650 0.94337 1.26818 0.95053 0.92028 1.06517 1.70841 1.40250 1.24929 1.19081 0.83281 0.76362 0.76486 0.72470 1.19925 1.20742 1.19330 1.23125 1.03661 0.93510 1.01461 1.22766 1.00749 0.94587 1.01366 1.20466 0.92209 0.98462 1.07135 0.91358 0.86570 0.91718 0.83121 0.89656 0.90312 0.90630 0.83954 0.88048 0.89607 0.74455 0.86125 0.83788 0.91670 0.90122 0.87682 0.88197 0.91434 0.85982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.32 16 2 O -0.34 -7.11 10.50 -92.48 -0.97 -8.08 16 3 C 0.12 2.56 6.69 22.51 0.15 2.71 16 4 C -0.20 -3.50 8.69 22.37 0.19 -3.31 16 5 C -0.05 -0.86 5.88 -19.88 -0.12 -0.98 16 6 C -0.11 -1.20 10.01 71.24 0.71 -0.49 16 7 C -0.15 -2.81 9.35 22.28 0.21 -2.60 16 8 C -0.06 -1.29 5.27 -19.88 -0.10 -1.39 16 9 C 0.15 3.50 6.26 85.63 0.54 4.04 16 10 N -1.11 -32.87 5.88 -190.79 -1.12 -33.99 16 11 S 2.63 106.70 5.10 -56.49 -0.29 106.42 16 12 O -0.99 -43.88 17.50 -127.65 -2.23 -46.11 16 13 O -0.99 -49.75 17.57 -127.65 -2.24 -51.99 16 14 C -0.56 -22.16 5.87 71.98 0.42 -21.73 16 15 C -0.01 -0.70 0.95 -52.92 -0.05 -0.75 16 16 C -0.61 -34.30 7.88 25.60 0.20 -34.10 16 17 H 0.04 2.28 7.82 -2.91 -0.02 2.26 16 18 C 0.00 -0.07 5.39 84.65 0.46 0.38 16 19 N -0.92 -52.81 13.57 21.45 0.29 -52.52 16 20 Si 1.09 51.63 29.91 68.60 2.05 53.68 16 21 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 22 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 C -0.18 -7.55 9.95 30.62 0.30 -7.25 16 25 C -0.16 -6.67 8.74 30.62 0.27 -6.40 16 26 C -0.16 -4.01 9.64 22.37 0.22 -3.80 16 27 H 0.07 0.56 7.66 -2.39 -0.02 0.54 16 28 H 0.12 0.84 8.14 -2.38 -0.02 0.82 16 29 H 0.06 0.58 7.66 -2.38 -0.02 0.56 16 30 H 0.15 1.75 6.30 -2.91 -0.02 1.73 16 31 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.08 0.64 8.08 -2.39 -0.02 0.62 16 33 H 0.07 0.76 8.09 -2.38 -0.02 0.74 16 34 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 35 H 0.10 1.83 8.09 -2.38 -0.02 1.81 16 36 H 0.09 2.10 7.63 -2.39 -0.02 2.08 16 37 H 0.42 11.48 8.61 -96.75 -0.83 10.65 16 38 H 0.12 4.95 7.79 -2.39 -0.02 4.93 16 39 H 0.14 4.27 8.11 -2.39 -0.02 4.25 16 40 H 0.27 15.17 6.17 -92.71 -0.57 14.60 16 41 H 0.08 3.47 8.14 -2.39 -0.02 3.45 16 42 H 0.10 3.75 8.14 -2.39 -0.02 3.74 16 43 H 0.10 3.63 8.14 -2.38 -0.02 3.61 16 44 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 45 H 0.12 3.16 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -77.22 388.70 0.36 -76.87 By element: Atomic # 1 Polarization: 29.72 SS G_CDS: 0.36 Total: 30.08 kcal Atomic # 6 Polarization: -78.86 SS G_CDS: 4.51 Total: -74.35 kcal Atomic # 7 Polarization: -85.68 SS G_CDS: -0.83 Total: -86.51 kcal Atomic # 8 Polarization: -100.74 SS G_CDS: -5.45 Total: -106.18 kcal Atomic # 14 Polarization: 51.63 SS G_CDS: 2.05 Total: 53.68 kcal Atomic # 16 Polarization: 106.70 SS G_CDS: -0.29 Total: 106.42 kcal Total: -77.22 0.36 -76.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451350650.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.056 kcal (2) G-P(sol) polarization free energy of solvation -77.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds