Wall clock time and date at job start Sat Apr 11 2020 05:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35903 * 117.00225 * 2 1 4 4 C 1.38746 * 120.05437 * 0.02562 * 3 2 1 5 5 C 1.38129 * 119.94253 * 180.02562 * 4 3 2 6 6 C 1.38285 * 120.05321 * 359.97142 * 5 4 3 7 7 C 1.50703 * 119.94020 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.46842 * 260.00020 * 7 6 5 9 9 S 1.65606 * 119.99969 * 165.00103 * 8 7 6 10 10 O 1.42095 * 104.27869 * 181.06781 * 9 8 7 11 11 O 1.42097 * 104.27563 * 308.92618 * 9 8 7 12 12 C 1.81404 * 104.44793 * 64.99971 * 9 8 7 13 13 C 1.52999 * 109.47033 * 173.81720 * 12 9 8 14 14 C 1.50701 * 115.55218 * 65.19361 * 13 12 9 15 15 H 1.08006 * 119.99575 * 264.78408 * 14 13 12 16 16 C 1.37869 * 119.99961 * 84.78539 * 14 13 12 17 17 N 1.31519 * 120.00039 * 352.23096 * 16 14 13 18 18 Si 1.86800 * 119.99918 * 172.23464 * 16 14 13 19 19 H 1.48497 * 109.47318 * 90.00025 * 18 16 14 20 20 H 1.48503 * 109.47018 * 210.00057 * 18 16 14 21 21 H 1.48505 * 109.47286 * 329.99663 * 18 16 14 22 22 C 1.53002 * 117.49548 * 279.52264 * 13 12 9 23 23 C 1.53000 * 117.49587 * 210.86531 * 13 12 9 24 24 C 1.38242 * 120.11627 * 0.02562 * 6 5 4 25 25 C 1.50693 * 119.97275 * 180.02562 * 24 6 5 26 26 C 1.38168 * 120.04959 * 359.76887 * 24 6 5 27 27 H 1.08998 * 109.47334 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46558 * 299.99697 * 1 2 3 29 29 H 1.08997 * 109.47432 * 59.99332 * 1 2 3 30 30 H 1.07999 * 120.02980 * 0.02562 * 4 3 2 31 31 H 1.08000 * 119.97151 * 180.02562 * 5 4 3 32 32 H 1.08995 * 109.47512 * 20.00098 * 7 6 5 33 33 H 1.08995 * 109.46900 * 140.00141 * 7 6 5 34 34 H 0.97000 * 120.00534 * 344.99625 * 8 7 6 35 35 H 1.09004 * 109.46945 * 293.81723 * 12 9 8 36 36 H 1.08999 * 109.47327 * 53.81504 * 12 9 8 37 37 H 0.97001 * 119.99550 * 185.02865 * 17 16 14 38 38 H 1.08997 * 117.50243 * 0.02562 * 22 13 12 39 39 H 1.08999 * 117.49925 * 145.01934 * 22 13 12 40 40 H 1.09004 * 117.49542 * 214.97786 * 23 13 12 41 41 H 1.09003 * 117.50200 * 359.97438 * 23 13 12 42 42 H 1.09000 * 109.47154 * 90.00182 * 25 24 6 43 43 H 1.09000 * 109.46994 * 210.00062 * 25 24 6 44 44 H 1.08992 * 109.47414 * 329.99712 * 25 24 6 45 45 H 1.08003 * 120.02214 * 180.25309 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3752 0.0005 5 6 1.9211 3.6047 0.0000 6 6 3.3021 3.6756 -0.0005 7 6 3.9863 5.0184 -0.0005 8 7 4.4212 5.3448 -1.3608 9 16 4.8630 6.8953 -1.7392 10 8 5.1921 6.8387 -3.1204 11 8 3.7807 7.6910 -1.2760 12 6 6.3483 7.1987 -0.7429 13 6 6.9470 8.5552 -1.1200 14 6 6.0935 9.7547 -0.7976 15 1 5.4493 10.1780 -1.5541 16 6 6.1352 10.3116 0.4629 17 7 6.7988 9.7101 1.4260 18 14 5.2491 11.9206 0.8028 19 1 3.8601 11.6369 1.2448 20 1 5.9658 12.6646 1.8696 21 1 5.2171 12.7394 -0.4357 22 6 7.8094 8.6204 -2.3822 23 6 8.4640 8.7152 -1.0017 24 6 4.0561 2.5170 -0.0009 25 6 5.5609 2.5980 -0.0009 26 6 3.4311 1.2847 0.0039 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 0.2129 2.3204 0.0014 31 1 1.3342 4.5114 0.0008 32 1 3.2910 5.7805 0.3514 33 1 4.8529 4.9846 0.6597 34 1 4.4505 4.6528 -2.0399 35 1 6.0826 7.2000 0.3142 36 1 7.0798 6.4132 -0.9327 37 1 6.7682 10.0623 2.3293 38 1 7.9498 7.6971 -2.9441 39 1 7.7597 9.5310 -2.9792 40 1 8.8447 9.6882 -0.6911 41 1 9.0355 7.8542 -0.6549 42 1 5.9237 2.6171 1.0268 43 1 5.9716 1.7291 -0.5151 44 1 5.8759 3.5064 -0.5143 45 1 4.0207 0.3798 0.0076 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000583606078.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:39:57 Heat of formation + Delta-G solvation = -88.356683 kcal Electronic energy + Delta-G solvation = -27498.876344 eV Core-core repulsion = 23608.595245 eV Total energy + Delta-G solvation = -3890.281099 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.23875 -39.13725 -38.53723 -37.91017 -36.77149 -35.91710 -34.06346 -33.45958 -31.55814 -29.81789 -28.86763 -27.46879 -27.42822 -26.02773 -23.19027 -22.96433 -21.65990 -21.48075 -20.22095 -18.69415 -18.52201 -18.33293 -17.48888 -17.38781 -16.74337 -16.68385 -16.64523 -16.14054 -15.68426 -15.41113 -15.28299 -14.96114 -14.86126 -14.42338 -14.21228 -13.86371 -13.71534 -13.61384 -13.35975 -13.10556 -13.05105 -12.91052 -12.87337 -12.85060 -12.84839 -12.72444 -12.41729 -12.19344 -12.10588 -11.88905 -11.81481 -11.73383 -11.53129 -10.84981 -10.54086 -10.48091 -9.84359 -9.75218 -9.13070 -8.17651 -6.31681 -0.51180 0.33655 0.38664 1.39408 1.42032 1.50229 2.08728 2.35446 2.40987 2.75445 2.97504 3.09806 3.41478 3.48794 3.72725 3.81010 3.93540 4.01230 4.15947 4.31206 4.34367 4.37568 4.39373 4.42485 4.49266 4.55536 4.62661 4.66683 4.74809 4.85095 4.86744 4.87842 4.93761 5.00814 5.05114 5.20800 5.24717 5.35525 5.41836 5.50188 5.61693 5.68101 5.73836 5.79084 6.15714 6.25227 6.42924 6.73980 7.40305 8.89158 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017776 B = 0.002934 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.812741 B = 9542.110057 C =10046.792245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.333 6.333 3 C 0.125 3.875 4 C -0.218 4.218 5 C -0.069 4.069 6 C -0.144 4.144 7 C 0.156 3.844 8 N -1.110 6.110 9 S 2.623 3.377 10 O -0.996 6.996 11 O -0.994 6.994 12 C -0.550 4.550 13 C 0.011 3.989 14 C -0.535 4.535 15 H 0.047 0.953 16 C 0.044 3.956 17 N -0.890 5.890 18 Si 0.933 3.067 19 H -0.276 1.276 20 H -0.274 1.274 21 H -0.271 1.271 22 C -0.198 4.198 23 C -0.137 4.137 24 C -0.029 4.029 25 C -0.129 4.129 26 C -0.166 4.166 27 H 0.120 0.880 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.147 0.853 31 H 0.132 0.868 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.421 0.579 35 H 0.126 0.874 36 H 0.137 0.863 37 H 0.265 0.735 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.231 -20.442 0.309 21.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.247 6.247 3 C 0.080 3.920 4 C -0.237 4.237 5 C -0.088 4.088 6 C -0.146 4.146 7 C 0.031 3.969 8 N -0.871 5.871 9 S 2.721 3.279 10 O -0.987 6.987 11 O -0.984 6.984 12 C -0.683 4.683 13 C 0.009 3.991 14 C -0.573 4.573 15 H 0.065 0.935 16 C -0.159 4.159 17 N -0.526 5.526 18 Si 0.758 3.242 19 H -0.202 1.202 20 H -0.198 1.198 21 H -0.196 1.196 22 C -0.235 4.235 23 C -0.176 4.176 24 C -0.029 4.029 25 C -0.185 4.185 26 C -0.184 4.184 27 H 0.138 0.862 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.165 0.835 31 H 0.150 0.850 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.256 0.744 35 H 0.144 0.856 36 H 0.155 0.845 37 H 0.075 0.925 38 H 0.118 0.882 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.094 0.906 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.548 -19.872 0.023 21.257 hybrid contribution -0.395 0.788 0.551 1.039 sum -7.943 -19.085 0.574 20.680 Atomic orbital electron populations 1.23338 0.76529 1.05569 1.02193 1.86043 1.23393 1.26709 1.88526 1.19222 0.92680 0.84561 0.95575 1.21391 1.01104 0.91673 1.09530 1.21118 0.93986 0.98026 0.95623 1.19599 0.93801 0.93880 1.07277 1.20215 0.99535 0.94552 0.82610 1.55564 1.83470 1.28864 1.19155 1.04372 0.76813 0.72474 0.74284 1.93463 1.86354 1.86102 1.32737 1.93475 1.52787 1.69136 1.82959 1.29858 1.18452 1.05264 1.14742 1.18401 0.91820 0.90634 0.98230 1.20700 1.25588 1.13170 0.97820 0.93495 1.25481 0.94973 0.99412 0.96023 1.70012 1.41095 1.40568 1.00878 0.85934 0.79043 0.80965 0.78211 1.20217 1.19849 1.19592 1.23246 1.06962 1.02366 0.90962 1.22514 0.95993 1.00919 0.98215 1.19774 0.97097 0.91099 0.94978 1.21037 0.89340 1.04222 1.03919 1.20469 0.91559 0.98472 1.07920 0.86209 0.91782 0.91939 0.83514 0.84978 0.90710 0.89269 0.74381 0.85565 0.84457 0.92534 0.88221 0.90161 0.91652 0.89179 0.89480 0.89650 0.90625 0.83938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.33 -6.19 10.50 -92.46 -0.97 -7.16 16 3 C 0.13 2.57 6.69 22.50 0.15 2.72 16 4 C -0.22 -4.29 9.04 22.37 0.20 -4.09 16 5 C -0.07 -1.54 9.66 22.25 0.22 -1.32 16 6 C -0.14 -3.33 5.28 -19.85 -0.10 -3.44 16 7 C 0.16 4.06 5.38 85.63 0.46 4.52 16 8 N -1.11 -31.53 5.21 -190.80 -0.99 -32.52 16 9 S 2.62 102.88 5.19 -56.49 -0.29 102.59 16 10 O -1.00 -42.72 18.08 -127.65 -2.31 -45.02 16 11 O -0.99 -47.49 17.17 -127.65 -2.19 -49.68 16 12 C -0.55 -21.71 5.93 71.98 0.43 -21.29 16 13 C 0.01 0.54 1.32 -52.93 -0.07 0.47 16 14 C -0.54 -29.44 8.18 25.60 0.21 -29.23 16 15 H 0.05 2.70 7.83 -2.91 -0.02 2.67 16 16 C 0.04 2.40 5.38 84.65 0.46 2.86 16 17 N -0.89 -48.16 12.98 21.45 0.28 -47.88 16 18 Si 0.93 43.76 29.55 68.60 2.03 45.79 16 19 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 21 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 22 C -0.20 -8.40 9.96 30.62 0.30 -8.09 16 23 C -0.14 -6.02 9.49 30.62 0.29 -5.73 16 24 C -0.03 -0.59 5.88 -19.88 -0.12 -0.70 16 25 C -0.13 -2.12 9.26 71.23 0.66 -1.46 16 26 C -0.17 -3.32 9.64 22.37 0.22 -3.11 16 27 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.58 7.66 -2.38 -0.02 0.56 16 29 H 0.06 0.59 7.66 -2.39 -0.02 0.57 16 30 H 0.15 2.17 6.30 -2.91 -0.02 2.15 16 31 H 0.13 2.80 8.03 -2.91 -0.02 2.78 16 32 H 0.07 2.14 7.55 -2.39 -0.02 2.12 16 33 H 0.09 2.03 7.27 -2.39 -0.02 2.01 16 34 H 0.42 10.27 8.60 -96.75 -0.83 9.44 16 35 H 0.13 5.19 8.14 -2.39 -0.02 5.18 16 36 H 0.14 4.26 8.09 -2.39 -0.02 4.24 16 37 H 0.27 13.67 8.32 -92.71 -0.77 12.90 16 38 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 39 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 40 H 0.06 3.10 8.14 -2.39 -0.02 3.08 16 41 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 42 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.08 1.13 8.09 -2.39 -0.02 1.11 16 44 H 0.07 1.30 6.33 -2.39 -0.02 1.29 16 45 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -71.29 387.68 0.13 -71.16 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: 0.17 Total: 29.33 kcal Atomic # 6 Polarization: -71.00 SS G_CDS: 4.41 Total: -66.59 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -0.72 Total: -80.41 kcal Atomic # 8 Polarization: -96.40 SS G_CDS: -5.47 Total: -101.87 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: 102.88 SS G_CDS: -0.29 Total: 102.59 kcal Total: -71.29 0.13 -71.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000583606078.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.195 kcal (2) G-P(sol) polarization free energy of solvation -71.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds