Wall clock time and date at job start Sat Apr 11 2020 05:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40419 * 107.86750 * 179.88554 * 3 2 1 5 5 N 1.40115 * 125.97828 * 180.15434 * 4 3 2 6 6 C 1.34772 * 119.99865 * 0.29168 * 5 4 3 7 7 O 1.21620 * 119.99781 * 0.02562 * 6 5 4 8 8 C 1.47411 * 120.00159 * 179.97438 * 6 5 4 9 9 C 1.41302 * 126.41479 * 359.69689 * 8 6 5 10 10 N 1.30447 * 108.02265 * 179.81377 * 9 8 6 11 11 N 1.39935 * 108.89857 * 0.44381 * 10 9 8 12 12 C 1.46507 * 125.75146 * 179.73534 * 11 10 9 13 13 C 1.34267 * 108.49416 * 359.71185 * 11 10 9 14 14 C 1.50702 * 126.29125 * 179.97438 * 13 11 10 15 15 F 1.39896 * 109.47368 * 30.04028 * 14 13 11 16 16 F 1.39901 * 109.46946 * 150.04338 * 14 13 11 17 17 N 1.31225 * 108.04903 * 0.38027 * 4 3 2 18 18 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 19 19 C 1.46494 * 125.97360 * 359.94234 * 18 2 1 20 20 C 1.50702 * 109.47377 * 90.00230 * 19 18 2 21 21 H 1.07999 * 119.99790 * 359.97438 * 20 19 18 22 22 C 1.37876 * 120.00105 * 179.97438 * 20 19 18 23 23 N 1.31509 * 120.00037 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99826 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47080 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.46869 * 119.99907 * 24 22 20 27 27 H 1.48495 * 109.46888 * 239.99859 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 31 31 H 1.08001 * 126.06730 * 0.02562 * 3 2 1 32 32 H 0.96993 * 119.99966 * 180.29571 * 5 4 3 33 33 H 1.08000 * 125.98267 * 359.95434 * 9 8 6 34 34 H 1.08997 * 109.47056 * 269.97593 * 12 11 10 35 35 H 1.09001 * 109.46948 * 29.96964 * 12 11 10 36 36 H 1.08999 * 109.46930 * 149.97609 * 12 11 10 37 37 H 1.09002 * 109.46839 * 270.03752 * 14 13 11 38 38 H 1.08999 * 109.46728 * 209.99683 * 19 18 2 39 39 H 1.08994 * 109.47426 * 329.99585 * 19 18 2 40 40 H 0.96997 * 120.00178 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0027 5 7 4.7732 1.4746 0.0066 6 6 4.6365 2.8153 0.0141 7 8 3.5270 3.3134 0.0179 8 6 5.8317 3.6781 0.0188 9 6 7.1774 3.2471 0.0223 10 7 7.9401 4.3053 0.0219 11 7 7.1312 5.4471 0.0284 12 6 7.6065 6.8329 0.0356 13 6 5.8460 5.0585 0.0264 14 6 4.6406 5.9631 0.0322 15 9 4.9527 7.1602 -0.6209 16 9 3.5815 5.3329 -0.6299 17 7 3.6337 -0.6577 -0.0041 18 7 2.3016 -1.0910 -0.0059 19 6 1.8499 -2.4846 -0.0123 20 6 1.6939 -2.9556 -1.4353 21 1 1.9093 -2.2839 -2.2531 22 6 1.2762 -4.2441 -1.6930 23 7 1.0145 -5.0621 -0.6972 24 14 1.0822 -4.8277 -3.4569 25 1 1.4359 -3.7240 -4.3852 26 1 1.9815 -5.9847 -3.6972 27 1 -0.3257 -5.2382 -3.6904 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5186 30 1 -0.3633 0.8928 -0.5090 31 1 1.9719 2.1210 0.0004 32 1 5.6581 1.0773 0.0039 33 1 7.5151 2.2212 0.0227 34 1 7.7245 7.1712 1.0650 35 1 8.5662 6.8905 -0.4779 36 1 6.8825 7.4680 -0.4748 37 1 4.3507 6.1754 1.0613 38 1 2.5850 -3.1070 0.4979 39 1 0.8918 -2.5583 0.5020 40 1 0.7210 -5.9687 -0.8785 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000534317864.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:57 Heat of formation + Delta-G solvation = 32.767995 kcal Electronic energy + Delta-G solvation = -28859.545220 eV Core-core repulsion = 24349.428502 eV Total energy + Delta-G solvation = -4510.116718 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.125 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -49.39585 -47.30986 -41.89287 -40.59323 -38.90869 -34.83937 -34.00419 -33.30219 -31.85253 -31.36392 -30.78944 -28.05086 -26.60701 -26.44916 -26.27337 -23.67161 -22.64572 -21.57517 -20.59240 -19.69305 -19.34634 -18.10114 -17.95743 -17.29603 -16.69731 -16.52085 -16.08160 -16.05305 -15.37609 -15.25112 -15.01486 -14.81505 -14.33183 -14.17388 -14.04495 -13.88596 -13.72080 -13.16874 -13.05846 -12.94065 -12.71596 -12.46569 -12.29603 -12.11472 -11.92521 -11.62384 -11.39152 -11.32086 -11.04432 -10.84046 -10.39465 -10.22784 -10.09430 -9.88726 -9.53090 -9.47877 -9.19337 -8.63610 -7.89672 -7.40981 -6.24269 -4.31748 0.79297 1.68734 1.73476 2.71341 2.81404 3.05194 3.17247 3.21536 3.29537 3.36102 3.63676 3.81674 3.85445 4.00906 4.23519 4.32391 4.42006 4.56781 4.62636 4.73619 4.94904 4.96210 5.09443 5.22604 5.50482 5.74108 5.86770 5.98919 6.11615 6.12938 6.28416 6.50907 6.60719 6.76454 6.96099 6.97311 7.07568 7.48352 7.68290 7.70587 7.90656 8.08344 8.31035 8.68202 8.77685 9.34763 10.82943 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021255 B = 0.002447 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.990368 B =11440.271887 C =11958.511867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.091 3.909 3 C -0.287 4.287 4 C 0.266 3.734 5 N -0.624 5.624 6 C 0.591 3.409 7 O -0.503 6.503 8 C -0.243 4.243 9 C 0.083 3.917 10 N -0.276 5.276 11 N -0.339 5.339 12 C 0.077 3.923 13 C 0.066 3.934 14 C 0.341 3.659 15 F -0.200 7.200 16 F -0.147 7.147 17 N -0.321 5.321 18 N -0.317 5.317 19 C 0.258 3.742 20 C -0.535 4.535 21 H 0.065 0.935 22 C 0.065 3.935 23 N -0.892 5.892 24 Si 0.905 3.095 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.281 1.281 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.161 0.839 32 H 0.408 0.592 33 H 0.200 0.800 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.136 0.864 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.033 23.706 4.337 26.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 C -0.318 4.318 4 C 0.014 3.986 5 N -0.271 5.271 6 C 0.377 3.623 7 O -0.377 6.377 8 C -0.258 4.258 9 C -0.104 4.104 10 N -0.096 5.096 11 N -0.118 5.118 12 C -0.063 4.063 13 C -0.068 4.068 14 C 0.285 3.715 15 F -0.181 7.181 16 F -0.128 7.128 17 N -0.151 5.151 18 N -0.100 5.100 19 C 0.141 3.859 20 C -0.573 4.573 21 H 0.083 0.917 22 C -0.138 4.138 23 N -0.530 5.530 24 Si 0.732 3.268 25 H -0.196 1.196 26 H -0.207 1.207 27 H -0.207 1.207 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.178 0.822 32 H 0.243 0.757 33 H 0.217 0.783 34 H 0.103 0.897 35 H 0.117 0.883 36 H 0.127 0.873 37 H 0.153 0.847 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.122 23.316 4.346 26.196 hybrid contribution -0.649 -0.359 -1.053 1.288 sum 10.472 22.958 3.293 25.447 Atomic orbital electron populations 1.20375 0.87964 1.03859 1.02486 1.21065 0.94902 0.87152 1.00953 1.21266 0.89650 0.99860 1.21056 1.18901 0.87051 0.89513 1.03144 1.42109 1.07528 1.04644 1.72813 1.17002 0.87757 0.80729 0.76828 1.90818 1.25462 1.73377 1.47996 1.19927 0.94448 0.91283 1.20190 1.24200 0.90003 0.99098 0.97062 1.77287 1.17644 0.90979 1.23664 1.48315 1.02326 1.07633 1.53530 1.22448 1.03529 0.75734 1.04614 1.21943 0.87598 0.94895 1.02405 1.19737 0.81437 0.75735 0.94601 1.92919 1.92963 1.47714 1.84531 1.93267 1.55435 1.81306 1.82803 1.77252 0.99959 1.08460 1.29454 1.48985 1.00958 1.07773 1.52250 1.19683 0.95967 0.71381 0.98910 1.21375 1.46594 0.97947 0.91424 0.91669 1.24928 0.94711 0.96066 0.98108 1.69926 1.45075 1.06925 1.31065 0.86310 0.77853 0.78796 0.83802 1.19551 1.20676 1.20659 0.91125 0.89958 0.90602 0.82162 0.75681 0.78295 0.89725 0.88315 0.87339 0.84703 0.93010 0.92803 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.51 9.89 36.01 0.36 -1.15 16 2 C 0.09 1.90 6.92 -82.28 -0.57 1.33 16 3 C -0.29 -5.86 9.52 -39.83 -0.38 -6.24 16 4 C 0.27 5.38 8.11 -154.42 -1.25 4.13 16 5 N -0.62 -9.68 5.44 -12.11 -0.07 -9.74 16 6 C 0.59 8.73 7.73 -12.53 -0.10 8.63 16 7 O -0.50 -8.58 10.30 5.26 0.05 -8.53 16 8 C -0.24 -2.84 6.09 -105.07 -0.64 -3.48 16 9 C 0.08 0.81 11.50 -16.98 -0.20 0.62 16 10 N -0.28 -2.86 12.50 30.86 0.39 -2.48 16 11 N -0.34 -3.06 3.98 -63.33 -0.25 -3.31 16 12 C 0.08 0.37 11.16 59.85 0.67 1.04 16 13 C 0.07 0.67 6.74 -81.59 -0.55 0.12 16 14 C 0.34 3.06 5.53 36.01 0.20 3.26 16 15 F -0.20 -1.62 14.55 2.25 0.03 -1.58 16 16 F -0.15 -1.94 13.52 2.25 0.03 -1.91 16 17 N -0.32 -7.35 12.59 31.43 0.40 -6.96 16 18 N -0.32 -7.51 3.59 -58.33 -0.21 -7.72 16 19 C 0.26 6.61 5.81 -5.20 -0.03 6.58 16 20 C -0.53 -14.73 9.39 -34.44 -0.32 -15.05 16 21 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 22 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 23 N -0.89 -25.04 13.29 55.43 0.74 -24.30 16 24 Si 0.91 21.14 29.54 -169.99 -5.02 16.12 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.08 1.51 7.71 -51.93 -0.40 1.11 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.16 3.16 5.91 -52.49 -0.31 2.85 16 32 H 0.41 5.02 7.78 -40.82 -0.32 4.71 16 33 H 0.20 1.31 7.50 -52.49 -0.39 0.91 16 34 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.11 0.45 5.52 -51.93 -0.29 0.16 16 37 H 0.14 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.05 1.36 7.65 -51.93 -0.40 0.96 16 40 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 351.51 15.07 5.30 5.30 Total: -1.00 -34.67 351.51 -5.71 -40.38 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -4.19 Total: 3.26 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -2.91 Total: 1.46 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: 0.99 Total: -54.50 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.05 Total: -8.53 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.06 Total: -3.49 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.67 -5.71 -40.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534317864.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.152 kcal (2) G-P(sol) polarization free energy of solvation -34.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds