Wall clock time and date at job start Sat Apr 11 2020 05:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00312 * 2 1 4 4 C 1.52992 * 109.47415 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47204 * 305.00329 * 4 3 2 6 6 O 1.42898 * 109.47322 * 65.00415 * 4 3 2 7 7 C 1.52995 * 109.47350 * 185.00281 * 4 3 2 8 8 C 1.53000 * 109.47569 * 179.97438 * 7 4 3 9 9 N 1.46503 * 109.47128 * 180.02562 * 8 7 4 10 10 C 1.34782 * 119.99675 * 179.97438 * 9 8 7 11 11 O 1.21554 * 120.00078 * 0.02562 * 10 9 8 12 12 C 1.47860 * 120.00051 * 179.97438 * 10 9 8 13 13 C 1.39674 * 120.09902 * 359.72797 * 12 10 9 14 14 C 1.38038 * 120.04043 * 179.74271 * 13 12 10 15 15 C 1.38181 * 120.23854 * 0.55516 * 14 13 12 16 16 C 1.39179 * 120.20322 * 359.69636 * 15 14 13 17 17 S 1.76203 * 120.01929 * 180.02562 * 16 15 14 18 18 C 1.76198 * 100.00075 * 265.52723 * 17 16 15 19 19 H 1.08000 * 119.99796 * 5.11947 * 18 17 16 20 20 C 1.38728 * 119.99993 * 185.12068 * 18 17 16 21 21 N 1.31625 * 120.00127 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99943 * 180.02562 * 20 18 17 23 23 H 1.48510 * 109.47304 * 90.00032 * 22 20 18 24 24 H 1.48498 * 109.47333 * 209.99857 * 22 20 18 25 25 H 1.48499 * 109.47352 * 330.00100 * 22 20 18 26 26 C 1.38873 * 119.95859 * 0.02562 * 16 15 14 27 27 H 1.09000 * 109.46948 * 299.99482 * 1 2 3 28 28 H 1.08999 * 109.47301 * 59.99716 * 1 2 3 29 29 H 1.09000 * 109.46853 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46655 * 60.00017 * 3 2 1 31 31 H 1.09003 * 109.47043 * 300.00652 * 3 2 1 32 32 H 1.09009 * 109.47053 * 299.99911 * 5 4 3 33 33 H 1.08997 * 109.47155 * 59.99771 * 5 4 3 34 34 H 1.09003 * 109.47518 * 180.02562 * 5 4 3 35 35 H 0.96700 * 113.99786 * 59.99575 * 6 4 3 36 36 H 1.09009 * 109.47336 * 59.99502 * 7 4 3 37 37 H 1.09002 * 109.47271 * 300.00097 * 7 4 3 38 38 H 1.09002 * 109.46904 * 300.00323 * 8 7 4 39 39 H 1.08999 * 109.46934 * 59.99887 * 8 7 4 40 40 H 0.96995 * 120.00451 * 359.97438 * 9 8 7 41 41 H 1.08008 * 119.97899 * 359.97438 * 13 12 10 42 42 H 1.07997 * 119.88570 * 180.25280 * 14 13 12 43 43 H 1.08004 * 119.89948 * 179.72048 * 15 14 13 44 44 H 0.97001 * 119.99609 * 180.02562 * 21 20 18 45 45 H 1.08001 * 120.12193 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9790 0.3193 1.1806 6 8 3.9649 0.5797 -1.2220 7 6 4.1574 2.5768 0.1251 8 6 5.6826 2.4559 0.1251 9 7 6.2781 3.7890 0.2462 10 6 7.6185 3.9288 0.2683 11 8 8.3332 2.9490 0.1873 12 6 8.2196 5.2743 0.3899 13 6 7.4003 6.4022 0.4763 14 6 7.9627 7.6573 0.5952 15 6 9.3364 7.8050 0.6177 16 6 10.1623 6.6884 0.5270 17 16 11.9133 6.8823 0.5569 18 6 12.2453 6.9314 -1.1728 19 1 11.4287 6.9299 -1.8796 20 6 13.5556 6.9720 -1.6267 21 7 14.5508 6.9733 -0.7653 22 14 13.9075 7.0248 -3.4605 23 1 13.9693 8.4382 -3.9123 24 1 15.2070 6.3604 -3.7346 25 1 12.8261 6.3180 -4.1927 26 6 9.6053 5.4213 0.4130 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6887 1.8463 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.6515 0.7807 2.1123 33 1 3.5359 -0.6725 1.0910 34 1 5.0657 0.2335 1.1804 35 1 3.7175 1.0754 -2.0146 36 1 3.8298 3.0383 1.0568 37 1 3.8414 3.1933 -0.7164 38 1 5.9983 1.8395 0.9669 39 1 6.0105 1.9943 -0.8062 40 1 5.7078 4.5710 0.3105 41 1 6.3261 6.2921 0.4539 42 1 7.3269 8.5273 0.6659 43 1 9.7706 8.7899 0.7063 44 1 15.4670 7.0021 -1.0828 45 1 10.2437 4.5530 0.3429 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452340817.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:03 Heat of formation + Delta-G solvation = -116.942980 kcal Electronic energy + Delta-G solvation = -25852.651778 eV Core-core repulsion = 21961.131084 eV Total energy + Delta-G solvation = -3891.520694 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.10903 -39.43842 -37.88688 -37.29114 -35.09519 -32.87238 -32.50280 -31.07928 -30.55248 -29.04757 -27.84527 -26.38021 -25.56621 -24.20064 -22.83383 -22.05181 -20.89112 -20.29856 -18.40011 -17.52402 -17.07724 -16.79311 -16.55419 -16.31599 -15.78430 -15.67518 -15.25678 -14.91612 -14.84008 -14.74920 -14.28220 -13.89938 -13.78637 -13.49498 -13.32555 -12.94275 -12.69480 -12.66428 -12.54637 -12.30622 -12.11239 -11.83809 -11.63964 -11.61978 -11.15501 -11.13568 -11.07987 -11.02169 -10.70619 -10.43362 -10.18774 -9.97013 -9.76178 -9.17100 -9.15385 -9.00658 -8.59078 -8.03493 -6.70968 -6.28169 -4.02192 1.15916 1.65724 2.89067 3.04872 3.20169 3.23331 3.28389 3.33198 3.48086 3.85982 4.08907 4.20723 4.26431 4.34103 4.50702 4.66670 4.70284 4.80030 4.86513 4.90704 4.91596 5.06582 5.08745 5.12918 5.19058 5.22461 5.23242 5.47772 5.50198 5.56827 5.65609 5.70435 5.80076 5.86883 5.97839 6.01189 6.24221 6.33996 6.57893 6.61709 6.62289 6.92723 7.18260 7.29211 7.47413 7.57984 8.29401 8.33071 9.17674 10.78549 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020156 B = 0.001925 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.801954 B =14543.822415 C =15143.808394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.377 6.377 3 C 0.036 3.964 4 C 0.140 3.860 5 C -0.142 4.142 6 O -0.545 6.545 7 C -0.158 4.158 8 C 0.124 3.876 9 N -0.735 5.735 10 C 0.563 3.437 11 O -0.532 6.532 12 C -0.154 4.154 13 C -0.091 4.091 14 C -0.141 4.141 15 C -0.055 4.055 16 C -0.107 4.107 17 S -0.034 6.034 18 C -0.520 4.520 19 H 0.076 0.924 20 C 0.073 3.927 21 N -0.870 5.870 22 Si 0.921 3.079 23 H -0.276 1.276 24 H -0.281 1.281 25 H -0.271 1.271 26 C -0.019 4.019 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.087 0.913 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.375 0.625 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.397 0.603 41 H 0.116 0.884 42 H 0.123 0.877 43 H 0.131 0.869 44 H 0.270 0.730 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.889 -6.417 2.856 29.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.296 6.296 3 C -0.041 4.041 4 C 0.099 3.901 5 C -0.199 4.199 6 O -0.351 6.351 7 C -0.196 4.196 8 C 0.001 3.999 9 N -0.388 5.388 10 C 0.351 3.649 11 O -0.408 6.408 12 C -0.159 4.159 13 C -0.110 4.110 14 C -0.161 4.161 15 C -0.077 4.077 16 C -0.217 4.217 17 S 0.200 5.800 18 C -0.668 4.668 19 H 0.094 0.906 20 C -0.136 4.136 21 N -0.505 5.505 22 Si 0.747 3.253 23 H -0.202 1.202 24 H -0.206 1.206 25 H -0.196 1.196 26 C -0.040 4.040 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.222 0.778 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.232 0.768 41 H 0.134 0.866 42 H 0.141 0.859 43 H 0.149 0.851 44 H 0.080 0.920 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -27.022 -7.688 4.128 28.396 hybrid contribution -1.567 1.110 -2.512 3.162 sum -28.589 -6.577 1.616 29.380 Atomic orbital electron populations 1.22779 0.81120 1.02956 0.99873 1.87964 1.19417 1.26872 1.95319 1.23262 0.94469 0.85534 1.00824 1.21107 0.89967 0.91929 0.87119 1.21754 1.02596 1.00744 0.94774 1.86658 1.80815 1.52686 1.14907 1.22428 0.96017 0.97402 1.03736 1.21262 0.90888 0.84361 1.03437 1.45900 1.06850 1.09416 1.76663 1.18406 0.81630 0.89115 0.75750 1.90788 1.60936 1.40161 1.48948 1.19867 0.94754 0.92140 1.09157 1.21118 0.98309 0.92419 0.99140 1.21053 0.95273 0.96772 1.03027 1.21963 0.92762 0.98966 0.93962 1.22865 1.03632 0.93892 1.01341 1.83604 0.89889 1.94501 1.12007 1.22840 0.95013 1.58722 0.90197 0.90610 1.25002 0.95014 0.94351 0.99205 1.69987 0.99389 1.46910 1.34208 0.86120 0.77996 0.78431 0.82774 1.20178 1.20628 1.19559 1.21963 0.92794 0.97966 0.91303 0.94104 0.94137 0.89452 0.92368 0.93020 0.91282 0.90771 0.91173 0.77823 0.89979 0.90668 0.90908 0.90550 0.76774 0.86604 0.85883 0.85064 0.92049 0.84282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.38 -3.08 9.79 -40.08 -0.39 -3.47 16 3 C 0.04 0.22 5.06 37.15 0.19 0.41 16 4 C 0.14 1.01 0.88 -90.63 -0.08 0.93 16 5 C -0.14 -1.15 8.29 37.16 0.31 -0.84 16 6 O -0.55 -4.80 12.27 -40.08 -0.49 -5.29 16 7 C -0.16 -0.96 4.57 -26.73 -0.12 -1.08 16 8 C 0.12 1.24 5.18 -4.04 -0.02 1.22 16 9 N -0.73 -8.20 5.51 -61.24 -0.34 -8.54 16 10 C 0.56 9.13 7.77 -12.32 -0.10 9.03 16 11 O -0.53 -10.78 16.34 5.32 0.09 -10.69 16 12 C -0.15 -2.59 5.87 -105.00 -0.62 -3.21 16 13 C -0.09 -1.21 9.54 -39.12 -0.37 -1.59 16 14 C -0.14 -1.99 10.02 -39.68 -0.40 -2.39 16 15 C -0.06 -0.99 9.79 -39.25 -0.38 -1.37 16 16 C -0.11 -2.28 5.45 -39.00 -0.21 -2.50 16 17 S -0.03 -0.89 21.41 -107.50 -2.30 -3.20 16 18 C -0.52 -14.76 9.46 30.91 0.29 -14.47 16 19 H 0.08 2.13 7.79 -52.49 -0.41 1.72 16 20 C 0.07 2.07 5.49 -17.46 -0.10 1.97 16 21 N -0.87 -25.52 13.22 55.49 0.73 -24.79 16 22 Si 0.92 21.58 29.55 -169.99 -5.02 16.55 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 26 C -0.02 -0.38 9.34 -38.92 -0.36 -0.74 16 27 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 28 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.45 8.14 -51.92 -0.42 0.02 16 33 H 0.07 0.68 7.56 -51.93 -0.39 0.29 16 34 H 0.07 0.64 6.43 -51.93 -0.33 0.30 16 35 H 0.37 1.99 9.05 45.56 0.41 2.40 16 36 H 0.08 0.40 8.14 -51.92 -0.42 -0.03 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.81 6.43 -51.93 -0.33 0.47 16 39 H 0.08 0.90 7.68 -51.93 -0.40 0.50 16 40 H 0.40 3.20 6.50 -40.82 -0.27 2.93 16 41 H 0.12 1.05 6.40 -52.48 -0.34 0.71 16 42 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 43 H 0.13 2.21 8.06 -52.48 -0.42 1.79 16 44 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 45 H 0.14 3.10 7.65 -52.49 -0.40 2.70 16 LS Contribution 392.18 15.07 5.91 5.91 Total: -1.00 -35.44 392.18 -8.50 -43.94 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -5.82 Total: 2.96 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: -0.86 Total: -13.37 kcal Atomic # 7 Polarization: -33.73 SS G_CDS: 0.40 Total: -33.33 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.80 Total: -19.46 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -0.89 SS G_CDS: -2.30 Total: -3.20 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.44 -8.50 -43.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452340817.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.006 kcal (2) G-P(sol) polarization free energy of solvation -35.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds