Wall clock time and date at job start Sat Apr 11 2020 05:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38267 * 119.99756 * 2 1 4 4 C 1.38214 * 119.99618 * 180.20837 * 3 2 1 5 5 C 1.38253 * 120.00302 * 359.85381 * 4 3 2 6 6 C 1.38212 * 119.99898 * 359.95827 * 5 4 3 7 7 C 1.38218 * 120.00425 * 179.80782 * 2 1 3 8 8 C 1.50699 * 119.99796 * 0.02562 * 7 2 1 9 9 H 1.09001 * 109.47137 * 324.72698 * 8 7 2 10 10 C 1.52995 * 109.46944 * 84.72412 * 8 7 2 11 11 O 1.42908 * 109.47284 * 55.00192 * 10 8 7 12 12 N 1.46500 * 109.47072 * 204.72421 * 8 7 2 13 13 S 1.65598 * 119.99682 * 144.99809 * 12 8 7 14 14 O 1.42105 * 104.28102 * 308.93026 * 13 12 8 15 15 O 1.42104 * 104.27588 * 181.07410 * 13 12 8 16 16 C 1.81397 * 104.44968 * 65.00521 * 13 12 8 17 17 C 1.52998 * 109.47152 * 174.82771 * 16 13 12 18 18 C 1.50701 * 115.54950 * 295.20017 * 17 16 13 19 19 H 1.07997 * 120.00219 * 95.16657 * 18 17 16 20 20 C 1.37885 * 119.99573 * 274.89197 * 18 17 16 21 21 N 1.31512 * 120.00257 * 6.45022 * 20 18 17 22 22 Si 1.86803 * 119.99468 * 186.45254 * 20 18 17 23 23 H 1.48496 * 109.47376 * 90.00266 * 22 20 18 24 24 H 1.48502 * 109.46802 * 209.99906 * 22 20 18 25 25 H 1.48501 * 109.47203 * 329.99779 * 22 20 18 26 26 C 1.53002 * 117.50079 * 80.87072 * 17 16 13 27 27 C 1.53005 * 117.50151 * 149.53091 * 17 16 13 28 28 H 1.08998 * 109.47489 * 270.18980 * 1 2 3 29 29 H 1.08997 * 109.47214 * 30.19319 * 1 2 3 30 30 H 1.09001 * 109.46564 * 150.18930 * 1 2 3 31 31 H 1.07993 * 120.00205 * 0.03620 * 3 2 1 32 32 H 1.08002 * 119.99589 * 179.82747 * 4 3 2 33 33 H 1.08007 * 119.99887 * 179.97438 * 5 4 3 34 34 H 1.08001 * 119.99740 * 180.02562 * 6 5 4 35 35 H 1.09008 * 109.46946 * 174.99917 * 10 8 7 36 36 H 1.09002 * 109.47747 * 295.00170 * 10 8 7 37 37 H 0.96700 * 114.00163 * 179.97438 * 11 10 8 38 38 H 0.97000 * 120.00203 * 325.00257 * 12 8 7 39 39 H 1.08993 * 109.47368 * 54.82184 * 16 13 12 40 40 H 1.09002 * 109.46923 * 294.82324 * 16 13 12 41 41 H 0.96998 * 119.99473 * 185.04183 * 21 20 18 42 42 H 1.08999 * 117.50085 * 214.99994 * 26 17 16 43 43 H 1.09004 * 117.49756 * 0.02562 * 26 17 16 44 44 H 1.09006 * 117.49142 * 359.97438 * 27 17 16 45 45 H 1.08999 * 117.50088 * 144.97172 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5804 1.1974 -0.0044 5 6 4.2717 0.0001 -0.0057 6 6 3.5806 -1.1968 -0.0017 7 6 2.1981 -1.1969 0.0040 8 6 1.4447 -2.5021 0.0078 9 1 0.5362 -2.3954 0.6006 10 6 1.0754 -2.8819 -1.4275 11 8 2.2561 -2.9079 -2.2322 12 7 2.2869 -3.5504 0.5891 13 16 1.6028 -4.7504 1.5025 14 8 0.8098 -4.0564 2.4559 15 8 2.7035 -5.5517 1.9095 16 6 0.5491 -5.6598 0.3393 17 6 -0.0454 -6.8836 1.0392 18 6 0.9477 -7.9312 1.4719 19 1 1.3321 -7.9268 2.4812 20 6 1.3614 -8.8987 0.5808 21 7 0.9897 -8.8345 -0.6791 22 14 2.4499 -10.3007 1.1633 23 1 1.6006 -11.4322 1.6145 24 1 3.3194 -10.7492 0.0461 25 1 3.2950 -9.8351 2.2921 26 6 -1.2718 -6.6632 1.9271 27 6 -1.4217 -7.3641 0.5745 28 1 -0.3634 0.0034 1.0276 29 1 -0.3633 0.8882 -0.5168 30 1 -0.3632 -0.8917 -0.5109 31 1 1.6583 2.1327 0.0006 32 1 4.1203 2.1328 -0.0072 33 1 5.3517 0.0002 -0.0095 34 1 4.1207 -2.1321 -0.0023 35 1 0.6094 -3.8673 -1.4341 36 1 0.3777 -2.1473 -1.8298 37 1 2.0969 -3.1424 -3.1567 38 1 3.2451 -3.5416 0.4390 39 1 1.1449 -5.9831 -0.5142 40 1 -0.2564 -5.0111 -0.0048 41 1 1.2192 -9.5525 -1.2895 42 1 -1.3603 -7.2760 2.8242 43 1 -1.6553 -5.6465 2.0123 44 1 -1.9038 -6.8080 -0.2296 45 1 -1.6087 -8.4379 0.5814 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575751091.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:27 Heat of formation + Delta-G solvation = -71.849822 kcal Electronic energy + Delta-G solvation = -28545.093688 eV Core-core repulsion = 24655.528381 eV Total energy + Delta-G solvation = -3889.565308 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.95086 -37.22427 -36.78114 -36.24291 -35.12296 -34.76092 -32.99610 -32.03173 -30.64033 -28.49599 -27.91607 -26.97519 -25.45579 -23.46469 -21.83722 -21.25873 -20.61487 -19.72110 -18.70127 -17.70272 -17.17226 -16.59433 -16.38306 -15.79436 -15.21871 -15.08367 -14.96119 -14.71119 -14.53287 -14.20067 -13.98617 -13.82977 -13.35656 -13.13957 -13.09135 -12.87808 -12.42149 -12.09922 -11.97558 -11.84393 -11.81696 -11.37294 -11.31886 -11.19010 -11.05897 -11.00954 -10.91800 -10.89571 -10.58634 -10.49429 -10.13971 -9.97307 -9.75052 -9.32387 -8.97276 -8.79730 -8.58910 -8.54966 -8.12908 -6.14136 -4.22895 1.04353 1.31777 1.39282 3.30352 3.36249 3.37529 3.45957 3.72773 4.17625 4.39358 4.51968 4.55159 4.75707 4.85445 4.91495 5.00806 5.09555 5.11835 5.15274 5.16337 5.26045 5.31264 5.42828 5.49847 5.52545 5.58119 5.71052 5.73141 5.85260 5.98177 6.03971 6.13618 6.21102 6.32741 6.45473 6.48962 6.56826 6.64314 6.66632 6.94569 6.97617 7.20021 7.30068 7.35764 7.61766 7.82300 8.19284 8.83677 9.48156 10.94349 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018071 B = 0.003645 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.106724 B = 7680.921488 C = 8031.305313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.082 4.082 3 C -0.122 4.122 4 C -0.121 4.121 5 C -0.126 4.126 6 C -0.088 4.088 7 C -0.070 4.070 8 C 0.190 3.810 9 H 0.112 0.888 10 C 0.054 3.946 11 O -0.558 6.558 12 N -1.119 6.119 13 S 2.602 3.398 14 O -0.977 6.977 15 O -0.941 6.941 16 C -0.555 4.555 17 C 0.042 3.958 18 C -0.507 4.507 19 H 0.070 0.930 20 C 0.080 3.920 21 N -0.877 5.877 22 Si 0.890 3.110 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.267 1.267 26 C -0.214 4.214 27 C -0.138 4.138 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.378 0.622 38 H 0.414 0.586 39 H 0.136 0.864 40 H 0.096 0.904 41 H 0.262 0.738 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.271 17.780 -4.697 18.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.082 4.082 3 C -0.140 4.140 4 C -0.139 4.139 5 C -0.144 4.144 6 C -0.106 4.106 7 C -0.072 4.072 8 C 0.082 3.918 9 H 0.129 0.871 10 C -0.026 4.026 11 O -0.363 6.363 12 N -0.876 5.876 13 S 2.699 3.301 14 O -0.967 6.967 15 O -0.931 6.931 16 C -0.688 4.688 17 C 0.040 3.960 18 C -0.544 4.544 19 H 0.088 0.912 20 C -0.125 4.125 21 N -0.512 5.512 22 Si 0.717 3.283 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.191 1.191 26 C -0.251 4.251 27 C -0.177 4.177 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.224 0.776 38 H 0.250 0.750 39 H 0.155 0.845 40 H 0.114 0.886 41 H 0.071 0.929 42 H 0.106 0.894 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.079 17.765 -3.342 18.077 hybrid contribution 0.426 -1.029 -1.258 1.681 sum 0.504 16.736 -4.601 17.364 Atomic orbital electron populations 1.20940 0.91324 1.02884 1.02949 1.19695 0.95958 0.92479 1.00083 1.20925 0.94245 0.97108 1.01746 1.21085 0.94302 0.97899 1.00646 1.21101 0.99809 0.92445 1.01075 1.20878 0.93568 0.98113 0.98069 1.19550 0.94040 0.93171 1.00403 1.19749 0.93997 0.85483 0.92586 0.87056 1.22900 0.87807 1.00671 0.91239 1.86503 1.32183 1.93231 1.24371 1.56068 1.18403 1.41325 1.71801 1.05291 0.75818 0.73281 0.75718 1.93502 1.72473 1.72654 1.58108 1.93576 1.50908 1.68529 1.80129 1.30097 1.13146 1.09661 1.15864 1.18314 0.88085 0.92311 0.97282 1.20559 1.24187 1.11406 0.98215 0.91167 1.24926 0.95220 0.97959 0.94361 1.70005 1.46186 1.32060 1.02987 0.86597 0.80752 0.82010 0.78967 1.20535 1.21084 1.19081 1.23255 1.06147 1.00246 0.95478 1.22529 1.01241 0.99534 0.94439 0.90540 0.91323 0.91336 0.86208 0.86358 0.86181 0.85907 0.91996 0.92593 0.77587 0.75029 0.84547 0.88599 0.92871 0.89435 0.90671 0.91574 0.89506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 9.22 36.00 0.33 -0.81 16 2 C -0.08 -0.94 5.88 -104.62 -0.62 -1.56 16 3 C -0.12 -1.27 9.70 -39.58 -0.38 -1.66 16 4 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 5 C -0.13 -1.43 10.05 -39.59 -0.40 -1.82 16 6 C -0.09 -1.14 9.03 -39.59 -0.36 -1.50 16 7 C -0.07 -0.92 4.65 -104.62 -0.49 -1.41 16 8 C 0.19 2.59 2.12 -69.09 -0.15 2.45 16 9 H 0.11 1.47 6.34 -51.93 -0.33 1.14 16 10 C 0.05 0.62 6.70 37.15 0.25 0.87 16 11 O -0.56 -6.59 12.87 -35.23 -0.45 -7.04 16 12 N -1.12 -17.86 5.17 -5.88 -0.03 -17.89 16 13 S 2.60 52.70 5.32 -107.50 -0.57 52.13 16 14 O -0.98 -21.15 17.39 -57.54 -1.00 -22.15 16 15 O -0.94 -22.80 17.13 -57.54 -0.99 -23.79 16 16 C -0.55 -11.28 4.78 37.16 0.18 -11.10 16 17 C 0.04 1.01 1.34 -155.66 -0.21 0.80 16 18 C -0.51 -13.74 7.68 -34.44 -0.26 -14.01 16 19 H 0.07 1.97 7.82 -52.49 -0.41 1.56 16 20 C 0.08 2.16 5.39 -17.82 -0.10 2.06 16 21 N -0.88 -23.79 12.93 55.43 0.72 -23.07 16 22 Si 0.89 21.38 29.55 -169.99 -5.02 16.36 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 26 C -0.21 -4.57 9.96 -26.69 -0.27 -4.84 16 27 C -0.14 -3.06 9.44 -26.69 -0.25 -3.31 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 30 H 0.07 0.59 5.36 -51.93 -0.28 0.31 16 31 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 32 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 34 H 0.12 1.56 6.08 -52.49 -0.32 1.24 16 35 H 0.06 0.74 5.90 -51.92 -0.31 0.43 16 36 H 0.06 0.52 6.80 -51.93 -0.35 0.17 16 37 H 0.38 2.96 9.12 45.56 0.42 3.38 16 38 H 0.41 6.22 6.52 -34.47 -0.22 5.99 16 39 H 0.14 2.89 8.14 -51.93 -0.42 2.47 16 40 H 0.10 1.60 7.17 -51.92 -0.37 1.23 16 41 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 42 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 43 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 44 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.09 2.04 8.14 -51.93 -0.42 1.62 16 LS Contribution 378.19 15.07 5.70 5.70 Total: -1.00 -34.10 378.19 -10.30 -44.40 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -5.54 Total: 12.82 kcal Atomic # 6 Polarization: -34.37 SS G_CDS: -3.11 Total: -37.48 kcal Atomic # 7 Polarization: -41.65 SS G_CDS: 0.69 Total: -40.96 kcal Atomic # 8 Polarization: -50.53 SS G_CDS: -2.44 Total: -52.97 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 52.70 SS G_CDS: -0.57 Total: 52.13 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.10 -10.30 -44.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575751091.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.448 kcal (2) G-P(sol) polarization free energy of solvation -34.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds