Wall clock time and date at job start Sat Apr 11 2020 05:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35903 * 117.00225 * 2 1 4 4 C 1.38746 * 120.05437 * 0.02562 * 3 2 1 5 5 C 1.38129 * 119.94253 * 180.02562 * 4 3 2 6 6 C 1.38285 * 120.05321 * 359.97142 * 5 4 3 7 7 C 1.50703 * 119.94020 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.46842 * 260.00020 * 7 6 5 9 9 S 1.65606 * 119.99969 * 165.00103 * 8 7 6 10 10 O 1.42095 * 104.27869 * 181.06781 * 9 8 7 11 11 O 1.42097 * 104.27563 * 308.92618 * 9 8 7 12 12 C 1.81404 * 104.44793 * 64.99971 * 9 8 7 13 13 C 1.52999 * 109.47033 * 173.81720 * 12 9 8 14 14 C 1.50701 * 115.55218 * 65.19361 * 13 12 9 15 15 H 1.08006 * 119.99575 * 264.78408 * 14 13 12 16 16 C 1.37869 * 119.99961 * 84.78539 * 14 13 12 17 17 N 1.31519 * 120.00039 * 352.23096 * 16 14 13 18 18 Si 1.86800 * 119.99918 * 172.23464 * 16 14 13 19 19 H 1.48497 * 109.47318 * 90.00025 * 18 16 14 20 20 H 1.48503 * 109.47018 * 210.00057 * 18 16 14 21 21 H 1.48505 * 109.47286 * 329.99663 * 18 16 14 22 22 C 1.53002 * 117.49548 * 279.52264 * 13 12 9 23 23 C 1.53000 * 117.49587 * 210.86531 * 13 12 9 24 24 C 1.38242 * 120.11627 * 0.02562 * 6 5 4 25 25 C 1.50693 * 119.97275 * 180.02562 * 24 6 5 26 26 C 1.38168 * 120.04959 * 359.76887 * 24 6 5 27 27 H 1.08998 * 109.47334 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46558 * 299.99697 * 1 2 3 29 29 H 1.08997 * 109.47432 * 59.99332 * 1 2 3 30 30 H 1.07999 * 120.02980 * 0.02562 * 4 3 2 31 31 H 1.08000 * 119.97151 * 180.02562 * 5 4 3 32 32 H 1.08995 * 109.47512 * 20.00098 * 7 6 5 33 33 H 1.08995 * 109.46900 * 140.00141 * 7 6 5 34 34 H 0.97000 * 120.00534 * 344.99625 * 8 7 6 35 35 H 1.09004 * 109.46945 * 293.81723 * 12 9 8 36 36 H 1.08999 * 109.47327 * 53.81504 * 12 9 8 37 37 H 0.97001 * 119.99550 * 185.02865 * 17 16 14 38 38 H 1.08997 * 117.50243 * 0.02562 * 22 13 12 39 39 H 1.08999 * 117.49925 * 145.01934 * 22 13 12 40 40 H 1.09004 * 117.49542 * 214.97786 * 23 13 12 41 41 H 1.09003 * 117.50200 * 359.97438 * 23 13 12 42 42 H 1.09000 * 109.47154 * 90.00182 * 25 24 6 43 43 H 1.09000 * 109.46994 * 210.00062 * 25 24 6 44 44 H 1.08992 * 109.47414 * 329.99712 * 25 24 6 45 45 H 1.08003 * 120.02214 * 180.25309 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3752 0.0005 5 6 1.9211 3.6047 0.0000 6 6 3.3021 3.6756 -0.0005 7 6 3.9863 5.0184 -0.0005 8 7 4.4212 5.3448 -1.3608 9 16 4.8630 6.8953 -1.7392 10 8 5.1921 6.8387 -3.1204 11 8 3.7807 7.6910 -1.2760 12 6 6.3483 7.1987 -0.7429 13 6 6.9470 8.5552 -1.1200 14 6 6.0935 9.7547 -0.7976 15 1 5.4493 10.1780 -1.5541 16 6 6.1352 10.3116 0.4629 17 7 6.7988 9.7101 1.4260 18 14 5.2491 11.9206 0.8028 19 1 3.8601 11.6369 1.2448 20 1 5.9658 12.6646 1.8696 21 1 5.2171 12.7394 -0.4357 22 6 7.8094 8.6204 -2.3822 23 6 8.4640 8.7152 -1.0017 24 6 4.0561 2.5170 -0.0009 25 6 5.5609 2.5980 -0.0009 26 6 3.4311 1.2847 0.0039 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 0.2129 2.3204 0.0014 31 1 1.3342 4.5114 0.0008 32 1 3.2910 5.7805 0.3514 33 1 4.8529 4.9846 0.6597 34 1 4.4505 4.6528 -2.0399 35 1 6.0826 7.2000 0.3142 36 1 7.0798 6.4132 -0.9327 37 1 6.7682 10.0623 2.3293 38 1 7.9498 7.6971 -2.9441 39 1 7.7597 9.5310 -2.9792 40 1 8.8447 9.6882 -0.6911 41 1 9.0355 7.8542 -0.6549 42 1 5.9237 2.6171 1.0268 43 1 5.9716 1.7291 -0.5151 44 1 5.8759 3.5064 -0.5143 45 1 4.0207 0.3798 0.0076 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000583606078.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:59 Heat of formation + Delta-G solvation = -66.390738 kcal Electronic energy + Delta-G solvation = -27497.923829 eV Core-core repulsion = 23608.595245 eV Total energy + Delta-G solvation = -3889.328584 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.45254 -38.33315 -36.74948 -36.23167 -35.11889 -34.76906 -32.66602 -32.04075 -30.66018 -28.18195 -28.11828 -26.77307 -25.45462 -25.04797 -22.34103 -21.20982 -20.82810 -19.72253 -18.65213 -17.94835 -17.09500 -16.74934 -16.42536 -16.07989 -15.95813 -15.15785 -14.94492 -14.69323 -14.48020 -14.27750 -14.07363 -13.84176 -13.56424 -13.46729 -13.12847 -12.88449 -12.41301 -12.28176 -12.12226 -11.94823 -11.89679 -11.82014 -11.28036 -11.15545 -11.13655 -11.02968 -10.97089 -10.93745 -10.90842 -10.57266 -10.44996 -10.11604 -9.73497 -9.20219 -8.95170 -8.94396 -8.56069 -8.30167 -8.08538 -6.14023 -4.24264 0.97464 1.16915 1.32405 3.00429 3.30881 3.36396 3.38085 3.41658 3.72292 4.37435 4.51833 4.58030 4.62939 4.73854 4.80762 4.83979 4.99987 5.07010 5.13827 5.15158 5.17571 5.21982 5.22306 5.42844 5.54084 5.56356 5.67117 5.73119 5.80980 5.95763 5.97598 6.12334 6.14560 6.24630 6.27921 6.37530 6.52964 6.59562 6.61428 6.72803 6.98769 7.16499 7.22960 7.30600 7.39462 7.80590 8.20767 8.81125 9.46840 10.93581 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017776 B = 0.002934 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.812741 B = 9542.110057 C =10046.792245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.130 3.870 4 C -0.216 4.216 5 C -0.057 4.057 6 C -0.129 4.129 7 C 0.160 3.840 8 N -1.129 6.129 9 S 2.606 3.394 10 O -0.974 6.974 11 O -0.950 6.950 12 C -0.554 4.554 13 C 0.044 3.956 14 C -0.516 4.516 15 H 0.068 0.932 16 C 0.082 3.918 17 N -0.874 5.874 18 Si 0.891 3.109 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.270 1.270 22 C -0.208 4.208 23 C -0.141 4.141 24 C -0.029 4.029 25 C -0.126 4.126 26 C -0.156 4.156 27 H 0.098 0.902 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.410 0.590 35 H 0.134 0.866 36 H 0.099 0.901 37 H 0.263 0.737 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.304 -18.506 0.125 19.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.085 3.915 4 C -0.235 4.235 5 C -0.076 4.076 6 C -0.131 4.131 7 C 0.034 3.966 8 N -0.886 5.886 9 S 2.703 3.297 10 O -0.965 6.965 11 O -0.940 6.940 12 C -0.687 4.687 13 C 0.041 3.959 14 C -0.553 4.553 15 H 0.086 0.914 16 C -0.123 4.123 17 N -0.510 5.510 18 Si 0.718 3.282 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.195 1.195 22 C -0.246 4.246 23 C -0.180 4.180 24 C -0.030 4.030 25 C -0.183 4.183 26 C -0.175 4.175 27 H 0.117 0.883 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.145 0.855 31 H 0.149 0.851 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.242 0.758 35 H 0.152 0.848 36 H 0.118 0.882 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.098 0.902 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.622 -17.937 -0.148 19.490 hybrid contribution -0.309 0.291 0.617 0.749 sum -7.930 -17.646 0.469 19.352 Atomic orbital electron populations 1.23050 0.78408 1.03822 1.01483 1.86055 1.21388 1.27105 1.88755 1.19024 0.92315 0.84061 0.96098 1.21201 1.00005 0.92243 1.10024 1.20965 0.93891 0.97368 0.95339 1.19674 0.93509 0.94371 1.05545 1.20078 0.98944 0.93986 0.83552 1.56078 1.84045 1.30483 1.18001 1.05169 0.77481 0.71894 0.75123 1.93505 1.86177 1.85358 1.31417 1.93529 1.51074 1.66959 1.82453 1.29983 1.17456 1.05964 1.15319 1.18270 0.91360 0.89997 0.96238 1.20524 1.25191 1.11533 0.98051 0.91385 1.24945 0.94126 0.97218 0.95993 1.69978 1.40472 1.39774 1.00760 0.86587 0.79914 0.83485 0.78232 1.20035 1.21095 1.19460 1.23197 1.08585 1.01448 0.91341 1.22552 0.96732 1.01007 0.97743 1.19613 0.96236 0.91460 0.95695 1.20963 0.90463 1.03692 1.03149 1.20242 0.91221 0.98044 1.07982 0.88337 0.92595 0.92595 0.85457 0.85124 0.89404 0.90840 0.75760 0.84822 0.88215 0.92749 0.90670 0.89561 0.89613 0.91528 0.90386 0.91201 0.90222 0.85207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.27 10.50 -19.44 -0.20 -3.47 16 3 C 0.13 1.44 6.69 -39.22 -0.26 1.18 16 4 C -0.22 -2.27 9.04 -39.43 -0.36 -2.63 16 5 C -0.06 -0.66 9.66 -39.60 -0.38 -1.04 16 6 C -0.13 -1.57 5.28 -104.60 -0.55 -2.12 16 7 C 0.16 2.15 5.38 -5.19 -0.03 2.12 16 8 N -1.13 -16.63 5.21 -11.66 -0.06 -16.69 16 9 S 2.61 51.63 5.19 -107.50 -0.56 51.07 16 10 O -0.97 -21.23 18.08 -57.54 -1.04 -22.27 16 11 O -0.95 -22.30 17.17 -57.54 -0.99 -23.29 16 12 C -0.55 -11.27 5.93 37.16 0.22 -11.05 16 13 C 0.04 1.05 1.32 -155.66 -0.21 0.84 16 14 C -0.52 -14.00 8.18 -34.44 -0.28 -14.28 16 15 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 16 C 0.08 2.22 5.38 -17.82 -0.10 2.12 16 17 N -0.87 -23.71 12.98 55.43 0.72 -22.99 16 18 Si 0.89 21.24 29.55 -169.99 -5.02 16.22 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 C -0.21 -4.54 9.96 -26.69 -0.27 -4.81 16 23 C -0.14 -3.18 9.49 -26.69 -0.25 -3.43 16 24 C -0.03 -0.32 5.88 -104.65 -0.62 -0.94 16 25 C -0.13 -1.19 9.26 36.00 0.33 -0.85 16 26 C -0.16 -1.70 9.64 -39.43 -0.38 -2.08 16 27 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 29 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 30 H 0.13 1.06 6.30 -52.49 -0.33 0.72 16 31 H 0.13 1.40 8.03 -52.49 -0.42 0.97 16 32 H 0.09 1.25 7.55 -51.93 -0.39 0.85 16 33 H 0.07 0.88 7.27 -51.93 -0.38 0.50 16 34 H 0.41 5.30 8.60 -34.47 -0.30 5.01 16 35 H 0.13 2.80 8.14 -51.92 -0.42 2.37 16 36 H 0.10 1.69 8.09 -51.92 -0.42 1.27 16 37 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 38 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 40 H 0.09 2.04 8.14 -51.93 -0.42 1.62 16 41 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 44 H 0.08 0.78 6.33 -51.93 -0.33 0.45 16 45 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 387.68 15.07 5.84 5.84 Total: -1.00 -33.42 387.68 -10.16 -43.57 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -6.71 Total: 7.80 kcal Atomic # 6 Polarization: -33.67 SS G_CDS: -2.13 Total: -35.80 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.66 Total: -39.68 kcal Atomic # 8 Polarization: -46.80 SS G_CDS: -2.23 Total: -49.03 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 51.63 SS G_CDS: -0.56 Total: 51.07 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.42 -10.16 -43.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583606078.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.818 kcal (2) G-P(sol) polarization free energy of solvation -33.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds