Wall clock time and date at job start Sat Apr 11 2020 05:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50697 * 120.00167 * 2 1 4 4 N 1.46507 * 109.47136 * 124.99564 * 3 2 1 5 5 C 1.46500 * 120.00121 * 279.47877 * 4 3 2 6 6 C 1.50706 * 109.46895 * 274.99976 * 5 4 3 7 7 H 1.07998 * 120.00200 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99724 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00320 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00101 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47298 * 89.99950 * 10 8 6 12 12 H 1.48494 * 109.47367 * 209.99948 * 10 8 6 13 13 H 1.48504 * 109.46967 * 329.99795 * 10 8 6 14 14 S 1.65593 * 119.99883 * 99.47859 * 4 3 2 15 15 O 1.42103 * 106.40354 * 342.75923 * 14 4 3 16 16 O 1.42095 * 106.40503 * 209.83980 * 14 4 3 17 17 C 1.76202 * 107.22152 * 96.29997 * 14 4 3 18 18 C 1.38268 * 119.94510 * 270.01902 * 17 14 4 19 19 C 1.50699 * 119.97193 * 359.97438 * 18 17 14 20 20 C 1.38136 * 120.05843 * 180.02562 * 18 17 14 21 21 C 1.38737 * 119.94422 * 359.97438 * 20 18 17 22 22 O 1.35899 * 120.05665 * 179.97438 * 21 20 18 23 23 C 1.42904 * 117.00127 * 179.97438 * 22 21 20 24 24 C 1.38729 * 119.88537 * 359.97438 * 21 20 18 25 25 C 1.38146 * 119.94813 * 0.04217 * 24 21 20 26 26 C 1.50693 * 119.97339 * 179.97438 * 25 24 21 27 27 H 1.08008 * 120.00077 * 0.02562 * 1 2 3 28 28 H 1.08006 * 120.00247 * 179.97438 * 1 2 3 29 29 H 1.07998 * 120.00008 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.46977 * 4.99910 * 3 2 1 31 31 H 1.08994 * 109.47341 * 244.99923 * 3 2 1 32 32 H 1.08997 * 109.47236 * 34.99687 * 5 4 3 33 33 H 1.08999 * 109.47312 * 154.99948 * 5 4 3 34 34 H 0.97008 * 120.00254 * 180.02562 * 9 8 6 35 35 H 1.09005 * 109.47349 * 276.77514 * 19 18 17 36 36 H 1.09006 * 109.47360 * 36.76796 * 19 18 17 37 37 H 1.08997 * 109.47495 * 156.77261 * 19 18 17 38 38 H 1.08004 * 120.03073 * 179.72505 * 20 18 17 39 39 H 1.08991 * 109.47165 * 179.97438 * 23 22 21 40 40 H 1.08999 * 109.47177 * 300.00242 * 23 22 21 41 41 H 1.09003 * 109.46931 * 59.99312 * 23 22 21 42 42 H 1.08003 * 120.02629 * 180.02562 * 24 21 20 43 43 H 1.09007 * 109.47546 * 263.67998 * 26 25 24 44 44 H 1.09002 * 109.47377 * 23.68267 * 26 25 24 45 45 H 1.08999 * 109.47228 * 143.68354 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5071 1.6673 2.4720 6 6 2.4874 3.1649 2.6391 7 1 2.8059 3.8030 1.8280 8 6 2.0638 3.7204 3.8277 9 7 1.6774 2.9434 4.8159 10 14 2.0387 5.5768 4.0346 11 1 0.7191 6.1050 3.6046 12 1 2.2677 5.9190 5.4613 13 1 3.1093 6.1821 3.2024 14 16 4.5951 0.9830 0.8953 15 8 4.6809 0.3219 -0.3597 16 8 5.0646 0.4113 2.1085 17 6 5.4412 2.5173 0.7082 18 6 5.5883 3.0756 -0.5482 19 6 5.0256 2.3711 -1.7557 20 6 6.2516 4.2780 -0.6976 21 6 6.7699 4.9258 0.4143 22 8 7.4234 6.1086 0.2699 23 6 7.9302 6.7192 1.4584 24 6 6.6200 4.3641 1.6739 25 6 5.9562 3.1612 1.8180 26 6 5.7935 2.5502 3.1859 27 1 -0.5401 0.9354 -0.0004 28 1 -0.5401 -0.9353 -0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6212 1.4026 -0.9313 32 1 1.4989 1.2740 2.6016 33 1 3.1676 1.2270 3.2191 34 1 1.3790 3.3343 5.6521 35 1 5.7304 1.6118 -2.0947 36 1 4.0801 1.8970 -1.4920 37 1 4.8592 3.0946 -2.5538 38 1 6.3702 4.7115 -1.6797 39 1 8.4283 7.6543 1.2024 40 1 7.1062 6.9214 2.1427 41 1 8.6429 6.0472 1.9366 42 1 7.0223 4.8666 2.5412 43 1 6.5807 1.8145 3.3513 44 1 5.8613 3.3313 3.9432 45 1 4.8209 2.0628 3.2528 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000520311658.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:47 Heat of formation + Delta-G solvation = -57.916321 kcal Electronic energy + Delta-G solvation = -29397.790136 eV Core-core repulsion = 25508.829030 eV Total energy + Delta-G solvation = -3888.961106 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.13728 -37.77057 -37.00680 -36.38350 -35.22794 -33.30507 -33.08277 -31.90420 -31.06951 -27.88839 -27.50097 -27.10539 -26.03548 -24.90718 -22.38375 -22.06729 -20.64061 -19.67779 -18.39354 -17.49220 -17.08206 -16.81475 -16.60023 -16.30933 -15.78505 -15.57149 -14.56529 -14.49398 -14.02196 -13.95282 -13.66927 -13.54475 -13.12292 -13.06309 -12.83086 -12.71186 -12.47383 -12.40547 -12.21398 -12.06118 -11.91596 -11.77192 -11.53564 -11.26432 -11.17911 -10.90410 -10.81133 -10.77479 -10.74278 -10.50640 -10.37527 -10.02721 -9.98019 -9.81649 -9.03271 -8.53444 -8.43401 -8.32536 -8.05364 -6.14068 -4.19774 1.02592 1.31910 1.57071 2.65250 3.19505 3.21016 3.28856 3.31859 3.57931 3.88389 4.34427 4.39545 4.77300 4.91942 4.96892 5.08145 5.14054 5.20309 5.24022 5.29922 5.36427 5.40462 5.46834 5.57501 5.68905 5.79557 5.87729 6.01052 6.05362 6.11617 6.18645 6.30735 6.32749 6.40139 6.47611 6.57927 6.66234 6.89305 6.97650 6.98999 7.07602 7.35685 7.40230 7.44511 7.58128 7.83991 8.11495 8.86020 9.46475 10.93569 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008986 B = 0.006751 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3115.153443 B = 4146.244921 C = 5967.739368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.160 4.160 3 C 0.150 3.850 4 N -0.980 5.980 5 C 0.243 3.757 6 C -0.536 4.536 7 H 0.062 0.938 8 C 0.069 3.931 9 N -0.888 5.888 10 Si 0.885 3.115 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.273 1.273 14 S 2.692 3.308 15 O -0.978 6.978 16 O -0.961 6.961 17 C -0.708 4.708 18 C 0.056 3.944 19 C -0.137 4.137 20 C -0.192 4.192 21 C 0.180 3.820 22 O -0.317 6.317 23 C 0.025 3.975 24 C -0.244 4.244 25 C 0.092 3.908 26 C -0.145 4.145 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.043 0.957 33 H 0.052 0.948 34 H 0.264 0.736 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.132 0.868 39 H 0.099 0.901 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.131 0.869 43 H 0.084 0.916 44 H 0.066 0.934 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.049 2.011 -8.661 11.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.180 4.180 3 C 0.025 3.975 4 N -0.818 5.818 5 C 0.121 3.879 6 C -0.576 4.576 7 H 0.080 0.920 8 C -0.134 4.134 9 N -0.526 5.526 10 Si 0.713 3.287 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.198 1.198 14 S 2.784 3.216 15 O -0.969 6.969 16 O -0.951 6.951 17 C -0.795 4.795 18 C 0.054 3.946 19 C -0.193 4.193 20 C -0.211 4.211 21 C 0.134 3.866 22 O -0.230 6.230 23 C -0.070 4.070 24 C -0.263 4.263 25 C 0.090 3.910 26 C -0.201 4.201 27 H 0.116 0.884 28 H 0.111 0.889 29 H 0.124 0.876 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.150 0.850 39 H 0.117 0.883 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.149 0.851 43 H 0.102 0.898 44 H 0.085 0.915 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 7.407 1.328 -8.638 11.456 hybrid contribution 0.015 2.166 0.611 2.250 sum 7.422 3.494 -8.027 11.477 Atomic orbital electron populations 1.23775 0.95794 1.01599 1.01200 1.23378 0.96310 0.99116 0.99153 1.20361 0.93202 0.95631 0.88338 1.57407 1.22630 1.85318 1.16415 1.19297 0.97090 0.95780 0.75687 1.21536 1.44723 0.91842 0.99465 0.91953 1.24869 0.95071 0.97750 0.95739 1.69929 1.43446 1.34833 1.04407 0.86696 0.78611 0.86068 0.77361 1.20566 1.21102 1.19823 1.01765 0.72930 0.74085 0.72865 1.93517 1.86652 1.73195 1.43504 1.93560 1.80126 1.75912 1.45534 1.30580 1.22943 1.27499 0.98504 1.19304 0.90230 0.91808 0.93216 1.21389 1.03030 1.00171 0.94695 1.20195 1.06342 0.97186 0.97380 1.19172 0.89242 0.84115 0.94079 1.86045 1.68908 1.33467 1.34555 1.23101 0.98938 0.97978 0.87024 1.21162 1.09354 0.99572 0.96207 1.19399 0.86178 0.90787 0.94598 1.21499 1.06571 1.00896 0.91162 0.88376 0.88871 0.87628 0.89625 0.90031 0.93853 0.93001 0.92600 0.88866 0.89523 0.91247 0.85006 0.88259 0.92221 0.92401 0.85102 0.89773 0.91516 0.86703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.64 14.32 29.02 0.42 -2.23 16 2 C -0.16 -2.55 9.80 -36.03 -0.35 -2.90 16 3 C 0.15 2.59 5.88 -5.19 -0.03 2.55 16 4 N -0.98 -19.76 2.76 -116.94 -0.32 -20.08 16 5 C 0.24 5.77 4.79 -5.19 -0.02 5.74 16 6 C -0.54 -13.51 8.73 -34.44 -0.30 -13.81 16 7 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 8 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 9 N -0.89 -24.36 13.29 55.43 0.74 -23.63 16 10 Si 0.88 20.44 29.54 -169.99 -5.02 15.42 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 14 S 2.69 53.50 4.93 -107.50 -0.53 52.97 16 15 O -0.98 -18.82 13.30 -57.17 -0.76 -19.58 16 16 O -0.96 -21.14 13.22 -57.17 -0.76 -21.90 16 17 C -0.71 -13.53 5.97 -39.56 -0.24 -13.77 16 18 C 0.06 0.95 5.87 -104.65 -0.61 0.34 16 19 C -0.14 -1.98 8.32 36.01 0.30 -1.68 16 20 C -0.19 -3.07 9.61 -39.43 -0.38 -3.45 16 21 C 0.18 2.95 6.69 -39.22 -0.26 2.68 16 22 O -0.32 -4.55 10.50 -19.42 -0.20 -4.76 16 23 C 0.02 0.26 9.81 101.05 0.99 1.25 16 24 C -0.24 -4.16 8.66 -39.43 -0.34 -4.51 16 25 C 0.09 1.76 5.87 -104.65 -0.61 1.15 16 26 C -0.15 -2.84 8.33 36.00 0.30 -2.54 16 27 H 0.10 1.35 7.84 -52.48 -0.41 0.94 16 28 H 0.09 1.15 8.06 -52.48 -0.42 0.73 16 29 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 30 H 0.09 1.46 7.79 -51.93 -0.40 1.06 16 31 H 0.08 1.25 4.83 -51.93 -0.25 1.00 16 32 H 0.04 1.08 8.11 -51.93 -0.42 0.66 16 33 H 0.05 1.33 5.73 -51.93 -0.30 1.03 16 34 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.09 1.30 7.82 -51.93 -0.41 0.89 16 36 H 0.09 1.31 3.50 -51.93 -0.18 1.12 16 37 H 0.07 0.81 8.04 -51.93 -0.42 0.39 16 38 H 0.13 1.77 8.06 -52.48 -0.42 1.35 16 39 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.64 7.66 -51.93 -0.40 0.24 16 41 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 42 H 0.13 1.91 6.30 -52.48 -0.33 1.58 16 43 H 0.08 1.52 7.84 -51.93 -0.41 1.11 16 44 H 0.07 1.20 8.04 -51.93 -0.42 0.78 16 45 H 0.11 2.57 3.11 -51.93 -0.16 2.41 16 LS Contribution 369.69 15.07 5.57 5.57 Total: -1.00 -30.08 369.69 -8.67 -38.75 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -6.14 Total: 6.68 kcal Atomic # 6 Polarization: -28.21 SS G_CDS: -1.25 Total: -29.46 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: 0.41 Total: -43.71 kcal Atomic # 8 Polarization: -44.51 SS G_CDS: -1.72 Total: -46.23 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 53.50 SS G_CDS: -0.53 Total: 52.97 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.08 -8.67 -38.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520311658.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.163 kcal (2) G-P(sol) polarization free energy of solvation -30.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds