Wall clock time and date at job start Sat Apr 11 2020 05:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40419 * 107.86750 * 179.88554 * 3 2 1 5 5 N 1.40115 * 125.97828 * 180.15434 * 4 3 2 6 6 C 1.34773 * 119.99729 * 0.29633 * 5 4 3 7 7 O 1.21616 * 120.00440 * 359.97438 * 6 5 4 8 8 C 1.47414 * 119.99946 * 180.02562 * 6 5 4 9 9 C 1.38054 * 126.41327 * 359.67953 * 8 6 5 10 10 N 1.34273 * 107.41044 * 179.89929 * 9 8 6 11 11 C 1.46508 * 125.75063 * 180.13769 * 10 9 8 12 12 N 1.39926 * 108.49256 * 0.37307 * 10 9 8 13 13 C 1.30443 * 108.90120 * 359.76260 * 12 10 9 14 14 C 1.50702 * 125.98844 * 179.97438 * 13 12 10 15 15 F 1.39901 * 109.47339 * 30.04674 * 14 13 12 16 16 F 1.39907 * 109.47320 * 150.04371 * 14 13 12 17 17 N 1.31225 * 108.04903 * 0.38027 * 4 3 2 18 18 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 19 19 C 1.46494 * 125.97409 * 359.97438 * 18 2 1 20 20 C 1.50702 * 109.47191 * 90.00452 * 19 18 2 21 21 H 1.07999 * 120.00012 * 359.97438 * 20 19 18 22 22 C 1.37879 * 120.00066 * 180.02562 * 20 19 18 23 23 N 1.31515 * 119.99967 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99932 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47458 * 90.00261 * 24 22 20 26 26 H 1.48505 * 109.47134 * 210.00515 * 24 22 20 27 27 H 1.48502 * 109.47243 * 330.00258 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 31 31 H 1.08001 * 126.06730 * 0.02562 * 3 2 1 32 32 H 0.97002 * 119.99900 * 180.29376 * 5 4 3 33 33 H 1.08001 * 126.29441 * 0.02562 * 9 8 6 34 34 H 1.09001 * 109.46698 * 270.25209 * 11 10 9 35 35 H 1.09000 * 109.47260 * 30.24886 * 11 10 9 36 36 H 1.09000 * 109.46737 * 150.25165 * 11 10 9 37 37 H 1.09003 * 109.47585 * 270.04417 * 14 13 12 38 38 H 1.09008 * 109.46928 * 210.00044 * 19 18 2 39 39 H 1.08997 * 109.47491 * 329.99795 * 19 18 2 40 40 H 0.96999 * 119.99792 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0027 5 7 4.7732 1.4746 0.0066 6 6 4.6365 2.8153 0.0141 7 8 3.5270 3.3134 0.0171 8 6 5.8317 3.6781 0.0177 9 6 7.1464 3.2570 0.0203 10 7 7.9199 4.3545 0.0208 11 6 9.3849 4.3693 0.0205 12 7 7.0909 5.4817 0.0273 13 6 5.8464 5.0909 0.0255 14 6 4.6362 5.9890 0.0313 15 9 4.9418 7.1877 -0.6221 16 9 3.5803 5.3531 -0.6307 17 7 3.6337 -0.6577 -0.0041 18 7 2.3016 -1.0910 -0.0059 19 6 1.8499 -2.4846 -0.0129 20 6 1.6946 -2.9551 -1.4362 21 1 1.9104 -2.2832 -2.2537 22 6 1.2761 -4.2432 -1.6946 23 7 1.1401 -4.6537 -2.9366 24 14 0.9022 -5.4052 -0.2806 25 1 -0.5286 -5.2810 0.0971 26 1 1.1842 -6.8017 -0.6997 27 1 1.7538 -5.0567 0.8850 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5186 30 1 -0.3633 0.8928 -0.5090 31 1 1.9719 2.1210 0.0004 32 1 5.6582 1.0773 0.0039 33 1 7.4897 2.2329 0.0196 34 1 9.7485 4.3677 1.0481 35 1 9.7571 3.4856 -0.4979 36 1 9.7391 5.2655 -0.4889 37 1 4.3452 6.2001 1.0603 38 1 2.5848 -3.1073 0.4975 39 1 0.8915 -2.5585 0.5009 40 1 0.8459 -5.5599 -3.1184 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000536609574.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:07 Heat of formation + Delta-G solvation = 9.188718 kcal Electronic energy + Delta-G solvation = -28714.603410 eV Core-core repulsion = 24203.464218 eV Total energy + Delta-G solvation = -4511.139192 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.125 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.89539 -47.90535 -42.70907 -42.16673 -40.17243 -36.31004 -35.22465 -34.81759 -33.35812 -32.76061 -31.67358 -29.52475 -28.95565 -27.85243 -26.74153 -24.83526 -23.85296 -22.50163 -21.53030 -21.11372 -20.64615 -19.20842 -18.88027 -18.49030 -17.92561 -17.69758 -17.42825 -17.00865 -16.80993 -16.67949 -16.39538 -15.96254 -15.49905 -15.30227 -14.88648 -14.85305 -14.47323 -14.43831 -14.13215 -13.96098 -13.81550 -13.71170 -13.61731 -13.55657 -13.46590 -13.20535 -12.80578 -12.53464 -12.48818 -12.23553 -12.11110 -11.82134 -11.53004 -11.37038 -10.88032 -10.84411 -10.78368 -9.99332 -9.54245 -9.04137 -8.38571 -6.49728 0.28455 0.57400 1.07653 1.13246 1.34162 1.37212 1.43524 1.50802 1.81454 2.28625 2.33181 2.49672 2.61435 2.93899 3.04404 3.32187 3.64602 3.80413 3.92539 3.95543 4.09889 4.13314 4.19522 4.43015 4.47793 4.54714 4.57761 4.72340 4.79387 4.82908 4.84654 4.91463 5.04430 5.16046 5.25527 5.29836 5.67687 5.91090 6.03438 6.14520 6.33034 6.40451 6.54867 7.01190 7.14384 7.17038 8.78201 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019128 B = 0.002539 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.492004 B =11026.930634 C =11994.462461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.089 3.911 3 C -0.297 4.297 4 C 0.280 3.720 5 N -0.619 5.619 6 C 0.593 3.407 7 O -0.527 6.527 8 C -0.286 4.286 9 C 0.134 3.866 10 N -0.343 5.343 11 C 0.081 3.919 12 N -0.282 5.282 13 C 0.041 3.959 14 C 0.348 3.652 15 F -0.204 7.204 16 F -0.180 7.180 17 N -0.353 5.353 18 N -0.344 5.344 19 C 0.242 3.758 20 C -0.550 4.550 21 H 0.023 0.977 22 C 0.021 3.979 23 N -0.939 5.939 24 Si 0.951 3.049 25 H -0.251 1.251 26 H -0.279 1.279 27 H -0.243 1.243 28 H 0.102 0.898 29 H 0.067 0.933 30 H 0.096 0.904 31 H 0.167 0.833 32 H 0.423 0.577 33 H 0.238 0.762 34 H 0.104 0.896 35 H 0.129 0.871 36 H 0.098 0.902 37 H 0.161 0.839 38 H 0.051 0.949 39 H 0.071 0.929 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.097 17.985 11.810 26.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 C -0.328 4.328 4 C 0.025 3.975 5 N -0.268 5.268 6 C 0.382 3.618 7 O -0.402 6.402 8 C -0.301 4.301 9 C -0.018 4.018 10 N -0.120 5.120 11 C -0.057 4.057 12 N -0.105 5.105 13 C -0.127 4.127 14 C 0.293 3.707 15 F -0.185 7.185 16 F -0.161 7.161 17 N -0.184 5.184 18 N -0.126 5.126 19 C 0.122 3.878 20 C -0.588 4.588 21 H 0.041 0.959 22 C -0.179 4.179 23 N -0.577 5.577 24 Si 0.772 3.228 25 H -0.175 1.175 26 H -0.204 1.204 27 H -0.166 1.166 28 H 0.120 0.880 29 H 0.086 0.914 30 H 0.115 0.885 31 H 0.184 0.816 32 H 0.261 0.739 33 H 0.254 0.746 34 H 0.122 0.878 35 H 0.147 0.853 36 H 0.117 0.883 37 H 0.178 0.822 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 15.934 18.105 11.658 26.788 hybrid contribution -0.658 -0.888 -0.465 1.199 sum 15.277 17.217 11.193 25.595 Atomic orbital electron populations 1.20539 0.85353 1.04325 1.04452 1.21735 0.96655 0.86429 0.99273 1.21482 0.90104 1.00030 1.21145 1.19218 0.88675 0.89142 1.00426 1.42242 1.06861 1.04535 1.73187 1.17487 0.88673 0.80179 0.75492 1.90797 1.26935 1.73636 1.48832 1.19725 0.93126 0.92037 1.25250 1.23821 0.88612 0.95693 0.93707 1.48842 1.08942 1.02582 1.51676 1.22623 0.69602 1.07288 1.06196 1.77143 0.99951 1.09608 1.23770 1.22968 0.94368 0.93645 1.01712 1.19814 0.80387 0.75402 0.95127 1.92997 1.93576 1.47369 1.84562 1.93169 1.57339 1.81902 1.83692 1.77147 0.99654 1.09802 1.31756 1.48414 1.01919 1.06998 1.55284 1.19755 0.96430 0.74674 0.96893 1.21272 1.47629 0.98703 0.91232 0.95883 1.25847 0.93742 0.99301 0.98990 1.70042 1.47002 1.19214 1.21464 0.85672 0.80483 0.77611 0.79025 1.17548 1.20432 1.16586 0.87989 0.91418 0.88481 0.81573 0.73933 0.74607 0.87785 0.85268 0.88304 0.82210 0.93116 0.91084 0.91764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.85 9.89 71.24 0.70 -2.15 16 2 C 0.09 3.64 6.92 41.38 0.29 3.93 16 3 C -0.30 -11.99 9.52 22.11 0.21 -11.78 16 4 C 0.28 11.01 8.11 133.34 1.08 12.09 16 5 N -0.62 -17.88 5.44 -310.47 -1.69 -19.57 16 6 C 0.59 17.06 7.74 86.66 0.67 17.73 16 7 O -0.53 -18.53 10.38 -4.08 -0.04 -18.57 16 8 C -0.29 -6.22 6.09 -20.15 -0.12 -6.34 16 9 C 0.13 1.66 10.99 84.28 0.93 2.59 16 10 N -0.34 -4.31 3.98 -367.74 -1.46 -5.78 16 11 C 0.08 0.18 11.44 127.77 1.46 1.64 16 12 N -0.28 -5.81 12.43 -46.68 -0.58 -6.39 16 13 C 0.04 0.95 6.89 43.52 0.30 1.25 16 14 C 0.35 8.01 5.66 71.24 0.40 8.41 16 15 F -0.20 -5.03 17.27 44.97 0.78 -4.25 16 16 F -0.18 -5.46 13.58 44.97 0.61 -4.85 16 17 N -0.35 -15.80 12.59 -54.47 -0.69 -16.49 16 18 N -0.34 -15.84 3.59 -338.45 -1.22 -17.06 16 19 C 0.24 11.45 4.88 85.63 0.42 11.87 16 20 C -0.55 -31.49 9.94 25.60 0.25 -31.24 16 21 H 0.02 1.54 8.06 -2.91 -0.02 1.51 16 22 C 0.02 1.16 5.47 84.66 0.46 1.62 16 23 N -0.94 -57.10 13.96 21.45 0.30 -56.80 16 24 Si 0.95 40.44 27.47 68.60 1.88 42.32 16 25 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 26 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 27 H -0.24 -9.45 6.54 99.48 0.65 -8.79 16 28 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 29 H 0.07 2.39 7.71 -2.39 -0.02 2.37 16 30 H 0.10 2.73 8.14 -2.38 -0.02 2.72 16 31 H 0.17 6.59 5.91 -2.91 -0.02 6.57 16 32 H 0.42 8.75 7.75 -92.71 -0.72 8.03 16 33 H 0.24 0.58 7.46 -2.91 -0.02 0.56 16 34 H 0.10 -0.09 8.14 -2.39 -0.02 -0.11 16 35 H 0.13 -0.47 8.14 -2.39 -0.02 -0.49 16 36 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.16 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.05 2.36 7.20 -2.38 -0.02 2.35 16 39 H 0.07 2.97 7.07 -2.39 -0.02 2.95 16 40 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -85.77 353.29 5.30 -80.48 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.34 Total: 17.32 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: 7.06 Total: 9.63 kcal Atomic # 7 Polarization: -116.74 SS G_CDS: -5.33 Total: -122.07 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.04 Total: -18.57 kcal Atomic # 9 Polarization: -10.49 SS G_CDS: 1.39 Total: -9.10 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 1.88 Total: 42.32 kcal Total: -85.77 5.30 -80.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000536609574.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.666 kcal (2) G-P(sol) polarization free energy of solvation -85.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds