Wall clock time and date at job start Sat Apr 11 2020 05:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40419 * 107.86750 * 179.88554 * 3 2 1 5 5 N 1.40115 * 125.97828 * 180.15434 * 4 3 2 6 6 C 1.34773 * 119.99729 * 0.29633 * 5 4 3 7 7 O 1.21616 * 120.00440 * 359.97438 * 6 5 4 8 8 C 1.47414 * 119.99946 * 180.02562 * 6 5 4 9 9 C 1.38054 * 126.41327 * 359.67953 * 8 6 5 10 10 N 1.34273 * 107.41044 * 179.89929 * 9 8 6 11 11 C 1.46508 * 125.75063 * 180.13769 * 10 9 8 12 12 N 1.39926 * 108.49256 * 0.37307 * 10 9 8 13 13 C 1.30443 * 108.90120 * 359.76260 * 12 10 9 14 14 C 1.50702 * 125.98844 * 179.97438 * 13 12 10 15 15 F 1.39901 * 109.47339 * 30.04674 * 14 13 12 16 16 F 1.39907 * 109.47320 * 150.04371 * 14 13 12 17 17 N 1.31225 * 108.04903 * 0.38027 * 4 3 2 18 18 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 19 19 C 1.46494 * 125.97409 * 359.97438 * 18 2 1 20 20 C 1.50702 * 109.47191 * 90.00452 * 19 18 2 21 21 H 1.07999 * 120.00012 * 359.97438 * 20 19 18 22 22 C 1.37879 * 120.00066 * 180.02562 * 20 19 18 23 23 N 1.31515 * 119.99967 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99932 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47458 * 90.00261 * 24 22 20 26 26 H 1.48505 * 109.47134 * 210.00515 * 24 22 20 27 27 H 1.48502 * 109.47243 * 330.00258 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 31 31 H 1.08001 * 126.06730 * 0.02562 * 3 2 1 32 32 H 0.97002 * 119.99900 * 180.29376 * 5 4 3 33 33 H 1.08001 * 126.29441 * 0.02562 * 9 8 6 34 34 H 1.09001 * 109.46698 * 270.25209 * 11 10 9 35 35 H 1.09000 * 109.47260 * 30.24886 * 11 10 9 36 36 H 1.09000 * 109.46737 * 150.25165 * 11 10 9 37 37 H 1.09003 * 109.47585 * 270.04417 * 14 13 12 38 38 H 1.09008 * 109.46928 * 210.00044 * 19 18 2 39 39 H 1.08997 * 109.47491 * 329.99795 * 19 18 2 40 40 H 0.96999 * 119.99792 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0027 5 7 4.7732 1.4746 0.0066 6 6 4.6365 2.8153 0.0141 7 8 3.5270 3.3134 0.0171 8 6 5.8317 3.6781 0.0177 9 6 7.1464 3.2570 0.0203 10 7 7.9199 4.3545 0.0208 11 6 9.3849 4.3693 0.0205 12 7 7.0909 5.4817 0.0273 13 6 5.8464 5.0909 0.0255 14 6 4.6362 5.9890 0.0313 15 9 4.9418 7.1877 -0.6221 16 9 3.5803 5.3531 -0.6307 17 7 3.6337 -0.6577 -0.0041 18 7 2.3016 -1.0910 -0.0059 19 6 1.8499 -2.4846 -0.0129 20 6 1.6946 -2.9551 -1.4362 21 1 1.9104 -2.2832 -2.2537 22 6 1.2761 -4.2432 -1.6946 23 7 1.1401 -4.6537 -2.9366 24 14 0.9022 -5.4052 -0.2806 25 1 -0.5286 -5.2810 0.0971 26 1 1.1842 -6.8017 -0.6997 27 1 1.7538 -5.0567 0.8850 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5186 30 1 -0.3633 0.8928 -0.5090 31 1 1.9719 2.1210 0.0004 32 1 5.6582 1.0773 0.0039 33 1 7.4897 2.2329 0.0196 34 1 9.7485 4.3677 1.0481 35 1 9.7571 3.4856 -0.4979 36 1 9.7391 5.2655 -0.4889 37 1 4.3452 6.2001 1.0603 38 1 2.5848 -3.1073 0.4975 39 1 0.8915 -2.5585 0.5009 40 1 0.8459 -5.5599 -3.1184 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000536609574.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:08 Heat of formation + Delta-G solvation = 35.686030 kcal Electronic energy + Delta-G solvation = -28713.454400 eV Core-core repulsion = 24203.464218 eV Total energy + Delta-G solvation = -4509.990182 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.125 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.94534 -46.92523 -41.92311 -40.68075 -38.94499 -34.91144 -34.17536 -33.34375 -31.81396 -31.16690 -30.66206 -28.88376 -27.21447 -26.38951 -25.90567 -23.53403 -22.42097 -21.46823 -20.55359 -19.74221 -19.35022 -17.89075 -17.60983 -17.11302 -16.98606 -16.58232 -16.13949 -16.10103 -15.94606 -15.32367 -15.03588 -14.51396 -14.37982 -13.94331 -13.75799 -13.57680 -13.43762 -13.28599 -13.15498 -13.02069 -12.76050 -12.57084 -12.37808 -12.26720 -11.96602 -11.65532 -11.54256 -11.34910 -11.17209 -10.81070 -10.55269 -10.11021 -9.98725 -9.93132 -9.60822 -9.54360 -9.20954 -8.78880 -7.97767 -7.45735 -6.26491 -4.29681 1.01491 1.46254 1.69220 2.62399 2.73263 3.12755 3.14577 3.22468 3.23249 3.33971 3.77677 3.79938 3.83606 4.08289 4.20764 4.21174 4.54647 4.56928 4.74764 4.77759 4.85390 4.90836 5.01682 5.24810 5.40272 5.60655 5.67712 5.89712 6.05277 6.19642 6.22563 6.38356 6.48380 6.57096 6.61858 6.77722 6.90931 7.28847 7.40591 7.61585 7.87110 8.28421 8.31663 8.58277 8.79650 9.28698 10.86022 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019128 B = 0.002539 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.492004 B =11026.930634 C =11994.462461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.094 3.906 3 C -0.284 4.284 4 C 0.271 3.729 5 N -0.628 5.628 6 C 0.592 3.408 7 O -0.495 6.495 8 C -0.254 4.254 9 C 0.105 3.895 10 N -0.352 5.352 11 C 0.093 3.907 12 N -0.259 5.259 13 C 0.054 3.946 14 C 0.356 3.644 15 F -0.196 7.196 16 F -0.157 7.157 17 N -0.320 5.320 18 N -0.318 5.318 19 C 0.232 3.768 20 C -0.541 4.541 21 H 0.081 0.919 22 C 0.079 3.921 23 N -0.887 5.887 24 Si 0.872 3.128 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.263 1.263 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.164 0.836 32 H 0.405 0.595 33 H 0.193 0.807 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.131 0.869 38 H 0.049 0.951 39 H 0.046 0.954 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.634 18.245 9.513 24.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.036 4.036 3 C -0.315 4.315 4 C 0.018 3.982 5 N -0.275 5.275 6 C 0.377 3.623 7 O -0.368 6.368 8 C -0.269 4.269 9 C -0.046 4.046 10 N -0.131 5.131 11 C -0.047 4.047 12 N -0.081 5.081 13 C -0.115 4.115 14 C 0.300 3.700 15 F -0.178 7.178 16 F -0.138 7.138 17 N -0.150 5.150 18 N -0.100 5.100 19 C 0.113 3.887 20 C -0.579 4.579 21 H 0.099 0.901 22 C -0.125 4.125 23 N -0.523 5.523 24 Si 0.698 3.302 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.188 1.188 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.181 0.819 32 H 0.240 0.760 33 H 0.210 0.790 34 H 0.103 0.897 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.148 0.852 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 14.414 18.309 9.355 25.110 hybrid contribution -0.385 -1.145 0.346 1.257 sum 14.029 17.164 9.701 24.198 Atomic orbital electron populations 1.20408 0.87843 1.04222 1.02441 1.21068 0.94926 0.86956 1.00684 1.21305 0.89613 0.99969 1.20564 1.18900 0.87191 0.89435 1.02671 1.42200 1.07295 1.04724 1.73320 1.17027 0.87981 0.80450 0.76795 1.90823 1.25315 1.73217 1.47456 1.19964 0.92832 0.92590 1.21555 1.23240 0.90111 0.94040 0.97187 1.48407 1.07474 1.03430 1.53757 1.22134 0.72585 1.05597 1.04376 1.77188 1.00014 1.07842 1.23094 1.22959 0.94053 0.93429 1.01097 1.19399 0.80637 0.75761 0.94183 1.93023 1.93541 1.46963 1.84228 1.93225 1.56132 1.81383 1.83085 1.77234 0.99475 1.08583 1.29727 1.48494 1.01233 1.06988 1.53246 1.19979 0.95265 0.73798 0.99657 1.21194 1.47310 0.99032 0.90394 0.90077 1.24813 0.94500 0.97470 0.95757 1.69876 1.45657 1.18340 1.18476 0.86908 0.79464 0.80993 0.82805 1.19594 1.20537 1.18798 0.91096 0.89897 0.90282 0.81902 0.75977 0.78970 0.89696 0.88435 0.88457 0.85238 0.93267 0.93666 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.51 9.89 36.01 0.36 -1.15 16 2 C 0.09 1.94 6.92 -82.28 -0.57 1.37 16 3 C -0.28 -5.70 9.52 -39.83 -0.38 -6.08 16 4 C 0.27 5.33 8.11 -154.42 -1.25 4.08 16 5 N -0.63 -9.35 5.44 -12.11 -0.07 -9.41 16 6 C 0.59 8.66 7.74 -12.53 -0.10 8.56 16 7 O -0.50 -8.61 10.38 5.26 0.05 -8.55 16 8 C -0.25 -2.93 6.09 -105.07 -0.64 -3.57 16 9 C 0.11 0.82 10.99 -16.55 -0.18 0.63 16 10 N -0.35 -2.74 3.98 -67.59 -0.27 -3.01 16 11 C 0.09 0.28 11.44 59.85 0.68 0.96 16 12 N -0.26 -2.86 12.43 33.90 0.42 -2.44 16 13 C 0.05 0.64 6.89 -82.02 -0.56 0.07 16 14 C 0.36 4.08 5.66 36.01 0.20 4.28 16 15 F -0.20 -2.40 17.27 2.25 0.04 -2.36 16 16 F -0.16 -2.32 13.58 2.25 0.03 -2.29 16 17 N -0.32 -7.11 12.59 31.43 0.40 -6.71 16 18 N -0.32 -7.27 3.59 -58.33 -0.21 -7.48 16 19 C 0.23 5.52 4.88 -5.20 -0.03 5.50 16 20 C -0.54 -15.04 9.94 -34.44 -0.34 -15.39 16 21 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 22 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 23 N -0.89 -26.23 13.96 55.43 0.77 -25.45 16 24 Si 0.87 19.94 27.47 -169.99 -4.67 15.27 16 25 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.26 -5.75 6.54 56.52 0.37 -5.38 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.08 1.48 7.71 -51.93 -0.40 1.08 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.16 3.19 5.91 -52.49 -0.31 2.88 16 32 H 0.41 4.57 7.75 -40.82 -0.32 4.25 16 33 H 0.19 0.70 7.46 -52.49 -0.39 0.31 16 34 H 0.08 0.14 8.14 -51.93 -0.42 -0.29 16 35 H 0.10 0.06 8.14 -51.93 -0.42 -0.37 16 36 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 37 H 0.13 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.05 1.18 7.20 -51.92 -0.37 0.80 16 39 H 0.05 0.99 7.07 -51.93 -0.37 0.62 16 40 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 353.29 15.07 5.32 5.32 Total: -1.00 -37.10 353.29 -5.36 -42.46 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -4.29 Total: 3.30 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -2.90 Total: 1.35 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: 1.05 Total: -54.51 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.05 Total: -8.55 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 0.07 Total: -4.65 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.67 Total: 15.27 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -37.10 -5.36 -42.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000536609574.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.151 kcal (2) G-P(sol) polarization free energy of solvation -37.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds