Wall clock time and date at job start Sat Apr 11 2020 05:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.39753 * 125.84192 * 2 1 4 4 C 1.36125 * 107.83185 * 180.02562 * 3 2 1 5 5 N 1.39410 * 126.22103 * 180.02562 * 4 3 2 6 6 C 1.34772 * 119.99865 * 359.97438 * 5 4 3 7 7 O 1.21614 * 120.00138 * 359.97438 * 6 5 4 8 8 C 1.47408 * 119.99638 * 180.02562 * 6 5 4 9 9 C 1.41298 * 126.41866 * 359.68576 * 8 6 5 10 10 N 1.30450 * 108.02328 * 179.88015 * 9 8 6 11 11 N 1.39932 * 108.89803 * 0.38460 * 10 9 8 12 12 C 1.46509 * 125.74899 * 179.74911 * 11 10 9 13 13 C 1.34262 * 108.49808 * 359.75167 * 11 10 9 14 14 C 1.50697 * 126.29533 * 179.97438 * 13 11 10 15 15 F 1.39898 * 109.47247 * 120.02620 * 14 13 11 16 16 F 1.39906 * 109.47428 * 240.02403 * 14 13 11 17 17 N 1.35265 * 107.56176 * 0.02562 * 4 3 2 18 18 C 1.46504 * 126.04932 * 180.02562 * 17 4 3 19 19 C 1.50693 * 109.47102 * 270.00012 * 18 17 4 20 20 H 1.08004 * 120.00247 * 0.02562 * 19 18 17 21 21 C 1.37883 * 120.00172 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99717 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00280 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47134 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.47100 * 120.00012 * 23 21 19 26 26 H 1.48498 * 109.46905 * 240.00065 * 23 21 19 27 27 N 1.30853 * 125.83870 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.46958 * 270.02185 * 1 2 3 29 29 H 1.09003 * 109.47333 * 30.02060 * 1 2 3 30 30 H 1.08999 * 109.47416 * 150.02401 * 1 2 3 31 31 H 1.08007 * 126.08562 * 0.02672 * 3 2 1 32 32 H 0.97008 * 119.99693 * 180.02562 * 5 4 3 33 33 H 1.07998 * 125.98671 * 0.02562 * 9 8 6 34 34 H 1.08996 * 109.47015 * 270.00294 * 12 11 10 35 35 H 1.08999 * 109.46664 * 30.00407 * 12 11 10 36 36 H 1.08997 * 109.46623 * 150.00087 * 12 11 10 37 37 H 1.09006 * 109.47353 * 0.02562 * 14 13 11 38 38 H 1.08999 * 109.46543 * 30.00152 * 18 17 4 39 39 H 1.08997 * 109.47063 * 149.99676 * 18 17 4 40 40 H 0.96992 * 120.00101 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3252 1.1329 0.0000 4 6 3.6198 0.7120 -0.0006 5 7 4.7509 1.5269 -0.0003 6 6 4.6154 2.8678 0.0002 7 8 3.5064 3.3669 -0.0002 8 6 5.8115 3.7294 -0.0001 9 6 7.1567 3.2971 0.0055 10 7 7.9205 4.3546 0.0006 11 7 7.1126 5.4972 0.0007 12 6 7.5893 6.8825 0.0013 13 6 5.8271 5.1099 0.0003 14 6 4.6226 6.0155 0.0008 15 9 3.8534 5.7691 -1.1415 16 9 3.8536 5.7683 1.1431 17 7 3.6092 -0.6406 -0.0015 18 6 4.7869 -1.5120 -0.0018 19 6 5.1910 -1.8098 -1.4227 20 1 4.6273 -1.3915 -2.2435 21 6 6.2811 -2.6155 -1.6750 22 7 6.9679 -3.1245 -0.6756 23 14 6.7825 -2.9841 -3.4363 24 1 5.8546 -2.2960 -4.3694 25 1 8.1668 -2.4994 -3.6686 26 1 6.7251 -4.4493 -3.6709 27 7 2.2731 -1.0608 -0.0005 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5134 31 1 1.9902 2.1597 0.0004 32 1 5.6355 1.1287 -0.0011 33 1 7.4935 2.2710 0.0103 34 1 7.7073 7.2257 1.0290 35 1 8.5492 6.9366 -0.5123 36 1 6.8661 7.5157 -0.5126 37 1 4.9498 7.0553 0.0011 38 1 5.6081 -1.0129 0.5126 39 1 4.5495 -2.4438 0.5113 40 1 7.7345 -3.6915 -0.8530 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000524296356.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:52 Heat of formation + Delta-G solvation = 28.747989 kcal Electronic energy + Delta-G solvation = -29561.173589 eV Core-core repulsion = 25050.882550 eV Total energy + Delta-G solvation = -4510.291038 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.125 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.12235 -47.13232 -41.83554 -40.66785 -38.78101 -34.73340 -34.05480 -33.67119 -32.01375 -31.65583 -29.22155 -28.57784 -27.23130 -26.61535 -25.98046 -23.32076 -22.71137 -21.57681 -20.50716 -19.58767 -19.29817 -18.22238 -17.49770 -17.35418 -16.85371 -16.61651 -16.33549 -15.97299 -15.18693 -14.96696 -14.93004 -14.46181 -14.29002 -14.02871 -13.85975 -13.81366 -13.44407 -13.28660 -13.11437 -12.97843 -12.80928 -12.73231 -12.44333 -12.00216 -11.72346 -11.64947 -11.53012 -11.32446 -11.02945 -10.88453 -10.33326 -10.28901 -10.06337 -9.89639 -9.75362 -9.44561 -9.13127 -8.70150 -7.85114 -7.35079 -6.31015 -4.39058 0.85107 1.71931 1.82832 2.70869 2.88504 3.17142 3.17561 3.25953 3.32170 3.40637 3.61321 3.76910 3.82868 3.97872 4.23314 4.27697 4.53929 4.58962 4.68851 4.71882 4.87818 5.02214 5.02538 5.30941 5.43142 5.71896 5.96287 6.08938 6.16698 6.22678 6.25692 6.35338 6.49556 6.74873 6.88764 7.04918 7.09217 7.58292 7.62611 7.69158 7.83024 7.98180 8.37729 8.66901 8.76406 9.28573 10.76071 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009976 B = 0.004123 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.145612 B = 6790.290714 C = 8906.661830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.292 4.292 4 C 0.305 3.695 5 N -0.633 5.633 6 C 0.593 3.407 7 O -0.503 6.503 8 C -0.234 4.234 9 C 0.086 3.914 10 N -0.270 5.270 11 N -0.343 5.343 12 C 0.088 3.912 13 C 0.059 3.941 14 C 0.352 3.648 15 F -0.173 7.173 16 F -0.174 7.174 17 N -0.345 5.345 18 C 0.256 3.744 19 C -0.538 4.538 20 H 0.066 0.934 21 C 0.067 3.933 22 N -0.890 5.890 23 Si 0.904 3.096 24 H -0.271 1.271 25 H -0.281 1.281 26 H -0.280 1.280 27 N -0.286 5.286 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.163 0.837 32 H 0.414 0.586 33 H 0.203 0.797 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.117 0.883 38 H 0.044 0.956 39 H 0.057 0.943 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.828 21.540 2.856 21.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.114 4.114 3 C -0.324 4.324 4 C 0.082 3.918 5 N -0.279 5.279 6 C 0.379 3.621 7 O -0.377 6.377 8 C -0.249 4.249 9 C -0.101 4.101 10 N -0.090 5.090 11 N -0.123 5.123 12 C -0.053 4.053 13 C -0.075 4.075 14 C 0.296 3.704 15 F -0.154 7.154 16 F -0.155 7.155 17 N -0.131 5.131 18 C 0.138 3.862 19 C -0.577 4.577 20 H 0.084 0.916 21 C -0.136 4.136 22 N -0.528 5.528 23 Si 0.731 3.269 24 H -0.195 1.195 25 H -0.207 1.207 26 H -0.206 1.206 27 N -0.111 5.111 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.180 0.820 32 H 0.251 0.749 33 H 0.220 0.780 34 H 0.106 0.894 35 H 0.121 0.879 36 H 0.110 0.890 37 H 0.134 0.866 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.632 21.026 2.903 21.288 hybrid contribution 0.355 -0.154 -0.963 1.038 sum 1.987 20.872 1.940 21.056 Atomic orbital electron populations 1.20011 0.87643 1.02403 1.01992 1.22015 0.96478 0.91064 1.01886 1.21288 0.89004 1.00510 1.21630 1.17827 0.87828 0.83265 1.02833 1.42401 1.08261 1.05123 1.72130 1.16935 0.87751 0.80631 0.76755 1.90769 1.25378 1.73637 1.47909 1.19972 0.94365 0.91637 1.18964 1.24308 0.89975 0.99291 0.96495 1.77312 1.17318 0.90829 1.23556 1.48314 1.02365 1.07603 1.54024 1.22155 1.02922 0.75641 1.04547 1.21849 0.87620 0.94990 1.03010 1.19366 0.81228 0.96437 0.73382 1.93114 1.76504 1.95877 1.49950 1.93109 1.76514 1.95872 1.49967 1.49326 1.06521 1.02104 1.55104 1.19616 0.77877 0.89780 0.98888 1.21398 1.13171 1.31718 0.91413 0.91613 1.24926 0.95717 0.94908 0.98098 1.69925 1.19189 1.32717 1.30967 0.86322 0.78349 0.78419 0.83774 1.19544 1.20655 1.20564 1.77345 0.86108 1.21806 1.25878 0.91418 0.91134 0.91569 0.81999 0.74921 0.78010 0.89406 0.87858 0.88996 0.86569 0.93852 0.92540 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.95 10.44 36.00 0.38 -0.58 16 2 C 0.05 1.04 7.21 -82.45 -0.59 0.45 16 3 C -0.29 -6.19 9.58 -39.78 -0.38 -6.57 16 4 C 0.30 6.62 7.66 -153.21 -1.17 5.45 16 5 N -0.63 -11.61 5.40 -12.45 -0.07 -11.68 16 6 C 0.59 10.25 7.78 -12.53 -0.10 10.15 16 7 O -0.50 -9.66 11.13 5.26 0.06 -9.60 16 8 C -0.23 -3.31 6.13 -105.07 -0.64 -3.95 16 9 C 0.09 1.07 11.50 -16.98 -0.20 0.88 16 10 N -0.27 -3.27 12.50 30.86 0.39 -2.89 16 11 N -0.34 -3.36 3.98 -63.33 -0.25 -3.61 16 12 C 0.09 0.37 11.11 59.85 0.66 1.03 16 13 C 0.06 0.69 6.44 -81.60 -0.53 0.16 16 14 C 0.35 3.62 4.95 36.00 0.18 3.80 16 15 F -0.17 -2.30 16.23 2.25 0.04 -2.26 16 16 F -0.17 -2.26 16.23 2.25 0.04 -2.22 16 17 N -0.35 -8.23 3.60 -61.59 -0.22 -8.45 16 18 C 0.26 6.44 6.01 -5.19 -0.03 6.41 16 19 C -0.54 -14.52 9.39 -34.44 -0.32 -14.85 16 20 H 0.07 1.86 7.81 -52.48 -0.41 1.45 16 21 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 22 N -0.89 -24.27 13.29 55.43 0.74 -23.54 16 23 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 27 N -0.29 -6.79 12.56 33.65 0.42 -6.37 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.16 3.36 5.82 -52.48 -0.31 3.06 16 32 H 0.41 6.91 6.92 -40.82 -0.28 6.63 16 33 H 0.20 2.11 7.50 -52.49 -0.39 1.72 16 34 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 0.14 7.02 -51.93 -0.36 -0.23 16 37 H 0.12 0.55 6.72 -51.93 -0.35 0.20 16 38 H 0.04 1.05 7.50 -51.93 -0.39 0.66 16 39 H 0.06 1.53 8.14 -51.93 -0.42 1.10 16 40 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 355.89 15.07 5.36 5.36 Total: -1.00 -35.23 355.89 -5.53 -40.76 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -4.17 Total: 4.66 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: -2.84 Total: 4.07 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: 1.00 Total: -56.53 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.06 Total: -9.60 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.07 Total: -4.48 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.23 -5.53 -40.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000524296356.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.508 kcal (2) G-P(sol) polarization free energy of solvation -35.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds