Wall clock time and date at job start Sat Apr 11 2020 05:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40419 * 107.86750 * 179.88554 * 3 2 1 5 5 N 1.40115 * 125.97828 * 180.15434 * 4 3 2 6 6 C 1.34772 * 119.99865 * 0.29168 * 5 4 3 7 7 O 1.21620 * 119.99781 * 0.02562 * 6 5 4 8 8 C 1.47411 * 120.00159 * 179.97438 * 6 5 4 9 9 C 1.41302 * 126.41479 * 359.69689 * 8 6 5 10 10 N 1.30447 * 108.02265 * 179.81377 * 9 8 6 11 11 N 1.39935 * 108.89857 * 0.44381 * 10 9 8 12 12 C 1.46507 * 125.75146 * 179.73534 * 11 10 9 13 13 C 1.34267 * 108.49416 * 359.71185 * 11 10 9 14 14 C 1.50702 * 126.29125 * 179.97438 * 13 11 10 15 15 F 1.39896 * 109.47368 * 30.04028 * 14 13 11 16 16 F 1.39901 * 109.46946 * 150.04338 * 14 13 11 17 17 N 1.31225 * 108.04903 * 0.38027 * 4 3 2 18 18 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 19 19 C 1.46494 * 125.97360 * 359.94234 * 18 2 1 20 20 C 1.50702 * 109.47377 * 90.00230 * 19 18 2 21 21 H 1.07999 * 119.99790 * 359.97438 * 20 19 18 22 22 C 1.37876 * 120.00105 * 179.97438 * 20 19 18 23 23 N 1.31509 * 120.00037 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99826 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47080 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.46869 * 119.99907 * 24 22 20 27 27 H 1.48495 * 109.46888 * 239.99859 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 31 31 H 1.08001 * 126.06730 * 0.02562 * 3 2 1 32 32 H 0.96993 * 119.99966 * 180.29571 * 5 4 3 33 33 H 1.08000 * 125.98267 * 359.95434 * 9 8 6 34 34 H 1.08997 * 109.47056 * 269.97593 * 12 11 10 35 35 H 1.09001 * 109.46948 * 29.96964 * 12 11 10 36 36 H 1.08999 * 109.46930 * 149.97609 * 12 11 10 37 37 H 1.09002 * 109.46839 * 270.03752 * 14 13 11 38 38 H 1.08999 * 109.46728 * 209.99683 * 19 18 2 39 39 H 1.08994 * 109.47426 * 329.99585 * 19 18 2 40 40 H 0.96997 * 120.00178 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0027 5 7 4.7732 1.4746 0.0066 6 6 4.6365 2.8153 0.0141 7 8 3.5270 3.3134 0.0179 8 6 5.8317 3.6781 0.0188 9 6 7.1774 3.2471 0.0223 10 7 7.9401 4.3053 0.0219 11 7 7.1312 5.4471 0.0284 12 6 7.6065 6.8329 0.0356 13 6 5.8460 5.0585 0.0264 14 6 4.6406 5.9631 0.0322 15 9 4.9527 7.1602 -0.6209 16 9 3.5815 5.3329 -0.6299 17 7 3.6337 -0.6577 -0.0041 18 7 2.3016 -1.0910 -0.0059 19 6 1.8499 -2.4846 -0.0123 20 6 1.6939 -2.9556 -1.4353 21 1 1.9093 -2.2839 -2.2531 22 6 1.2762 -4.2441 -1.6930 23 7 1.0145 -5.0621 -0.6972 24 14 1.0822 -4.8277 -3.4569 25 1 1.4359 -3.7240 -4.3852 26 1 1.9815 -5.9847 -3.6972 27 1 -0.3257 -5.2382 -3.6904 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5186 30 1 -0.3633 0.8928 -0.5090 31 1 1.9719 2.1210 0.0004 32 1 5.6581 1.0773 0.0039 33 1 7.5151 2.2212 0.0227 34 1 7.7245 7.1712 1.0650 35 1 8.5662 6.8905 -0.4779 36 1 6.8825 7.4680 -0.4748 37 1 4.3507 6.1754 1.0613 38 1 2.5850 -3.1070 0.4979 39 1 0.8918 -2.5583 0.5020 40 1 0.7210 -5.9687 -0.8785 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000534317864.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:56 Heat of formation + Delta-G solvation = 9.956626 kcal Electronic energy + Delta-G solvation = -28860.534395 eV Core-core repulsion = 24349.428502 eV Total energy + Delta-G solvation = -4511.105893 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.125 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -50.12105 -48.09815 -42.71210 -42.14123 -40.17565 -36.29388 -35.32592 -34.60447 -33.03590 -32.68078 -32.40213 -29.10532 -28.10825 -27.81449 -27.17863 -25.19479 -24.05272 -22.55194 -21.59643 -21.12331 -20.64438 -19.06715 -18.76636 -18.66858 -18.09537 -17.68715 -17.36383 -17.02397 -16.81146 -16.35292 -16.12993 -16.08172 -15.57719 -15.49362 -15.07373 -14.83960 -14.64049 -14.49246 -14.30940 -13.89799 -13.76585 -13.71174 -13.54384 -13.48907 -13.24180 -13.11838 -12.80447 -12.68881 -12.65709 -12.24770 -12.07936 -12.03774 -11.49119 -11.29562 -10.81496 -10.79575 -10.71834 -10.01782 -9.52582 -9.07294 -8.31226 -6.48757 -0.04038 0.84301 1.01174 1.17073 1.37737 1.39427 1.43508 1.53503 1.83681 2.29073 2.36230 2.44276 2.50809 2.98191 3.00622 3.22979 3.48822 3.66303 3.79248 3.92740 4.10950 4.20114 4.28734 4.33051 4.47363 4.54477 4.64874 4.80402 4.84840 4.90149 5.02509 5.05237 5.14306 5.18614 5.31803 5.47657 5.55786 5.83242 5.98991 6.20276 6.30034 6.33803 6.64808 7.04393 7.15490 7.22306 8.74641 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021255 B = 0.002447 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.990368 B =11440.271887 C =11958.511867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.086 3.914 3 C -0.295 4.295 4 C 0.277 3.723 5 N -0.618 5.618 6 C 0.594 3.406 7 O -0.526 6.526 8 C -0.267 4.267 9 C 0.089 3.911 10 N -0.293 5.293 11 N -0.331 5.331 12 C 0.067 3.933 13 C 0.071 3.929 14 C 0.338 3.662 15 F -0.194 7.194 16 F -0.174 7.174 17 N -0.358 5.358 18 N -0.344 5.344 19 C 0.276 3.724 20 C -0.551 4.551 21 H 0.048 0.952 22 C 0.023 3.977 23 N -0.918 5.918 24 Si 0.971 3.029 25 H -0.275 1.275 26 H -0.274 1.274 27 H -0.267 1.267 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.170 0.830 32 H 0.422 0.578 33 H 0.225 0.775 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.117 0.883 37 H 0.173 0.827 38 H 0.025 0.975 39 H 0.052 0.948 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.603 25.523 4.014 27.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.044 4.044 3 C -0.326 4.326 4 C 0.023 3.977 5 N -0.267 5.267 6 C 0.382 3.618 7 O -0.402 6.402 8 C -0.283 4.283 9 C -0.097 4.097 10 N -0.113 5.113 11 N -0.110 5.110 12 C -0.072 4.072 13 C -0.066 4.066 14 C 0.283 3.717 15 F -0.175 7.175 16 F -0.155 7.155 17 N -0.188 5.188 18 N -0.126 5.126 19 C 0.157 3.843 20 C -0.590 4.590 21 H 0.067 0.933 22 C -0.178 4.178 23 N -0.556 5.556 24 Si 0.795 3.205 25 H -0.199 1.199 26 H -0.200 1.200 27 H -0.192 1.192 28 H 0.111 0.889 29 H 0.085 0.915 30 H 0.120 0.880 31 H 0.187 0.813 32 H 0.260 0.740 33 H 0.241 0.759 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.135 0.865 37 H 0.189 0.811 38 H 0.043 0.957 39 H 0.070 0.930 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.736 25.173 4.032 28.065 hybrid contribution -0.729 -0.717 -0.911 1.370 sum 11.007 24.456 3.121 27.000 Atomic orbital electron populations 1.20496 0.85447 1.04311 1.04087 1.21750 0.96641 0.86474 0.99560 1.21455 0.89807 0.99986 1.21319 1.19219 0.88610 0.89128 1.00740 1.42204 1.06967 1.04694 1.72881 1.17432 0.88501 0.80308 0.75578 1.90793 1.26743 1.73619 1.48997 1.19683 0.93864 0.91582 1.23199 1.24588 0.89051 1.00235 0.95822 1.77280 1.18160 0.91470 1.24402 1.48681 1.01794 1.08690 1.51822 1.22824 1.04179 0.73668 1.06496 1.22139 0.88518 0.94706 1.01201 1.20131 0.80235 0.75405 0.95951 1.92928 1.92847 1.47100 1.84651 1.93209 1.56737 1.82012 1.83512 1.77173 1.00027 1.09938 1.31704 1.48777 1.01774 1.07495 1.54594 1.19229 0.94908 0.72497 0.97687 1.21469 1.47344 0.98318 0.91821 0.93341 1.25715 0.94008 0.95917 1.02161 1.70002 1.45231 1.07393 1.32994 0.85319 0.78465 0.78071 0.78688 1.19927 1.19975 1.19204 0.88860 0.91549 0.87974 0.81299 0.74021 0.75918 0.87359 0.87246 0.86534 0.81061 0.95719 0.93024 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.86 9.89 71.24 0.70 -2.15 16 2 C 0.09 3.64 6.92 41.38 0.29 3.92 16 3 C -0.30 -12.03 9.52 22.11 0.21 -11.82 16 4 C 0.28 11.27 8.11 133.34 1.08 12.35 16 5 N -0.62 -18.98 5.44 -310.47 -1.69 -20.66 16 6 C 0.59 17.14 7.73 86.66 0.67 17.81 16 7 O -0.53 -17.69 10.30 -4.09 -0.04 -17.73 16 8 C -0.27 -5.90 6.09 -20.15 -0.12 -6.03 16 9 C 0.09 1.60 11.50 85.65 0.99 2.58 16 10 N -0.29 -5.50 12.50 -56.27 -0.70 -6.20 16 11 N -0.33 -5.21 3.98 -354.28 -1.41 -6.62 16 12 C 0.07 0.46 11.16 127.77 1.43 1.88 16 13 C 0.07 1.31 6.74 42.14 0.28 1.60 16 14 C 0.34 5.40 5.53 71.24 0.39 5.79 16 15 F -0.19 -2.70 14.55 44.97 0.65 -2.04 16 16 F -0.17 -4.41 13.52 44.97 0.61 -3.81 16 17 N -0.36 -16.84 12.59 -54.47 -0.69 -17.52 16 18 N -0.34 -16.74 3.59 -338.46 -1.22 -17.96 16 19 C 0.28 14.65 5.81 85.63 0.50 15.15 16 20 C -0.55 -31.12 9.39 25.60 0.24 -30.88 16 21 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 22 C 0.02 1.26 5.46 84.66 0.46 1.72 16 23 N -0.92 -51.97 13.29 21.45 0.28 -51.68 16 24 Si 0.97 43.39 29.54 68.60 2.03 45.41 16 25 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 26 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 27 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 28 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.07 2.44 7.71 -2.39 -0.02 2.42 16 30 H 0.10 2.84 8.14 -2.38 -0.02 2.82 16 31 H 0.17 6.59 5.91 -2.91 -0.02 6.57 16 32 H 0.42 10.18 7.78 -92.71 -0.72 9.46 16 33 H 0.22 2.53 7.50 -2.91 -0.02 2.51 16 34 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.12 0.64 5.52 -2.39 -0.01 0.62 16 37 H 0.17 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.02 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.05 2.71 7.65 -2.39 -0.02 2.69 16 40 H 0.27 14.40 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -75.82 351.51 5.35 -70.47 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.40 Total: 16.41 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 7.12 Total: 11.93 kcal Atomic # 7 Polarization: -115.23 SS G_CDS: -5.42 Total: -120.65 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.04 Total: -17.73 kcal Atomic # 9 Polarization: -7.11 SS G_CDS: 1.26 Total: -5.85 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -75.82 5.35 -70.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534317864.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.425 kcal (2) G-P(sol) polarization free energy of solvation -75.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds