Wall clock time and date at job start Sat Apr 11 2020 05:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46760 * 2 1 4 4 C 1.50704 * 109.46832 * 180.02562 * 3 2 1 5 5 C 1.38234 * 120.00048 * 90.00332 * 4 3 2 6 6 C 1.38237 * 119.99746 * 179.97438 * 5 4 3 7 7 C 1.38230 * 120.00027 * 359.97438 * 6 5 4 8 8 S 1.76198 * 119.99938 * 180.02562 * 7 6 5 9 9 O 1.42100 * 106.40217 * 336.46242 * 8 7 6 10 10 O 1.42093 * 106.40547 * 203.53915 * 8 7 6 11 11 N 1.65611 * 107.21840 * 90.00109 * 8 7 6 12 12 C 1.47020 * 125.64872 * 269.96136 * 11 8 7 13 13 C 1.54316 * 107.27114 * 181.09041 * 12 11 8 14 14 C 1.55154 * 102.94177 * 22.19612 * 13 12 11 15 15 O 1.42897 * 111.04197 * 82.58299 * 14 13 12 16 16 C 1.50706 * 111.00479 * 206.42410 * 14 13 12 17 17 H 1.07995 * 120.00167 * 111.91520 * 16 14 13 18 18 C 1.37879 * 119.99394 * 292.19219 * 16 14 13 19 19 N 1.31514 * 120.00338 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99424 * 180.02562 * 18 16 14 21 21 H 1.48490 * 109.47405 * 60.00219 * 20 18 16 22 22 H 1.48503 * 109.46845 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47399 * 299.99813 * 20 18 16 24 24 C 1.47426 * 125.64506 * 89.99795 * 11 8 7 25 25 C 1.38240 * 120.00406 * 0.27743 * 7 6 5 26 26 C 1.38236 * 119.99445 * 359.51327 * 25 7 6 27 27 H 1.09001 * 109.47295 * 299.99364 * 1 2 3 28 28 H 1.09002 * 109.47476 * 59.99764 * 1 2 3 29 29 H 1.09007 * 109.47183 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46888 * 240.00985 * 2 1 3 31 31 H 1.08993 * 109.47255 * 120.00229 * 2 1 3 32 32 H 1.09001 * 109.46697 * 60.00270 * 3 2 1 33 33 H 1.09002 * 109.47319 * 300.00332 * 3 2 1 34 34 H 1.07994 * 119.99799 * 359.97438 * 5 4 3 35 35 H 1.07998 * 119.99366 * 180.02562 * 6 5 4 36 36 H 1.09000 * 109.88246 * 300.51442 * 12 11 8 37 37 H 1.09005 * 109.88381 * 61.51771 * 12 11 8 38 38 H 1.08996 * 110.72266 * 263.82567 * 13 12 11 39 39 H 1.09004 * 110.71712 * 140.55438 * 13 12 11 40 40 H 0.96698 * 113.99943 * 64.60268 * 15 14 13 41 41 H 0.96996 * 119.99730 * 179.97438 * 19 18 16 42 42 H 1.08998 * 110.36567 * 37.00477 * 24 11 8 43 43 H 1.08998 * 110.36776 * 274.67626 * 24 11 8 44 44 H 1.07999 * 120.00068 * 179.72892 * 25 7 6 45 45 H 1.08001 * 119.99810 * 180.27405 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.2377 1.4429 -1.1981 6 6 5.6200 1.4434 -1.1986 7 6 6.3116 1.4443 -0.0017 8 16 8.0736 1.4456 -0.0024 9 8 8.4748 0.9013 -1.2522 10 8 8.4758 0.9019 1.2472 11 7 8.5626 3.0279 -0.0029 12 6 8.8159 3.8461 -1.1979 13 6 9.2749 5.2370 -0.7120 14 6 9.7982 4.9495 0.7201 15 8 11.1401 4.4595 0.6872 16 6 9.6953 6.1764 1.5892 17 1 8.9961 6.1983 2.4119 18 6 10.4900 7.2730 1.3304 19 7 11.3374 7.2485 0.3249 20 14 10.3631 8.7935 2.4081 21 1 10.6924 8.4349 3.8109 22 1 11.3157 9.8245 1.9236 23 1 8.9798 9.3302 2.3460 24 6 8.8167 3.8490 1.1948 25 6 5.6210 1.4387 1.1958 26 6 4.2386 1.4426 1.1963 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6765 1.9565 -0.8900 34 1 3.6973 1.4426 -2.1331 35 1 6.1596 1.4440 -2.1341 36 1 9.5987 3.3874 -1.8021 37 1 7.9017 3.9388 -1.7844 38 1 8.4357 5.9319 -0.6838 39 1 10.0747 5.6219 -1.3448 40 1 11.7837 5.0975 0.3500 41 1 11.8961 8.0202 0.1427 42 1 9.2740 3.2452 1.9786 43 1 7.8891 4.2964 1.5519 44 1 6.1614 1.4350 2.1308 45 1 3.6990 1.4427 2.1318 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592074470.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:35 Heat of formation + Delta-G solvation = -110.317037 kcal Electronic energy + Delta-G solvation = -27649.954236 eV Core-core repulsion = 23758.720865 eV Total energy + Delta-G solvation = -3891.233371 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.58190 -38.02414 -36.92727 -35.57880 -35.43876 -34.25360 -32.12182 -31.49686 -31.16285 -29.24689 -28.26848 -26.95861 -24.85115 -22.99023 -22.77911 -21.56024 -21.16978 -19.79837 -18.85591 -17.80461 -17.36223 -16.76162 -16.15995 -15.74963 -15.27689 -14.96458 -14.74834 -14.63544 -14.33423 -14.12214 -13.97537 -13.63124 -13.43343 -13.21962 -12.92042 -12.61674 -12.44629 -12.40824 -11.92911 -11.79487 -11.75990 -11.69286 -11.61511 -11.60874 -11.38868 -11.30890 -11.01517 -10.99381 -10.78900 -10.61291 -10.54781 -10.43758 -10.02107 -9.41370 -9.23535 -9.14044 -8.67881 -8.35725 -8.16969 -6.28279 -4.35884 0.54516 0.84253 1.20347 3.17729 3.21119 3.26636 3.29425 3.54706 4.08317 4.25565 4.36396 4.40115 4.55114 4.69797 4.79501 4.80724 4.98529 5.04645 5.12684 5.19219 5.36082 5.39897 5.44049 5.44497 5.57443 5.70071 5.72907 5.80151 5.84552 5.91048 5.95081 5.99675 6.04713 6.05765 6.24095 6.30920 6.41470 6.61776 6.73323 6.80598 6.93255 7.05394 7.33836 7.36053 7.75061 8.02696 8.65311 9.32885 9.51781 10.79600 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015474 B = 0.003036 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.075816 B = 9219.392133 C =10208.353220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.088 4.088 4 C -0.033 4.033 5 C -0.142 4.142 6 C -0.017 4.017 7 C -0.678 4.678 8 S 2.707 3.293 9 O -0.962 6.962 10 O -0.957 6.957 11 N -1.002 6.002 12 C 0.123 3.877 13 C -0.135 4.135 14 C 0.254 3.746 15 O -0.583 6.583 16 C -0.536 4.536 17 H 0.065 0.935 18 C 0.072 3.928 19 N -0.897 5.897 20 Si 0.904 3.096 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.276 1.276 24 C 0.129 3.871 25 C -0.015 4.015 26 C -0.141 4.141 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.129 0.871 35 H 0.139 0.861 36 H 0.062 0.938 37 H 0.048 0.952 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.385 0.615 41 H 0.270 0.730 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.140 0.860 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.492 -9.425 -2.897 20.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.125 4.125 4 C -0.034 4.034 5 C -0.161 4.161 6 C -0.036 4.036 7 C -0.764 4.764 8 S 2.798 3.202 9 O -0.953 6.953 10 O -0.948 6.948 11 N -0.842 5.842 12 C -0.002 4.002 13 C -0.175 4.175 14 C 0.212 3.788 15 O -0.393 6.393 16 C -0.574 4.574 17 H 0.083 0.917 18 C -0.130 4.130 19 N -0.536 5.536 20 Si 0.731 3.269 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.201 1.201 24 C 0.005 3.995 25 C -0.034 4.034 26 C -0.160 4.160 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.147 0.853 35 H 0.156 0.844 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.237 0.763 41 H 0.080 0.920 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.158 0.842 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -17.154 -10.684 -2.760 20.397 hybrid contribution -0.576 1.753 0.223 1.859 sum -17.731 -8.931 -2.537 20.014 Atomic orbital electron populations 1.21786 0.95432 1.01831 1.01946 1.21512 0.95873 0.95673 1.02669 1.20774 0.90410 0.97841 1.03490 1.20200 0.95891 0.93895 0.93375 1.21131 0.94122 1.02959 0.97848 1.20921 0.94605 0.91372 0.96692 1.31307 1.28315 1.17404 0.99365 1.01413 0.73504 0.71907 0.73376 1.93536 1.81090 1.76490 1.44175 1.93552 1.80945 1.76312 1.43983 1.58379 1.81107 1.29653 1.15053 1.21809 0.98920 0.93567 0.85900 1.23201 1.01208 0.92365 1.00755 1.19542 0.80279 0.88701 0.90242 1.86101 1.18678 1.45802 1.88730 1.21461 1.22628 0.98304 1.15036 0.91717 1.24989 0.94477 0.98714 0.94834 1.69563 1.23959 1.31603 1.28511 0.86468 0.77963 0.81703 0.80744 1.20003 1.21156 1.20145 1.22228 0.98717 0.92735 0.85839 1.20959 0.94629 0.91011 0.96798 1.21151 0.94133 1.02778 0.97888 0.92595 0.92624 0.92564 0.91683 0.91650 0.90482 0.90529 0.85314 0.84357 0.91946 0.93383 0.91483 0.89975 0.76323 0.92039 0.90512 0.91368 0.84174 0.85239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.16 0.37 -0.50 16 2 C -0.12 -0.82 5.92 -26.73 -0.16 -0.98 16 3 C -0.09 -0.66 5.34 -27.88 -0.15 -0.81 16 4 C -0.03 -0.35 5.13 -104.62 -0.54 -0.88 16 5 C -0.14 -1.56 9.70 -39.58 -0.38 -1.95 16 6 C -0.02 -0.22 9.52 -39.58 -0.38 -0.60 16 7 C -0.68 -10.05 5.97 -39.58 -0.24 -10.29 16 8 S 2.71 48.17 5.94 -107.50 -0.64 47.53 16 9 O -0.96 -18.60 16.87 -57.17 -0.96 -19.57 16 10 O -0.96 -19.11 16.60 -57.17 -0.95 -20.06 16 11 N -1.00 -19.13 3.70 -111.42 -0.41 -19.54 16 12 C 0.12 2.30 6.99 -3.07 -0.02 2.28 16 13 C -0.14 -2.90 5.64 -24.90 -0.14 -3.04 16 14 C 0.25 6.06 0.88 -89.62 -0.08 5.98 16 15 O -0.58 -14.98 13.16 -35.23 -0.46 -15.44 16 16 C -0.54 -13.62 8.25 -34.44 -0.28 -13.90 16 17 H 0.06 1.61 7.77 -52.49 -0.41 1.20 16 18 C 0.07 1.83 5.31 -17.82 -0.09 1.74 16 19 N -0.90 -22.93 10.81 55.43 0.60 -22.33 16 20 Si 0.90 19.88 29.54 -169.99 -5.02 14.86 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 24 C 0.13 2.71 6.28 -2.53 -0.02 2.69 16 25 C -0.01 -0.20 9.52 -39.58 -0.38 -0.58 16 26 C -0.14 -1.58 9.70 -39.58 -0.38 -1.97 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.30 8.14 -51.92 -0.42 -0.13 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.53 8.09 -51.93 -0.42 0.11 16 33 H 0.08 0.52 8.09 -51.93 -0.42 0.10 16 34 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.14 1.68 7.62 -52.49 -0.40 1.28 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.41 8.03 -51.93 -0.42 0.99 16 39 H 0.08 1.84 7.85 -51.93 -0.41 1.43 16 40 H 0.38 9.94 7.01 45.56 0.32 10.26 16 41 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 42 H 0.08 1.65 7.78 -51.93 -0.40 1.25 16 43 H 0.07 1.30 8.01 -51.93 -0.42 0.89 16 44 H 0.14 1.79 7.61 -52.49 -0.40 1.39 16 45 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 381.26 15.07 5.75 5.75 Total: -1.00 -30.13 381.26 -11.29 -41.41 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -6.31 Total: 10.20 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: -2.87 Total: -22.80 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.19 Total: -41.87 kcal Atomic # 8 Polarization: -52.69 SS G_CDS: -2.38 Total: -55.07 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Atomic # 16 Polarization: 48.17 SS G_CDS: -0.64 Total: 47.53 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.13 -11.29 -41.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592074470.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.907 kcal (2) G-P(sol) polarization free energy of solvation -30.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds