Wall clock time and date at job start Sat Apr 11 2020 05:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 113.00101 * 2 1 4 4 S 1.81402 * 109.46711 * 50.33893 * 3 2 1 5 5 O 1.42094 * 110.54404 * 68.37680 * 4 3 2 6 6 O 1.42103 * 110.54318 * 291.61982 * 4 3 2 7 7 N 1.65600 * 104.44646 * 180.02562 * 4 3 2 8 8 C 1.46494 * 120.00386 * 64.99936 * 7 4 3 9 9 H 1.09000 * 109.47081 * 335.00092 * 8 7 4 10 10 C 1.53001 * 109.47302 * 215.00013 * 8 7 4 11 11 C 1.50701 * 109.47232 * 64.99671 * 10 8 7 12 12 H 1.08001 * 119.99717 * 0.02562 * 11 10 8 13 13 C 1.37876 * 119.99813 * 179.97438 * 11 10 8 14 14 N 1.31516 * 119.99578 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 120.00242 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.47103 * 89.99714 * 15 13 11 17 17 H 1.48504 * 109.47065 * 209.99608 * 15 13 11 18 18 H 1.48497 * 109.47228 * 329.99836 * 15 13 11 19 19 C 1.50703 * 109.47581 * 94.99788 * 8 7 4 20 20 C 1.38235 * 120.00292 * 220.00303 * 19 8 7 21 21 C 1.38230 * 119.99899 * 179.97438 * 20 19 8 22 22 C 1.38235 * 120.00326 * 359.95697 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99503 * 39.97596 * 19 8 7 25 25 C 1.54031 * 113.82012 * 131.83037 * 2 1 3 26 26 O 1.44450 * 85.42634 * 91.80528 * 25 2 1 27 27 C 1.44185 * 93.37624 * 24.09131 * 26 25 2 28 28 H 1.08992 * 109.47043 * 59.99218 * 1 2 3 29 29 H 1.09000 * 109.46848 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47007 * 299.99547 * 1 2 3 31 31 H 1.08993 * 109.47513 * 290.33758 * 3 2 1 32 32 H 1.09000 * 109.46977 * 170.33652 * 3 2 1 33 33 H 0.97010 * 119.99996 * 244.99683 * 7 4 3 34 34 H 1.09007 * 109.47213 * 184.99910 * 10 8 7 35 35 H 1.08998 * 109.47120 * 304.99384 * 10 8 7 36 36 H 0.97007 * 120.00057 * 180.02562 * 14 13 11 37 37 H 1.08001 * 119.99730 * 359.97438 * 20 19 8 38 38 H 1.08000 * 120.00376 * 179.97438 * 21 20 19 39 39 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 40 40 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 41 41 H 1.07997 * 120.00455 * 0.02562 * 24 19 8 42 42 H 1.08998 * 113.86646 * 205.91042 * 25 2 1 43 43 H 1.08999 * 113.86389 * 337.62310 * 25 2 1 44 44 H 1.08996 * 113.85778 * 221.76578 * 27 26 25 45 45 H 1.09002 * 113.97960 * 90.07847 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1278 1.4084 0.0000 4 16 1.3593 2.3914 1.3167 5 8 1.7479 1.9048 2.5939 6 8 -0.0052 2.6490 1.0148 7 7 2.0885 3.8740 1.2046 8 6 1.8914 4.6989 0.0102 9 1 1.6436 4.0588 -0.8366 10 6 3.1765 5.4717 -0.2936 11 6 4.2722 4.5022 -0.6549 12 1 4.0719 3.4410 -0.6671 13 6 5.5301 4.9701 -0.9710 14 7 6.4862 4.1241 -1.2868 15 14 5.8763 6.8057 -0.9507 16 1 6.3380 7.2074 0.4023 17 1 6.9306 7.1216 -1.9476 18 1 4.6354 7.5472 -1.2905 19 6 0.7656 5.6713 0.2512 20 6 -0.1423 5.9410 -0.7557 21 6 -1.1753 6.8325 -0.5344 22 6 -1.3009 7.4536 0.6941 23 6 -0.3939 7.1829 1.7015 24 6 0.6405 6.2930 1.4795 25 6 2.1521 -0.9398 1.0500 26 8 2.1470 -1.9296 -0.0020 27 6 2.1520 -0.9396 -1.0502 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.9411 1.8824 -0.9635 32 1 3.2024 1.3469 0.1725 33 1 2.6462 4.1963 1.9300 34 1 3.0031 6.1515 -1.1280 35 1 3.4728 6.0439 0.5855 36 1 7.3713 4.4532 -1.5088 37 1 -0.0445 5.4551 -1.7153 38 1 -1.8844 7.0436 -1.3211 39 1 -2.1054 8.1535 0.8657 40 1 -0.4917 7.6684 2.6612 41 1 1.3498 6.0823 2.2662 42 1 3.1504 -0.6428 1.3712 43 1 1.4869 -1.1743 1.8810 44 1 1.4868 -1.1741 -1.8812 45 1 3.1494 -0.6414 -1.3733 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579304194.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:42 Heat of formation + Delta-G solvation = -84.890915 kcal Electronic energy + Delta-G solvation = -28564.520081 eV Core-core repulsion = 24674.389269 eV Total energy + Delta-G solvation = -3890.130812 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.72919 -40.32310 -38.16043 -37.26675 -37.02765 -34.65621 -34.49989 -32.03619 -31.56358 -30.85765 -28.93900 -27.65680 -26.81258 -26.49201 -23.55235 -23.20504 -21.63609 -20.63187 -19.92784 -19.06465 -18.71061 -17.96568 -17.58776 -17.23910 -17.00335 -16.81931 -16.34432 -16.27209 -16.05137 -15.92766 -15.20432 -14.75539 -14.70747 -14.46567 -14.26521 -14.19421 -14.07473 -13.68935 -13.59165 -13.20127 -13.14940 -13.09978 -13.06587 -12.93473 -12.78262 -12.50117 -12.33637 -12.31200 -12.08348 -11.76876 -11.74467 -11.69372 -11.28571 -11.26670 -10.74705 -10.71396 -10.31095 -9.70173 -9.49210 -8.22893 -6.24032 -0.70813 0.55440 0.61796 1.37338 1.42225 1.49787 1.77677 2.39397 2.55477 2.69614 2.92891 2.99641 3.14415 3.26012 3.41559 3.63197 3.92329 3.97644 4.01707 4.16904 4.23803 4.26331 4.34047 4.37942 4.45192 4.48681 4.61426 4.62791 4.68242 4.74268 4.78671 4.84810 4.88593 4.97679 5.05218 5.15375 5.16513 5.24497 5.25325 5.44868 5.62476 5.70033 5.70798 5.88695 6.14212 6.23612 6.32498 6.82582 7.39972 8.91610 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008455 B = 0.005527 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3310.998851 B = 5064.929411 C = 7474.653285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.122 4.122 3 C -0.614 4.614 4 S 2.620 3.380 5 O -0.991 6.991 6 O -0.969 6.969 7 N -1.099 6.099 8 C 0.211 3.789 9 H 0.090 0.910 10 C -0.011 4.011 11 C -0.513 4.513 12 H 0.062 0.938 13 C 0.016 3.984 14 N -0.943 5.943 15 Si 0.927 3.073 16 H -0.274 1.274 17 H -0.292 1.292 18 H -0.249 1.249 19 C -0.102 4.102 20 C -0.126 4.126 21 C -0.124 4.124 22 C -0.130 4.130 23 C -0.131 4.131 24 C -0.125 4.125 25 C 0.027 3.973 26 O -0.393 6.393 27 C 0.055 3.945 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.153 0.847 32 H 0.140 0.860 33 H 0.419 0.581 34 H 0.033 0.967 35 H 0.025 0.975 36 H 0.262 0.738 37 H 0.132 0.868 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.139 0.861 41 H 0.119 0.881 42 H 0.091 0.909 43 H 0.108 0.892 44 H 0.119 0.881 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.295 -0.546 1.474 14.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.124 4.124 3 C -0.745 4.745 4 S 2.715 3.285 5 O -0.981 6.981 6 O -0.959 6.959 7 N -0.856 5.856 8 C 0.104 3.896 9 H 0.108 0.892 10 C -0.050 4.050 11 C -0.551 4.551 12 H 0.080 0.920 13 C -0.182 4.182 14 N -0.584 5.584 15 Si 0.753 3.247 16 H -0.200 1.200 17 H -0.219 1.219 18 H -0.173 1.173 19 C -0.104 4.104 20 C -0.145 4.145 21 C -0.142 4.142 22 C -0.148 4.148 23 C -0.149 4.149 24 C -0.144 4.144 25 C -0.050 4.050 26 O -0.312 6.312 27 C -0.022 4.022 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.077 0.923 31 H 0.171 0.829 32 H 0.158 0.842 33 H 0.254 0.746 34 H 0.051 0.949 35 H 0.043 0.957 36 H 0.072 0.928 37 H 0.150 0.850 38 H 0.163 0.837 39 H 0.164 0.836 40 H 0.157 0.843 41 H 0.137 0.863 42 H 0.109 0.891 43 H 0.126 0.874 44 H 0.137 0.863 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.901 -1.127 1.918 15.066 hybrid contribution 1.793 0.973 -0.222 2.052 sum -13.107 -0.154 1.696 13.218 Atomic orbital electron populations 1.22051 0.90273 1.05027 1.04223 1.23535 0.98209 0.91479 0.99205 1.30587 1.13897 1.09018 1.20996 1.04524 0.74657 0.73803 0.75515 1.93531 1.84418 1.80921 1.39240 1.93577 1.32561 1.83723 1.86020 1.55326 1.67739 1.34343 1.28220 1.19549 0.93152 0.91210 0.85708 0.89200 1.19827 0.92000 0.95868 0.97278 1.21353 0.94221 0.94764 1.44798 0.91970 1.25697 0.96423 1.01180 0.94874 1.70011 1.03281 1.36172 1.48950 0.86005 0.78613 0.82113 0.77993 1.20005 1.21875 1.17259 1.20459 0.96658 0.98231 0.95088 1.21266 0.94937 0.99168 0.99119 1.21418 0.98023 0.96586 0.98185 1.21463 0.99688 1.00351 0.93327 1.21421 0.94972 0.98193 1.00339 1.21126 0.99005 0.97310 0.96929 1.24492 1.01817 0.86258 0.92431 1.89680 1.95914 1.28068 1.17516 1.24215 1.01545 0.84466 0.91994 0.89114 0.88788 0.92327 0.82939 0.84198 0.74634 0.94871 0.95657 0.92849 0.85039 0.83663 0.83626 0.84304 0.86326 0.89094 0.87408 0.86322 0.89212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 8.25 71.98 0.59 -2.97 16 2 C -0.12 -3.02 1.06 -51.48 -0.05 -3.08 16 3 C -0.61 -16.82 5.44 71.98 0.39 -16.43 16 4 S 2.62 82.44 4.64 -56.49 -0.26 82.18 16 5 O -0.99 -35.59 18.08 -127.65 -2.31 -37.90 16 6 O -0.97 -32.88 15.63 -127.65 -2.00 -34.88 16 7 N -1.10 -36.07 4.37 -172.53 -0.75 -36.83 16 8 C 0.21 7.18 2.21 44.25 0.10 7.28 16 9 H 0.09 2.86 7.01 -2.39 -0.02 2.84 16 10 C -0.01 -0.44 3.62 29.85 0.11 -0.33 16 11 C -0.51 -24.95 9.39 25.60 0.24 -24.71 16 12 H 0.06 3.12 7.95 -2.91 -0.02 3.09 16 13 C 0.02 0.83 5.47 84.65 0.46 1.29 16 14 N -0.94 -54.01 13.96 21.45 0.30 -53.71 16 15 Si 0.93 41.12 27.47 68.60 1.88 43.00 16 16 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 17 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 18 H -0.25 -10.31 6.54 99.48 0.65 -9.66 16 19 C -0.10 -3.27 4.91 -19.87 -0.10 -3.37 16 20 C -0.13 -3.59 9.67 22.27 0.22 -3.37 16 21 C -0.12 -2.97 10.05 22.27 0.22 -2.75 16 22 C -0.13 -2.98 10.05 22.27 0.22 -2.75 16 23 C -0.13 -3.34 10.05 22.27 0.22 -3.11 16 24 C -0.13 -3.79 9.32 22.27 0.21 -3.58 16 25 C 0.03 0.69 8.37 72.29 0.61 1.29 16 26 O -0.39 -10.63 12.38 -148.98 -1.84 -12.47 16 27 C 0.06 1.27 8.37 72.30 0.60 1.87 16 28 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.09 1.80 8.09 -2.39 -0.02 1.78 16 30 H 0.06 1.46 5.87 -2.39 -0.01 1.44 16 31 H 0.15 3.80 7.44 -2.39 -0.02 3.79 16 32 H 0.14 4.04 7.98 -2.39 -0.02 4.02 16 33 H 0.42 13.34 8.60 -96.73 -0.83 12.51 16 34 H 0.03 1.35 7.20 -2.38 -0.02 1.33 16 35 H 0.03 1.01 7.57 -2.39 -0.02 1.00 16 36 H 0.26 14.38 8.31 -92.70 -0.77 13.61 16 37 H 0.13 3.30 8.04 -2.91 -0.02 3.27 16 38 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 39 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 40 H 0.14 2.78 8.06 -2.91 -0.02 2.75 16 41 H 0.12 3.43 7.56 -2.91 -0.02 3.41 16 42 H 0.09 2.34 7.99 -2.39 -0.02 2.32 16 43 H 0.11 2.51 8.10 -2.39 -0.02 2.49 16 44 H 0.12 2.12 8.10 -2.39 -0.02 2.10 16 45 H 0.09 2.07 8.10 -2.39 -0.02 2.05 16 Total: -1.00 -67.34 379.71 -0.83 -68.17 By element: Atomic # 1 Polarization: 37.06 SS G_CDS: 0.10 Total: 37.16 kcal Atomic # 6 Polarization: -58.78 SS G_CDS: 4.05 Total: -54.73 kcal Atomic # 7 Polarization: -90.08 SS G_CDS: -0.45 Total: -90.54 kcal Atomic # 8 Polarization: -79.09 SS G_CDS: -6.15 Total: -85.24 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 1.88 Total: 43.00 kcal Atomic # 16 Polarization: 82.44 SS G_CDS: -0.26 Total: 82.18 kcal Total: -67.34 -0.83 -68.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579304194.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.721 kcal (2) G-P(sol) polarization free energy of solvation -67.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds