Wall clock time and date at job start Sat Apr 11 2020 05:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50697 * 120.00167 * 2 1 4 4 N 1.46507 * 109.47136 * 124.99564 * 3 2 1 5 5 C 1.46500 * 120.00121 * 279.47877 * 4 3 2 6 6 C 1.50706 * 109.46895 * 274.99976 * 5 4 3 7 7 H 1.07998 * 120.00200 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99724 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00320 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00101 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47298 * 89.99950 * 10 8 6 12 12 H 1.48494 * 109.47367 * 209.99948 * 10 8 6 13 13 H 1.48504 * 109.46967 * 329.99795 * 10 8 6 14 14 S 1.65593 * 119.99883 * 99.47859 * 4 3 2 15 15 O 1.42103 * 106.40354 * 342.75923 * 14 4 3 16 16 O 1.42095 * 106.40503 * 209.83980 * 14 4 3 17 17 C 1.76202 * 107.22152 * 96.29997 * 14 4 3 18 18 C 1.38268 * 119.94510 * 270.01902 * 17 14 4 19 19 C 1.50699 * 119.97193 * 359.97438 * 18 17 14 20 20 C 1.38136 * 120.05843 * 180.02562 * 18 17 14 21 21 C 1.38737 * 119.94422 * 359.97438 * 20 18 17 22 22 O 1.35899 * 120.05665 * 179.97438 * 21 20 18 23 23 C 1.42904 * 117.00127 * 179.97438 * 22 21 20 24 24 C 1.38729 * 119.88537 * 359.97438 * 21 20 18 25 25 C 1.38146 * 119.94813 * 0.04217 * 24 21 20 26 26 C 1.50693 * 119.97339 * 179.97438 * 25 24 21 27 27 H 1.08008 * 120.00077 * 0.02562 * 1 2 3 28 28 H 1.08006 * 120.00247 * 179.97438 * 1 2 3 29 29 H 1.07998 * 120.00008 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.46977 * 4.99910 * 3 2 1 31 31 H 1.08994 * 109.47341 * 244.99923 * 3 2 1 32 32 H 1.08997 * 109.47236 * 34.99687 * 5 4 3 33 33 H 1.08999 * 109.47312 * 154.99948 * 5 4 3 34 34 H 0.97008 * 120.00254 * 180.02562 * 9 8 6 35 35 H 1.09005 * 109.47349 * 276.77514 * 19 18 17 36 36 H 1.09006 * 109.47360 * 36.76796 * 19 18 17 37 37 H 1.08997 * 109.47495 * 156.77261 * 19 18 17 38 38 H 1.08004 * 120.03073 * 179.72505 * 20 18 17 39 39 H 1.08991 * 109.47165 * 179.97438 * 23 22 21 40 40 H 1.08999 * 109.47177 * 300.00242 * 23 22 21 41 41 H 1.09003 * 109.46931 * 59.99312 * 23 22 21 42 42 H 1.08003 * 120.02629 * 180.02562 * 24 21 20 43 43 H 1.09007 * 109.47546 * 263.67998 * 26 25 24 44 44 H 1.09002 * 109.47377 * 23.68267 * 26 25 24 45 45 H 1.08999 * 109.47228 * 143.68354 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5071 1.6673 2.4720 6 6 2.4874 3.1649 2.6391 7 1 2.8059 3.8030 1.8280 8 6 2.0638 3.7204 3.8277 9 7 1.6774 2.9434 4.8159 10 14 2.0387 5.5768 4.0346 11 1 0.7191 6.1050 3.6046 12 1 2.2677 5.9190 5.4613 13 1 3.1093 6.1821 3.2024 14 16 4.5951 0.9830 0.8953 15 8 4.6809 0.3219 -0.3597 16 8 5.0646 0.4113 2.1085 17 6 5.4412 2.5173 0.7082 18 6 5.5883 3.0756 -0.5482 19 6 5.0256 2.3711 -1.7557 20 6 6.2516 4.2780 -0.6976 21 6 6.7699 4.9258 0.4143 22 8 7.4234 6.1086 0.2699 23 6 7.9302 6.7192 1.4584 24 6 6.6200 4.3641 1.6739 25 6 5.9562 3.1612 1.8180 26 6 5.7935 2.5502 3.1859 27 1 -0.5401 0.9354 -0.0004 28 1 -0.5401 -0.9353 -0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3585 2.1316 0.0896 31 1 2.6212 1.4026 -0.9313 32 1 1.4989 1.2740 2.6016 33 1 3.1676 1.2270 3.2191 34 1 1.3790 3.3343 5.6521 35 1 5.7304 1.6118 -2.0947 36 1 4.0801 1.8970 -1.4920 37 1 4.8592 3.0946 -2.5538 38 1 6.3702 4.7115 -1.6797 39 1 8.4283 7.6543 1.2024 40 1 7.1062 6.9214 2.1427 41 1 8.6429 6.0472 1.9366 42 1 7.0223 4.8666 2.5412 43 1 6.5807 1.8145 3.3513 44 1 5.8613 3.3313 3.9432 45 1 4.8209 2.0628 3.2528 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000520311658.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:46 Heat of formation + Delta-G solvation = -75.624270 kcal Electronic energy + Delta-G solvation = -29398.558010 eV Core-core repulsion = 25508.829030 eV Total energy + Delta-G solvation = -3889.728980 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.34007 -38.96032 -38.56575 -37.92181 -36.82445 -35.00030 -34.46278 -33.50642 -32.29642 -29.39105 -28.81427 -28.43118 -27.23290 -26.47838 -24.14646 -23.40318 -21.92806 -20.95932 -19.89470 -18.82401 -18.51522 -18.46398 -18.02346 -17.87849 -17.09870 -16.80720 -16.31054 -15.85565 -15.37197 -15.26363 -14.99740 -14.86452 -14.63592 -14.33322 -14.27600 -14.18177 -14.05562 -13.76849 -13.67697 -13.46002 -13.14051 -13.04898 -12.94663 -12.90947 -12.83662 -12.46145 -12.30566 -12.24852 -12.06899 -12.01039 -11.88188 -11.68431 -11.58460 -11.45757 -10.55097 -10.27017 -9.82823 -9.70096 -9.53046 -8.14042 -6.25045 -0.46081 -0.06029 0.26021 1.38108 1.40509 1.42379 1.49462 2.12738 2.16505 2.40678 2.50270 2.87929 3.18138 3.38817 3.63898 3.71118 3.93615 4.02427 4.16689 4.18212 4.27769 4.30638 4.33271 4.38132 4.49791 4.62464 4.66908 4.72845 4.75735 4.81864 4.89362 4.96275 4.99287 5.10782 5.16150 5.28180 5.29347 5.36735 5.49772 5.56445 5.64366 5.73978 5.78977 5.84112 6.03735 6.13975 6.24407 6.85598 7.43839 8.93702 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008986 B = 0.006751 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3115.153443 B = 4146.244921 C = 5967.739368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.186 4.186 3 C 0.143 3.857 4 N -0.983 5.983 5 C 0.260 3.740 6 C -0.529 4.529 7 H 0.060 0.940 8 C 0.024 3.976 9 N -0.922 5.922 10 Si 0.940 3.060 11 H -0.276 1.276 12 H -0.283 1.283 13 H -0.269 1.269 14 S 2.697 3.303 15 O -0.976 6.976 16 O -0.991 6.991 17 C -0.727 4.727 18 C 0.051 3.949 19 C -0.140 4.140 20 C -0.193 4.193 21 C 0.182 3.818 22 O -0.320 6.320 23 C 0.013 3.987 24 C -0.251 4.251 25 C 0.070 3.930 26 C -0.145 4.145 27 H 0.103 0.897 28 H 0.115 0.885 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.024 0.976 33 H 0.028 0.972 34 H 0.265 0.735 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.161 0.839 39 H 0.131 0.869 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.151 0.849 43 H 0.089 0.911 44 H 0.074 0.926 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.629 4.024 -10.414 13.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.206 4.206 3 C 0.019 3.981 4 N -0.821 5.821 5 C 0.137 3.863 6 C -0.568 4.568 7 H 0.079 0.921 8 C -0.176 4.176 9 N -0.561 5.561 10 Si 0.766 3.234 11 H -0.201 1.201 12 H -0.209 1.209 13 H -0.194 1.194 14 S 2.791 3.209 15 O -0.966 6.966 16 O -0.981 6.981 17 C -0.816 4.816 18 C 0.049 3.951 19 C -0.196 4.196 20 C -0.212 4.212 21 C 0.135 3.865 22 O -0.232 6.232 23 C -0.081 4.081 24 C -0.270 4.270 25 C 0.068 3.932 26 C -0.202 4.202 27 H 0.121 0.879 28 H 0.133 0.867 29 H 0.123 0.877 30 H 0.102 0.898 31 H 0.118 0.882 32 H 0.042 0.958 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.116 0.884 36 H 0.096 0.904 37 H 0.121 0.879 38 H 0.179 0.821 39 H 0.149 0.851 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.168 0.832 43 H 0.107 0.893 44 H 0.093 0.907 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.976 3.321 -10.412 13.530 hybrid contribution -0.108 1.584 1.100 1.932 sum 7.868 4.905 -9.312 13.140 Atomic orbital electron populations 1.24016 0.95263 1.02891 0.98419 1.23351 0.97020 0.98512 1.01706 1.20584 0.93150 0.96373 0.88002 1.57315 1.23445 1.85467 1.15855 1.18829 0.95396 0.94913 0.77126 1.21662 1.43578 0.92391 0.99179 0.92142 1.25537 0.95016 1.01439 0.95589 1.70036 1.44737 1.36472 1.04892 0.85825 0.78682 0.81601 0.77302 1.20126 1.20882 1.19355 1.01401 0.72680 0.74452 0.72344 1.93511 1.86584 1.73629 1.42873 1.93519 1.80573 1.77102 1.46921 1.30389 1.24157 1.27276 0.99797 1.19620 0.90117 0.92282 0.93072 1.21485 1.02433 1.01035 0.94676 1.20554 1.05338 0.96603 0.98713 1.19326 0.88701 0.84682 0.93782 1.86057 1.68333 1.32376 1.36447 1.23454 0.99213 0.99334 0.86095 1.21366 1.09118 0.98902 0.97629 1.19447 0.87702 0.91965 0.94093 1.21421 1.05137 1.01192 0.92404 0.87922 0.86684 0.87706 0.89832 0.88156 0.95773 0.95447 0.92609 0.88366 0.90437 0.87928 0.82137 0.85108 0.92447 0.91265 0.83179 0.89289 0.90697 0.89633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.59 14.32 67.79 0.97 -3.62 16 2 C -0.19 -5.89 9.80 25.65 0.25 -5.64 16 3 C 0.14 4.93 5.88 85.63 0.50 5.43 16 4 N -0.98 -40.55 2.76 -523.90 -1.45 -42.00 16 5 C 0.26 12.82 4.79 85.63 0.41 13.23 16 6 C -0.53 -27.03 8.73 25.60 0.22 -26.80 16 7 H 0.06 3.07 7.81 -2.91 -0.02 3.04 16 8 C 0.02 1.27 5.46 84.65 0.46 1.73 16 9 N -0.92 -51.62 13.29 21.45 0.28 -51.34 16 10 Si 0.94 41.73 29.54 68.60 2.03 43.76 16 11 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 12 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 13 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 14 S 2.70 109.30 4.93 -56.49 -0.28 109.03 16 15 O -0.98 -37.49 13.30 -128.00 -1.70 -39.19 16 16 O -0.99 -45.54 13.22 -128.00 -1.69 -47.23 16 17 C -0.73 -27.60 5.97 22.28 0.13 -27.47 16 18 C 0.05 1.64 5.87 -19.88 -0.12 1.52 16 19 C -0.14 -3.76 8.32 71.24 0.59 -3.16 16 20 C -0.19 -5.65 9.61 22.36 0.21 -5.44 16 21 C 0.18 5.52 6.69 22.51 0.15 5.67 16 22 O -0.32 -8.17 10.50 -92.41 -0.97 -9.14 16 23 C 0.01 0.23 9.81 113.37 1.11 1.34 16 24 C -0.25 -8.22 8.66 22.37 0.19 -8.02 16 25 C 0.07 2.66 5.87 -19.88 -0.12 2.54 16 26 C -0.15 -5.84 8.33 71.23 0.59 -5.25 16 27 H 0.10 2.70 7.84 -2.91 -0.02 2.68 16 28 H 0.11 2.62 8.06 -2.91 -0.02 2.59 16 29 H 0.10 3.30 8.06 -2.91 -0.02 3.27 16 30 H 0.08 2.85 7.79 -2.39 -0.02 2.83 16 31 H 0.10 3.01 4.83 -2.39 -0.01 3.00 16 32 H 0.02 1.26 8.11 -2.39 -0.02 1.24 16 33 H 0.03 1.49 5.73 -2.39 -0.01 1.48 16 34 H 0.26 14.11 8.31 -92.70 -0.77 13.34 16 35 H 0.10 2.53 7.82 -2.38 -0.02 2.52 16 36 H 0.08 2.22 3.50 -2.38 -0.01 2.21 16 37 H 0.10 2.02 8.04 -2.39 -0.02 2.00 16 38 H 0.16 3.68 8.06 -2.91 -0.02 3.66 16 39 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.06 1.07 7.66 -2.39 -0.02 1.05 16 41 H 0.07 1.09 7.66 -2.39 -0.02 1.07 16 42 H 0.15 4.13 6.30 -2.91 -0.02 4.11 16 43 H 0.09 3.34 7.84 -2.38 -0.02 3.33 16 44 H 0.07 2.75 8.04 -2.39 -0.02 2.73 16 45 H 0.09 4.00 3.11 -2.39 -0.01 3.99 16 Total: -1.00 -65.14 369.69 2.80 -62.34 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: 1.01 Total: 27.71 kcal Atomic # 6 Polarization: -59.50 SS G_CDS: 5.58 Total: -53.93 kcal Atomic # 7 Polarization: -92.18 SS G_CDS: -1.16 Total: -93.34 kcal Atomic # 8 Polarization: -91.20 SS G_CDS: -4.36 Total: -95.56 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Atomic # 16 Polarization: 109.30 SS G_CDS: -0.28 Total: 109.03 kcal Total: -65.14 2.80 -62.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520311658.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.284 kcal (2) G-P(sol) polarization free energy of solvation -65.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds