Wall clock time and date at job start Sat Apr 11 2020 05:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38238 * 119.99884 * 2 1 4 4 C 1.38227 * 120.00071 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.00064 * 179.97438 * 4 3 2 6 6 C 1.38241 * 120.00077 * 359.95735 * 4 3 2 7 7 S 1.76200 * 119.99957 * 180.02562 * 6 4 3 8 8 O 1.42096 * 106.39871 * 164.14269 * 7 6 4 9 9 O 1.42096 * 106.40334 * 31.22517 * 7 6 4 10 10 N 1.65602 * 107.21712 * 277.68399 * 7 6 4 11 11 C 1.47422 * 125.65092 * 89.97633 * 10 7 6 12 12 C 1.54908 * 104.83150 * 155.90495 * 11 10 7 13 13 C 1.55149 * 101.58307 * 37.00975 * 12 11 10 14 14 O 1.42908 * 110.71917 * 83.03750 * 13 12 11 15 15 C 1.50697 * 110.72224 * 206.12960 * 13 12 11 16 16 H 1.07998 * 119.99424 * 24.87339 * 15 13 12 17 17 C 1.37870 * 120.00183 * 205.14241 * 15 13 12 18 18 N 1.31521 * 120.00290 * 171.06071 * 17 15 13 19 19 Si 1.86806 * 120.00253 * 351.06318 * 17 15 13 20 20 H 1.48502 * 109.46733 * 86.05664 * 19 17 15 21 21 H 1.48493 * 109.47073 * 206.05533 * 19 17 15 22 22 H 1.48500 * 109.46744 * 326.05668 * 19 17 15 23 23 C 1.47018 * 125.64748 * 270.01683 * 10 7 6 24 24 C 1.38235 * 119.99734 * 0.27081 * 6 4 3 25 25 C 1.50703 * 119.99635 * 179.73232 * 24 6 4 26 26 C 1.38234 * 120.00095 * 359.51656 * 24 6 4 27 27 H 1.08997 * 109.47164 * 90.00552 * 1 2 3 28 28 H 1.09008 * 109.46868 * 210.00098 * 1 2 3 29 29 H 1.08994 * 109.47681 * 330.00189 * 1 2 3 30 30 H 1.08004 * 119.99720 * 359.97314 * 3 2 1 31 31 H 1.09002 * 109.47480 * 262.25854 * 5 4 3 32 32 H 1.09002 * 109.46958 * 22.25956 * 5 4 3 33 33 H 1.08999 * 109.47234 * 142.25434 * 5 4 3 34 34 H 1.09003 * 110.36419 * 37.06658 * 11 10 7 35 35 H 1.09001 * 110.36583 * 274.74886 * 11 10 7 36 36 H 1.09001 * 111.00321 * 278.93324 * 12 11 10 37 37 H 1.09005 * 111.03141 * 155.09901 * 12 11 10 38 38 H 0.96697 * 114.00226 * 67.98617 * 14 13 12 39 39 H 0.96993 * 120.00081 * 179.97438 * 18 17 15 40 40 H 1.09005 * 109.88246 * 61.60323 * 23 10 7 41 41 H 1.09006 * 109.88312 * 300.44440 * 23 10 7 42 42 H 1.08997 * 109.47075 * 82.32185 * 25 24 6 43 43 H 1.09000 * 109.46998 * 202.32134 * 25 24 6 44 44 H 1.08994 * 109.47224 * 322.31915 * 25 24 6 45 45 H 1.08004 * 119.99987 * 180.25236 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.3339 2.5024 0.0000 6 6 4.2717 0.0001 0.0020 7 16 6.0337 0.0002 0.0033 8 8 6.4347 -1.3108 0.3771 9 8 6.4344 1.1664 0.7094 10 7 6.5251 0.2105 -1.5641 11 6 6.7794 1.5070 -2.2182 12 6 7.7616 1.1833 -3.3715 13 6 7.2390 -0.1978 -3.8475 14 8 6.1418 -0.0397 -4.7494 15 6 8.3451 -0.9936 -4.4909 16 1 9.3744 -0.7959 -4.2305 17 6 8.0434 -1.9703 -5.4161 18 7 9.0059 -2.5423 -6.1061 19 14 6.2675 -2.4811 -5.6897 20 1 5.6399 -1.5756 -6.6855 21 1 6.2262 -3.8769 -6.1947 22 1 5.5250 -2.3967 -4.4065 23 6 6.7792 -0.8647 -2.5340 24 6 3.5806 -1.1971 -0.0028 25 6 4.3342 -2.5021 -0.0073 26 6 2.1982 -1.1971 0.0011 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3633 -0.8901 0.5139 29 1 -0.3634 0.8899 0.5138 30 1 1.6581 2.1325 -0.0004 31 1 4.6359 2.7472 -1.0184 32 1 3.6917 3.2928 0.3885 33 1 5.2191 2.4112 0.6294 34 1 7.2362 2.2035 -1.5150 35 1 5.8519 1.9203 -2.6144 36 1 8.7849 1.1082 -3.0036 37 1 7.6882 1.9244 -4.1674 38 1 6.3846 0.3529 -5.5991 39 1 8.7937 -3.2296 -6.7567 40 1 5.8645 -1.4320 -2.7066 41 1 7.5619 -1.5245 -2.1595 42 1 4.6343 -2.7519 1.0103 43 1 3.6928 -3.2907 -0.4009 44 1 5.2204 -2.4078 -0.6347 45 1 1.6582 -2.1325 0.0015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592074100.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:27 Heat of formation + Delta-G solvation = -109.569577 kcal Electronic energy + Delta-G solvation = -29300.449609 eV Core-core repulsion = 25409.248649 eV Total energy + Delta-G solvation = -3891.200959 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.74416 -40.06934 -38.72937 -37.09383 -36.45986 -34.71852 -34.48753 -34.43166 -31.25967 -30.13417 -28.97310 -28.13731 -27.71982 -26.66128 -23.48053 -22.37742 -22.00340 -21.60179 -20.19494 -19.35893 -18.98927 -18.31615 -17.53790 -17.18777 -16.57070 -16.29032 -16.08415 -15.80995 -15.49714 -15.20957 -15.06129 -14.70179 -14.47070 -14.45378 -14.27648 -14.07190 -13.87117 -13.82559 -13.67016 -13.52330 -13.35275 -13.23429 -13.15626 -13.09338 -12.88774 -12.53874 -12.42157 -12.17678 -12.13652 -12.05648 -11.99895 -11.77562 -11.35482 -11.26313 -10.66169 -10.31166 -10.10950 -9.90565 -9.64892 -8.35511 -6.47206 -0.74414 -0.22673 0.26413 1.45347 1.51048 1.69912 1.87659 2.38905 2.40522 2.69523 2.94651 3.12979 3.49454 3.61682 3.65920 3.75898 3.81815 4.12200 4.23259 4.24808 4.35268 4.40887 4.46585 4.50794 4.53441 4.55605 4.66868 4.70706 4.78108 4.80414 4.89432 4.91921 4.99167 5.05563 5.10446 5.20857 5.25422 5.29167 5.30177 5.34126 5.41840 5.45007 5.48528 5.55916 5.90449 6.06621 6.61019 6.99599 7.30109 8.77765 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013559 B = 0.004785 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.616054 B = 5850.088316 C = 6504.220964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.023 4.023 3 C -0.162 4.162 4 C 0.022 3.978 5 C -0.191 4.191 6 C -0.708 4.708 7 S 2.708 3.292 8 O -0.979 6.979 9 O -0.967 6.967 10 N -1.009 6.009 11 C 0.117 3.883 12 C -0.136 4.136 13 C 0.219 3.781 14 O -0.563 6.563 15 C -0.550 4.550 16 H 0.049 0.951 17 C 0.029 3.971 18 N -0.931 5.931 19 Si 0.992 3.008 20 H -0.270 1.270 21 H -0.334 1.334 22 H -0.268 1.268 23 C 0.133 3.867 24 C 0.011 3.989 25 C -0.146 4.146 26 C -0.165 4.165 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.158 0.842 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.117 0.883 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.100 0.900 38 H 0.386 0.614 39 H 0.268 0.732 40 H 0.055 0.945 41 H 0.066 0.934 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.788 9.411 11.256 23.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.023 4.023 3 C -0.180 4.180 4 C 0.020 3.980 5 C -0.247 4.247 6 C -0.798 4.798 7 S 2.806 3.194 8 O -0.969 6.969 9 O -0.958 6.958 10 N -0.848 5.848 11 C -0.007 4.007 12 C -0.176 4.176 13 C 0.177 3.823 14 O -0.372 6.372 15 C -0.588 4.588 16 H 0.067 0.933 17 C -0.172 4.172 18 N -0.569 5.569 19 Si 0.825 3.175 20 H -0.197 1.197 21 H -0.267 1.267 22 H -0.193 1.193 23 C 0.007 3.993 24 C 0.009 3.991 25 C -0.203 4.203 26 C -0.184 4.184 27 H 0.106 0.894 28 H 0.102 0.898 29 H 0.106 0.894 30 H 0.175 0.825 31 H 0.108 0.892 32 H 0.120 0.880 33 H 0.134 0.866 34 H 0.112 0.888 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.118 0.882 38 H 0.236 0.764 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.090 0.910 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -17.491 8.944 12.454 23.260 hybrid contribution -0.387 -0.650 -1.156 1.381 sum -17.878 8.295 11.298 22.718 Atomic orbital electron populations 1.21001 0.87901 1.04691 1.03925 1.20658 0.98255 0.92552 0.90824 1.21399 0.92854 0.99361 1.04435 1.19864 0.95142 0.93420 0.89562 1.22061 1.03710 0.93498 1.05433 1.30345 1.25646 0.99751 1.24022 1.01057 0.74395 0.72524 0.71432 1.93555 1.82715 1.39244 1.81434 1.93356 1.82399 1.49230 1.70791 1.58471 1.82202 1.14882 1.29267 1.22269 0.99714 0.83580 0.95096 1.23269 0.98657 0.97652 0.97979 1.19921 0.83456 0.92867 0.86015 1.86084 1.37599 1.83456 1.30089 1.21511 0.93461 1.19918 1.23944 0.93316 1.25832 1.01875 0.95132 0.94359 1.70075 1.35196 1.27058 1.24539 0.85010 0.79590 0.73809 0.79052 1.19668 1.26658 1.19339 1.22097 0.99653 0.89002 0.88542 1.19845 0.95311 0.93423 0.90495 1.21429 1.00282 0.93915 1.04655 1.21334 0.92607 0.99608 1.04820 0.89400 0.89848 0.89395 0.82476 0.89212 0.88032 0.86554 0.88822 0.90009 0.91204 0.88180 0.76432 0.92334 0.92689 0.91572 0.89108 0.89222 0.91034 0.83149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 10.01 71.24 0.71 -0.67 16 2 C -0.02 -0.45 5.88 -19.86 -0.12 -0.57 16 3 C -0.16 -3.40 9.33 22.27 0.21 -3.19 16 4 C 0.02 0.56 5.87 -19.87 -0.12 0.45 16 5 C -0.19 -4.25 9.29 71.24 0.66 -3.59 16 6 C -0.71 -21.67 5.96 22.27 0.13 -21.54 16 7 S 2.71 93.22 5.37 -56.49 -0.30 92.92 16 8 O -0.98 -38.19 13.39 -128.00 -1.71 -39.91 16 9 O -0.97 -33.37 13.61 -128.00 -1.74 -35.11 16 10 N -1.01 -35.74 3.70 -506.43 -1.87 -37.62 16 11 C 0.12 3.53 6.68 86.86 0.58 4.11 16 12 C -0.14 -4.66 6.24 31.98 0.20 -4.46 16 13 C 0.22 9.25 0.69 -10.36 -0.01 9.25 16 14 O -0.56 -22.23 9.00 -148.98 -1.34 -23.58 16 15 C -0.55 -28.92 8.65 25.60 0.22 -28.70 16 16 H 0.05 2.85 7.99 -2.91 -0.02 2.82 16 17 C 0.03 1.57 5.46 84.65 0.46 2.03 16 18 N -0.93 -55.42 13.96 21.45 0.30 -55.12 16 19 Si 0.99 46.56 24.62 68.60 1.69 48.25 16 20 H -0.27 -11.73 7.08 99.48 0.70 -11.02 16 21 H -0.33 -16.30 7.11 99.48 0.71 -15.59 16 22 H -0.27 -12.34 5.52 99.48 0.55 -11.79 16 23 C 0.13 5.56 5.90 86.73 0.51 6.07 16 24 C 0.01 0.32 5.88 -19.87 -0.12 0.20 16 25 C -0.15 -4.33 8.32 71.24 0.59 -3.73 16 26 C -0.17 -3.85 9.33 22.27 0.21 -3.64 16 27 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.08 0.79 8.09 -2.38 -0.02 0.77 16 29 H 0.09 0.75 8.09 -2.39 -0.02 0.73 16 30 H 0.16 2.26 8.05 -2.91 -0.02 2.23 16 31 H 0.09 1.83 6.95 -2.39 -0.02 1.81 16 32 H 0.10 1.64 8.03 -2.39 -0.02 1.62 16 33 H 0.12 3.07 4.53 -17.73 -0.08 2.99 16 34 H 0.09 2.45 7.78 -2.39 -0.02 2.43 16 35 H 0.08 2.13 7.41 -2.39 -0.02 2.11 16 36 H 0.07 2.51 7.99 -2.39 -0.02 2.49 16 37 H 0.10 2.90 8.14 -2.38 -0.02 2.88 16 38 H 0.39 13.31 8.57 -74.06 -0.63 12.68 16 39 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 40 H 0.05 2.35 6.53 -2.38 -0.02 2.34 16 41 H 0.07 3.00 7.81 -2.38 -0.02 2.98 16 42 H 0.09 2.59 7.86 -2.39 -0.02 2.57 16 43 H 0.09 2.15 8.03 -2.39 -0.02 2.13 16 44 H 0.07 2.49 5.80 -2.39 -0.01 2.47 16 45 H 0.15 2.69 8.05 -2.91 -0.02 2.67 16 Total: -1.00 -69.91 359.00 -0.70 -70.61 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: 0.15 Total: 27.53 kcal Atomic # 6 Polarization: -52.11 SS G_CDS: 4.13 Total: -47.98 kcal Atomic # 7 Polarization: -91.16 SS G_CDS: -1.57 Total: -92.73 kcal Atomic # 8 Polarization: -93.80 SS G_CDS: -4.80 Total: -98.59 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.69 Total: 48.25 kcal Atomic # 16 Polarization: 93.22 SS G_CDS: -0.30 Total: 92.92 kcal Total: -69.91 -0.70 -70.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592074100.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.958 kcal (2) G-P(sol) polarization free energy of solvation -69.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds