Wall clock time and date at job start Sat Apr 11 2020 05:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38267 * 119.99756 * 2 1 4 4 C 1.38214 * 119.99618 * 180.20837 * 3 2 1 5 5 C 1.38253 * 120.00302 * 359.85381 * 4 3 2 6 6 C 1.38212 * 119.99898 * 359.95827 * 5 4 3 7 7 C 1.38218 * 120.00425 * 179.80782 * 2 1 3 8 8 C 1.50699 * 119.99796 * 0.02562 * 7 2 1 9 9 H 1.09001 * 109.47137 * 324.72698 * 8 7 2 10 10 C 1.52995 * 109.46944 * 84.72412 * 8 7 2 11 11 O 1.42908 * 109.47284 * 55.00192 * 10 8 7 12 12 N 1.46500 * 109.47072 * 204.72421 * 8 7 2 13 13 S 1.65598 * 119.99682 * 144.99809 * 12 8 7 14 14 O 1.42105 * 104.28102 * 308.93026 * 13 12 8 15 15 O 1.42104 * 104.27588 * 181.07410 * 13 12 8 16 16 C 1.81397 * 104.44968 * 65.00521 * 13 12 8 17 17 C 1.52998 * 109.47152 * 174.82771 * 16 13 12 18 18 C 1.50701 * 115.54950 * 295.20017 * 17 16 13 19 19 H 1.07997 * 120.00219 * 95.16657 * 18 17 16 20 20 C 1.37885 * 119.99573 * 274.89197 * 18 17 16 21 21 N 1.31512 * 120.00257 * 6.45022 * 20 18 17 22 22 Si 1.86803 * 119.99468 * 186.45254 * 20 18 17 23 23 H 1.48496 * 109.47376 * 90.00266 * 22 20 18 24 24 H 1.48502 * 109.46802 * 209.99906 * 22 20 18 25 25 H 1.48501 * 109.47203 * 329.99779 * 22 20 18 26 26 C 1.53002 * 117.50079 * 80.87072 * 17 16 13 27 27 C 1.53005 * 117.50151 * 149.53091 * 17 16 13 28 28 H 1.08998 * 109.47489 * 270.18980 * 1 2 3 29 29 H 1.08997 * 109.47214 * 30.19319 * 1 2 3 30 30 H 1.09001 * 109.46564 * 150.18930 * 1 2 3 31 31 H 1.07993 * 120.00205 * 0.03620 * 3 2 1 32 32 H 1.08002 * 119.99589 * 179.82747 * 4 3 2 33 33 H 1.08007 * 119.99887 * 179.97438 * 5 4 3 34 34 H 1.08001 * 119.99740 * 180.02562 * 6 5 4 35 35 H 1.09008 * 109.46946 * 174.99917 * 10 8 7 36 36 H 1.09002 * 109.47747 * 295.00170 * 10 8 7 37 37 H 0.96700 * 114.00163 * 179.97438 * 11 10 8 38 38 H 0.97000 * 120.00203 * 325.00257 * 12 8 7 39 39 H 1.08993 * 109.47368 * 54.82184 * 16 13 12 40 40 H 1.09002 * 109.46923 * 294.82324 * 16 13 12 41 41 H 0.96998 * 119.99473 * 185.04183 * 21 20 18 42 42 H 1.08999 * 117.50085 * 214.99994 * 26 17 16 43 43 H 1.09004 * 117.49756 * 0.02562 * 26 17 16 44 44 H 1.09006 * 117.49142 * 359.97438 * 27 17 16 45 45 H 1.08999 * 117.50088 * 144.97172 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5804 1.1974 -0.0044 5 6 4.2717 0.0001 -0.0057 6 6 3.5806 -1.1968 -0.0017 7 6 2.1981 -1.1969 0.0040 8 6 1.4447 -2.5021 0.0078 9 1 0.5362 -2.3954 0.6006 10 6 1.0754 -2.8819 -1.4275 11 8 2.2561 -2.9079 -2.2322 12 7 2.2869 -3.5504 0.5891 13 16 1.6028 -4.7504 1.5025 14 8 0.8098 -4.0564 2.4559 15 8 2.7035 -5.5517 1.9095 16 6 0.5491 -5.6598 0.3393 17 6 -0.0454 -6.8836 1.0392 18 6 0.9477 -7.9312 1.4719 19 1 1.3321 -7.9268 2.4812 20 6 1.3614 -8.8987 0.5808 21 7 0.9897 -8.8345 -0.6791 22 14 2.4499 -10.3007 1.1633 23 1 1.6006 -11.4322 1.6145 24 1 3.3194 -10.7492 0.0461 25 1 3.2950 -9.8351 2.2921 26 6 -1.2718 -6.6632 1.9271 27 6 -1.4217 -7.3641 0.5745 28 1 -0.3634 0.0034 1.0276 29 1 -0.3633 0.8882 -0.5168 30 1 -0.3632 -0.8917 -0.5109 31 1 1.6583 2.1327 0.0006 32 1 4.1203 2.1328 -0.0072 33 1 5.3517 0.0002 -0.0095 34 1 4.1207 -2.1321 -0.0023 35 1 0.6094 -3.8673 -1.4341 36 1 0.3777 -2.1473 -1.8298 37 1 2.0969 -3.1424 -3.1567 38 1 3.2451 -3.5416 0.4390 39 1 1.1449 -5.9831 -0.5142 40 1 -0.2564 -5.0111 -0.0048 41 1 1.2192 -9.5525 -1.2895 42 1 -1.3603 -7.2760 2.8242 43 1 -1.6553 -5.6465 2.0123 44 1 -1.9038 -6.8080 -0.2296 45 1 -1.6087 -8.4379 0.5814 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575751091.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:26 Heat of formation + Delta-G solvation = -96.730505 kcal Electronic energy + Delta-G solvation = -28546.172596 eV Core-core repulsion = 24655.528381 eV Total energy + Delta-G solvation = -3890.644215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.82611 -38.57681 -38.18387 -37.88105 -36.83104 -35.82148 -34.06011 -33.80732 -31.60902 -30.00152 -29.03355 -27.74584 -27.45632 -24.36538 -22.99851 -22.74027 -21.56771 -21.42420 -20.21807 -18.91108 -18.41256 -18.13999 -17.76157 -16.93794 -16.68173 -16.63013 -16.21841 -16.00622 -15.68927 -15.60696 -15.21107 -14.97406 -14.74829 -14.20553 -13.92657 -13.87207 -13.75070 -13.62118 -13.20062 -13.12894 -12.95542 -12.94719 -12.88935 -12.84133 -12.80110 -12.62542 -12.43705 -12.20900 -11.90771 -11.87485 -11.79192 -11.57383 -10.88034 -10.81151 -10.61179 -10.50965 -9.88959 -9.64902 -9.42732 -8.18777 -6.30750 -0.54324 0.46589 0.54454 1.37255 1.40513 1.51265 1.94142 2.41464 2.87526 2.93266 3.09398 3.30073 3.34858 3.44329 3.62456 3.96626 3.99136 4.07423 4.12699 4.17697 4.20776 4.32490 4.38018 4.46588 4.54798 4.58985 4.63414 4.65327 4.79406 4.84864 4.87219 4.97821 4.99540 5.01570 5.17959 5.22566 5.37140 5.47186 5.60543 5.63935 5.66142 5.74106 5.75235 6.04879 6.16985 6.23891 6.75006 6.93922 7.40916 8.88873 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018071 B = 0.003645 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.106724 B = 7680.921488 C = 8031.305313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.091 4.091 3 C -0.125 4.125 4 C -0.123 4.123 5 C -0.137 4.137 6 C -0.112 4.112 7 C -0.089 4.089 8 C 0.181 3.819 9 H 0.116 0.884 10 C 0.054 3.946 11 O -0.575 6.575 12 N -1.109 6.109 13 S 2.616 3.384 14 O -0.994 6.994 15 O -0.991 6.991 16 C -0.546 4.546 17 C 0.007 3.993 18 C -0.524 4.524 19 H 0.046 0.954 20 C 0.042 3.958 21 N -0.891 5.891 22 Si 0.931 3.069 23 H -0.268 1.268 24 H -0.277 1.277 25 H -0.279 1.279 26 C -0.202 4.202 27 C -0.132 4.132 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.134 0.866 34 H 0.113 0.887 35 H 0.059 0.941 36 H 0.085 0.915 37 H 0.394 0.606 38 H 0.417 0.583 39 H 0.126 0.874 40 H 0.135 0.865 41 H 0.264 0.736 42 H 0.082 0.918 43 H 0.102 0.898 44 H 0.091 0.909 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.301 19.920 -5.769 20.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.091 4.091 3 C -0.143 4.143 4 C -0.140 4.140 5 C -0.155 4.155 6 C -0.131 4.131 7 C -0.090 4.090 8 C 0.073 3.927 9 H 0.133 0.867 10 C -0.025 4.025 11 O -0.382 6.382 12 N -0.869 5.869 13 S 2.714 3.286 14 O -0.984 6.984 15 O -0.981 6.981 16 C -0.679 4.679 17 C 0.005 3.995 18 C -0.562 4.562 19 H 0.064 0.936 20 C -0.160 4.160 21 N -0.527 5.527 22 Si 0.757 3.243 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.204 1.204 26 C -0.240 4.240 27 C -0.171 4.171 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.164 0.836 32 H 0.162 0.838 33 H 0.152 0.848 34 H 0.131 0.869 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.243 0.757 38 H 0.254 0.746 39 H 0.144 0.856 40 H 0.153 0.847 41 H 0.073 0.927 42 H 0.101 0.899 43 H 0.120 0.880 44 H 0.110 0.890 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.959 19.897 -4.424 20.405 hybrid contribution 0.763 -1.589 -0.928 1.992 sum -0.196 18.307 -5.352 19.075 Atomic orbital electron populations 1.21024 0.89756 1.04233 1.03341 1.20009 0.97291 0.92224 0.99603 1.21303 0.94525 0.97825 1.00673 1.21449 0.94669 0.98514 0.99414 1.21352 1.00763 0.92395 1.00983 1.20983 0.93995 0.98530 0.99544 1.19601 0.94132 0.93413 1.01869 1.20053 0.93713 0.85132 0.93765 0.86690 1.22890 0.88117 1.01277 0.90238 1.86470 1.32628 1.93374 1.25725 1.55662 1.18772 1.40878 1.71574 1.04576 0.75027 0.73150 0.75812 1.93469 1.72766 1.72863 1.59272 1.93506 1.52746 1.70319 1.81511 1.29930 1.14138 1.08968 1.14853 1.18432 0.88331 0.93211 0.99509 1.20703 1.25164 1.12983 0.97325 0.93554 1.25443 0.96278 0.99608 0.94687 1.70036 1.46947 1.32537 1.03215 0.85962 0.79620 0.80389 0.78347 1.19370 1.20230 1.20393 1.23317 1.04192 1.01488 0.94954 1.22495 1.00114 0.98825 0.95694 0.90554 0.89203 0.90841 0.83605 0.83778 0.84761 0.86872 0.92336 0.89730 0.75718 0.74558 0.85559 0.84670 0.92692 0.89921 0.88022 0.89020 0.91534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 9.22 71.23 0.66 -1.32 16 2 C -0.09 -1.89 5.88 -19.86 -0.12 -2.01 16 3 C -0.13 -2.27 9.70 22.27 0.22 -2.05 16 4 C -0.12 -2.23 10.05 22.27 0.22 -2.01 16 5 C -0.14 -2.94 10.05 22.27 0.22 -2.71 16 6 C -0.11 -2.87 9.03 22.27 0.20 -2.67 16 7 C -0.09 -2.22 4.65 -19.87 -0.09 -2.31 16 8 C 0.18 4.69 2.12 44.24 0.09 4.79 16 9 H 0.12 2.85 6.34 -2.39 -0.02 2.83 16 10 C 0.05 1.16 6.70 71.98 0.48 1.64 16 11 O -0.57 -12.80 12.87 -148.98 -1.92 -14.72 16 12 N -1.11 -35.33 5.17 -172.53 -0.89 -36.22 16 13 S 2.62 106.49 5.32 -56.49 -0.30 106.19 16 14 O -0.99 -42.63 17.39 -127.65 -2.22 -44.85 16 15 O -0.99 -49.64 17.13 -127.65 -2.19 -51.82 16 16 C -0.55 -21.71 4.78 71.98 0.34 -21.36 16 17 C 0.01 0.35 1.34 -52.93 -0.07 0.28 16 18 C -0.52 -28.98 7.68 25.60 0.20 -28.79 16 19 H 0.05 2.70 7.82 -2.91 -0.02 2.68 16 20 C 0.04 2.31 5.39 84.66 0.46 2.77 16 21 N -0.89 -48.40 12.93 21.45 0.28 -48.12 16 22 Si 0.93 44.30 29.55 68.60 2.03 46.32 16 23 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 24 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 25 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 26 C -0.20 -8.39 9.96 30.62 0.30 -8.08 16 27 C -0.13 -5.68 9.44 30.62 0.29 -5.39 16 28 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.09 0.99 8.09 -2.39 -0.02 0.97 16 30 H 0.07 1.04 5.36 -2.39 -0.01 1.03 16 31 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 32 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 33 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 34 H 0.11 2.97 6.08 -2.91 -0.02 2.95 16 35 H 0.06 1.27 5.90 -2.38 -0.01 1.26 16 36 H 0.08 1.32 6.80 -2.39 -0.02 1.30 16 37 H 0.39 5.56 9.12 -74.06 -0.68 4.89 16 38 H 0.42 12.87 6.52 -96.75 -0.63 12.24 16 39 H 0.13 5.32 8.14 -2.39 -0.02 5.30 16 40 H 0.14 4.17 7.17 -2.39 -0.02 4.15 16 41 H 0.26 13.67 8.32 -92.71 -0.77 12.90 16 42 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 43 H 0.10 3.65 8.14 -2.38 -0.02 3.63 16 44 H 0.09 3.42 8.14 -2.38 -0.02 3.40 16 45 H 0.07 3.10 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -73.75 378.19 -2.08 -75.84 By element: Atomic # 1 Polarization: 36.90 SS G_CDS: -0.28 Total: 36.62 kcal Atomic # 6 Polarization: -72.63 SS G_CDS: 3.41 Total: -69.23 kcal Atomic # 7 Polarization: -83.73 SS G_CDS: -0.62 Total: -84.34 kcal Atomic # 8 Polarization: -105.07 SS G_CDS: -6.32 Total: -111.40 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: 106.49 SS G_CDS: -0.30 Total: 106.19 kcal Total: -73.75 -2.08 -75.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575751091.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.894 kcal (2) G-P(sol) polarization free energy of solvation -73.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds