Wall clock time and date at job start Sat Apr 11 2020 05:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46760 * 2 1 4 4 C 1.50704 * 109.46832 * 180.02562 * 3 2 1 5 5 C 1.38234 * 120.00048 * 90.00332 * 4 3 2 6 6 C 1.38237 * 119.99746 * 179.97438 * 5 4 3 7 7 C 1.38230 * 120.00027 * 359.97438 * 6 5 4 8 8 S 1.76198 * 119.99938 * 180.02562 * 7 6 5 9 9 O 1.42100 * 106.40217 * 336.46242 * 8 7 6 10 10 O 1.42093 * 106.40547 * 203.53915 * 8 7 6 11 11 N 1.65611 * 107.21840 * 90.00109 * 8 7 6 12 12 C 1.47020 * 125.64872 * 269.96136 * 11 8 7 13 13 C 1.54316 * 107.27114 * 181.09041 * 12 11 8 14 14 C 1.55154 * 102.94177 * 22.19612 * 13 12 11 15 15 O 1.42897 * 111.04197 * 82.58299 * 14 13 12 16 16 C 1.50706 * 111.00479 * 206.42410 * 14 13 12 17 17 H 1.07995 * 120.00167 * 111.91520 * 16 14 13 18 18 C 1.37879 * 119.99394 * 292.19219 * 16 14 13 19 19 N 1.31514 * 120.00338 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99424 * 180.02562 * 18 16 14 21 21 H 1.48490 * 109.47405 * 60.00219 * 20 18 16 22 22 H 1.48503 * 109.46845 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47399 * 299.99813 * 20 18 16 24 24 C 1.47426 * 125.64506 * 89.99795 * 11 8 7 25 25 C 1.38240 * 120.00406 * 0.27743 * 7 6 5 26 26 C 1.38236 * 119.99445 * 359.51327 * 25 7 6 27 27 H 1.09001 * 109.47295 * 299.99364 * 1 2 3 28 28 H 1.09002 * 109.47476 * 59.99764 * 1 2 3 29 29 H 1.09007 * 109.47183 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46888 * 240.00985 * 2 1 3 31 31 H 1.08993 * 109.47255 * 120.00229 * 2 1 3 32 32 H 1.09001 * 109.46697 * 60.00270 * 3 2 1 33 33 H 1.09002 * 109.47319 * 300.00332 * 3 2 1 34 34 H 1.07994 * 119.99799 * 359.97438 * 5 4 3 35 35 H 1.07998 * 119.99366 * 180.02562 * 6 5 4 36 36 H 1.09000 * 109.88246 * 300.51442 * 12 11 8 37 37 H 1.09005 * 109.88381 * 61.51771 * 12 11 8 38 38 H 1.08996 * 110.72266 * 263.82567 * 13 12 11 39 39 H 1.09004 * 110.71712 * 140.55438 * 13 12 11 40 40 H 0.96698 * 113.99943 * 64.60268 * 15 14 13 41 41 H 0.96996 * 119.99730 * 179.97438 * 19 18 16 42 42 H 1.08998 * 110.36567 * 37.00477 * 24 11 8 43 43 H 1.08998 * 110.36776 * 274.67626 * 24 11 8 44 44 H 1.07999 * 120.00068 * 179.72892 * 25 7 6 45 45 H 1.08001 * 119.99810 * 180.27405 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.2377 1.4429 -1.1981 6 6 5.6200 1.4434 -1.1986 7 6 6.3116 1.4443 -0.0017 8 16 8.0736 1.4456 -0.0024 9 8 8.4748 0.9013 -1.2522 10 8 8.4758 0.9019 1.2472 11 7 8.5626 3.0279 -0.0029 12 6 8.8159 3.8461 -1.1979 13 6 9.2749 5.2370 -0.7120 14 6 9.7982 4.9495 0.7201 15 8 11.1401 4.4595 0.6872 16 6 9.6953 6.1764 1.5892 17 1 8.9961 6.1983 2.4119 18 6 10.4900 7.2730 1.3304 19 7 11.3374 7.2485 0.3249 20 14 10.3631 8.7935 2.4081 21 1 10.6924 8.4349 3.8109 22 1 11.3157 9.8245 1.9236 23 1 8.9798 9.3302 2.3460 24 6 8.8167 3.8490 1.1948 25 6 5.6210 1.4387 1.1958 26 6 4.2386 1.4426 1.1963 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6765 1.9565 -0.8900 34 1 3.6973 1.4426 -2.1331 35 1 6.1596 1.4440 -2.1341 36 1 9.5987 3.3874 -1.8021 37 1 7.9017 3.9388 -1.7844 38 1 8.4357 5.9319 -0.6838 39 1 10.0747 5.6219 -1.3448 40 1 11.7837 5.0975 0.3500 41 1 11.8961 8.0202 0.1427 42 1 9.2740 3.2452 1.9786 43 1 7.8891 4.2964 1.5519 44 1 6.1614 1.4350 2.1308 45 1 3.6990 1.4427 2.1318 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592074470.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:34 Heat of formation + Delta-G solvation = -130.049798 kcal Electronic energy + Delta-G solvation = -27650.809913 eV Core-core repulsion = 23758.720865 eV Total energy + Delta-G solvation = -3892.089048 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.46888 -39.74206 -38.41379 -37.03026 -36.12881 -36.06087 -34.08944 -32.26466 -32.08281 -30.95497 -29.97936 -27.64718 -26.70380 -23.91191 -23.57952 -23.05899 -21.87998 -21.60836 -20.17698 -19.23562 -19.04639 -18.33655 -17.23330 -16.89616 -16.64752 -16.48696 -16.03940 -15.90115 -15.48655 -15.34882 -15.08306 -14.69103 -14.53027 -14.46444 -14.16460 -14.06695 -13.66022 -13.46501 -13.42985 -13.30873 -13.22559 -13.12766 -12.95709 -12.77325 -12.53935 -12.44573 -12.29797 -12.20498 -12.16878 -12.11303 -11.87230 -11.64864 -11.52243 -11.23343 -10.59388 -10.17037 -10.08521 -10.06671 -9.86915 -8.19904 -6.34128 -0.75508 -0.23504 0.28517 1.46375 1.48408 1.55140 1.90427 2.42079 2.47263 2.74761 3.04347 3.13527 3.67568 3.70640 3.76236 3.91132 4.08496 4.15592 4.19876 4.26701 4.33195 4.39226 4.41879 4.48900 4.65541 4.69780 4.70526 4.71655 4.89467 4.92868 4.97102 4.99769 5.07114 5.12374 5.21476 5.22454 5.23643 5.26753 5.42891 5.45729 5.49917 5.51245 5.57731 5.82797 5.84745 6.12664 6.70108 7.36842 7.50961 8.86553 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015474 B = 0.003036 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.075816 B = 9219.392133 C =10208.353220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.085 4.085 4 C -0.026 4.026 5 C -0.140 4.140 6 C -0.030 4.030 7 C -0.686 4.686 8 S 2.715 3.285 9 O -0.983 6.983 10 O -0.988 6.988 11 N -1.008 6.008 12 C 0.124 3.876 13 C -0.126 4.126 14 C 0.232 3.768 15 O -0.597 6.597 16 C -0.557 4.557 17 H 0.064 0.936 18 C 0.031 3.969 19 N -0.913 5.913 20 Si 0.962 3.038 21 H -0.277 1.277 22 H -0.284 1.284 23 H -0.269 1.269 24 C 0.135 3.865 25 C -0.032 4.032 26 C -0.141 4.141 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.159 0.841 35 H 0.144 0.856 36 H 0.057 0.943 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.379 0.621 41 H 0.270 0.730 42 H 0.062 0.938 43 H 0.086 0.914 44 H 0.139 0.861 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.718 -9.207 -3.146 22.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.122 4.122 4 C -0.026 4.026 5 C -0.159 4.159 6 C -0.049 4.049 7 C -0.776 4.776 8 S 2.812 3.188 9 O -0.974 6.974 10 O -0.978 6.978 11 N -0.846 5.846 12 C 0.000 4.000 13 C -0.166 4.166 14 C 0.191 3.809 15 O -0.407 6.407 16 C -0.595 4.595 17 H 0.082 0.918 18 C -0.169 4.169 19 N -0.553 5.553 20 Si 0.788 3.212 21 H -0.202 1.202 22 H -0.210 1.210 23 H -0.194 1.194 24 C 0.010 3.990 25 C -0.052 4.052 26 C -0.160 4.160 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.176 0.824 35 H 0.162 0.838 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.231 0.769 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.105 0.895 44 H 0.156 0.844 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -20.331 -10.470 -3.015 23.066 hybrid contribution 0.314 1.620 0.298 1.677 sum -20.017 -8.850 -2.717 22.054 Atomic orbital electron populations 1.21771 0.94449 1.02176 1.02430 1.21499 0.96690 0.95090 1.02347 1.20852 0.88076 0.98486 1.04814 1.20620 0.97602 0.91588 0.92786 1.21493 0.93242 1.01638 0.99505 1.21136 0.95848 0.91741 0.96207 1.30640 1.25318 1.20738 1.00921 1.00788 0.74676 0.71049 0.72286 1.93498 1.82470 1.76657 1.44767 1.93505 1.82477 1.76736 1.45125 1.58328 1.82221 1.29717 1.14344 1.21806 1.00455 0.91792 0.85969 1.23001 1.00585 0.93952 0.99063 1.19866 0.79818 0.89461 0.91753 1.86094 1.19757 1.45982 1.88861 1.21740 1.23022 0.99236 1.15499 0.91767 1.25670 0.94240 1.01109 0.95908 1.69650 1.24202 1.32128 1.29334 0.85549 0.78142 0.78628 0.78879 1.20248 1.20960 1.19357 1.22075 0.98683 0.92092 0.86146 1.21119 0.95927 0.91848 0.96290 1.21477 0.93185 1.01740 0.99593 0.92187 0.92079 0.92362 0.91963 0.92127 0.89338 0.89132 0.82360 0.83790 0.92452 0.89865 0.91256 0.91630 0.76948 0.92008 0.91920 0.89547 0.84352 0.82674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 71.98 0.71 -0.53 16 2 C -0.12 -1.25 5.92 30.60 0.18 -1.07 16 3 C -0.09 -0.95 5.34 29.85 0.16 -0.79 16 4 C -0.03 -0.45 5.13 -19.86 -0.10 -0.55 16 5 C -0.14 -2.64 9.70 22.27 0.22 -2.42 16 6 C -0.03 -0.73 9.52 22.27 0.21 -0.52 16 7 C -0.69 -19.72 5.97 22.27 0.13 -19.58 16 8 S 2.72 97.62 5.94 -56.49 -0.34 97.28 16 9 O -0.98 -38.32 16.87 -128.00 -2.16 -40.48 16 10 O -0.99 -40.53 16.60 -128.00 -2.12 -42.66 16 11 N -1.01 -38.63 3.70 -506.43 -1.87 -40.50 16 12 C 0.12 4.62 6.99 86.73 0.61 5.23 16 13 C -0.13 -5.45 5.64 31.78 0.18 -5.27 16 14 C 0.23 11.27 0.88 -10.15 -0.01 11.26 16 15 O -0.60 -31.72 13.16 -148.98 -1.96 -33.68 16 16 C -0.56 -28.54 8.25 25.60 0.21 -28.33 16 17 H 0.06 3.20 7.77 -2.91 -0.02 3.18 16 18 C 0.03 1.59 5.31 84.66 0.45 2.04 16 19 N -0.91 -47.27 10.81 21.45 0.23 -47.04 16 20 Si 0.96 40.64 29.54 68.60 2.03 42.67 16 21 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 22 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 23 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 24 C 0.13 5.74 6.28 86.86 0.55 6.28 16 25 C -0.03 -0.83 9.52 22.27 0.21 -0.62 16 26 C -0.14 -2.80 9.70 22.27 0.22 -2.59 16 27 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.06 0.46 8.14 -2.38 -0.02 0.45 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.09 0.84 8.09 -2.39 -0.02 0.82 16 33 H 0.09 0.81 8.09 -2.39 -0.02 0.79 16 34 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 35 H 0.14 3.26 7.62 -2.91 -0.02 3.24 16 36 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 38 H 0.07 2.90 8.03 -2.39 -0.02 2.88 16 39 H 0.07 3.01 7.85 -2.38 -0.02 2.99 16 40 H 0.38 20.39 7.01 -74.06 -0.52 19.87 16 41 H 0.27 13.40 8.31 -92.71 -0.77 12.63 16 42 H 0.06 2.79 7.78 -2.39 -0.02 2.77 16 43 H 0.09 3.30 8.01 -2.39 -0.02 3.28 16 44 H 0.14 3.51 7.61 -2.91 -0.02 3.49 16 45 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -65.08 381.26 -1.80 -66.88 By element: Atomic # 1 Polarization: 34.54 SS G_CDS: 0.47 Total: 35.00 kcal Atomic # 6 Polarization: -41.39 SS G_CDS: 3.92 Total: -37.47 kcal Atomic # 7 Polarization: -85.91 SS G_CDS: -1.64 Total: -87.55 kcal Atomic # 8 Polarization: -110.58 SS G_CDS: -6.24 Total: -116.82 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Atomic # 16 Polarization: 97.62 SS G_CDS: -0.34 Total: 97.28 kcal Total: -65.08 -1.80 -66.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592074470.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.170 kcal (2) G-P(sol) polarization free energy of solvation -65.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds