Wall clock time and date at job start Sat Apr 11 2020 05:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 113.99954 * 2 1 4 4 C 1.53006 * 109.46839 * 180.02562 * 3 2 1 5 5 S 1.81406 * 115.55073 * 34.32723 * 4 3 2 6 6 O 1.42105 * 110.53992 * 77.20853 * 5 4 3 7 7 O 1.42097 * 110.54195 * 213.95923 * 5 4 3 8 8 N 1.65592 * 104.44995 * 325.58556 * 5 4 3 9 9 C 1.46501 * 120.00554 * 96.98194 * 8 5 4 10 10 C 1.50698 * 109.47221 * 94.99536 * 9 8 5 11 11 H 1.08003 * 119.99918 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99838 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99836 * 180.02562 * 12 10 9 14 14 Si 1.86794 * 120.00237 * 0.02562 * 12 10 9 15 15 H 1.48508 * 109.47187 * 90.00019 * 14 12 10 16 16 H 1.48502 * 109.47501 * 209.99976 * 14 12 10 17 17 H 1.48501 * 109.47494 * 330.00347 * 14 12 10 18 18 C 1.39681 * 119.99941 * 276.98387 * 8 5 4 19 19 C 1.38910 * 120.07222 * 236.78960 * 18 8 5 20 20 C 1.38109 * 119.92566 * 179.76845 * 19 18 8 21 21 C 1.38287 * 120.07067 * 0.50145 * 20 19 18 22 22 C 1.50697 * 119.92347 * 179.76901 * 21 20 19 23 23 C 1.38283 * 120.15223 * 359.74991 * 21 20 19 24 24 C 1.38107 * 120.07209 * 359.97438 * 23 21 20 25 25 C 1.53001 * 117.49726 * 248.61913 * 4 3 2 26 26 C 1.52996 * 117.49701 * 179.97438 * 4 3 2 27 27 H 1.09004 * 109.47387 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46909 * 299.99982 * 1 2 3 29 29 H 1.08998 * 109.47004 * 60.00065 * 1 2 3 30 30 H 1.08997 * 109.47142 * 299.99618 * 3 2 1 31 31 H 1.08990 * 109.47385 * 60.00168 * 3 2 1 32 32 H 1.09004 * 109.47480 * 215.00237 * 9 8 5 33 33 H 1.09003 * 109.47021 * 334.99809 * 9 8 5 34 34 H 0.97001 * 120.00234 * 180.02562 * 13 12 10 35 35 H 1.08008 * 120.03995 * 359.97438 * 19 18 8 36 36 H 1.07992 * 119.96394 * 180.25583 * 20 19 18 37 37 H 1.09002 * 109.47160 * 269.98041 * 22 21 20 38 38 H 1.08997 * 109.47074 * 29.98105 * 22 21 20 39 39 H 1.08999 * 109.47096 * 149.98029 * 22 21 20 40 40 H 1.07994 * 119.96863 * 179.97438 * 23 21 20 41 41 H 1.08001 * 120.03824 * 179.97438 * 24 23 21 42 42 H 1.08997 * 117.49942 * 0.02562 * 25 4 3 43 43 H 1.09004 * 117.49450 * 145.02528 * 25 4 3 44 44 H 1.09007 * 117.50091 * 214.97577 * 26 4 3 45 45 H 1.08999 * 117.50204 * 0.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 16 4.2083 -0.2244 -0.9241 6 8 4.1773 0.0344 -2.3210 7 8 5.3842 -0.7165 -0.2961 8 7 3.0944 -1.4304 -0.7074 9 6 2.0731 -1.6765 -1.7285 10 6 2.5421 -2.7683 -2.6553 11 1 3.5046 -3.2328 -2.4990 12 6 1.7426 -3.1743 -3.7026 13 7 2.1517 -4.1275 -4.5111 14 14 0.0783 -2.3704 -3.9733 15 1 0.2348 -1.1990 -4.8726 16 1 -0.8497 -3.3500 -4.5934 17 1 -0.4733 -1.9229 -2.6692 18 6 3.1284 -2.2130 0.4490 19 6 3.2398 -3.5942 0.3517 20 6 3.2780 -4.3648 1.4972 21 6 3.1951 -3.7636 2.7398 22 6 3.2319 -4.6080 3.9874 23 6 3.0790 -2.3893 2.8402 24 6 3.0459 -1.6124 1.6988 25 6 4.2793 1.6218 1.2629 26 6 4.3469 2.4817 -0.0013 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8463 -0.8900 31 1 1.6887 1.8463 0.8899 32 1 1.1442 -1.9825 -1.2471 33 1 1.9027 -0.7637 -2.2994 34 1 1.5894 -4.4129 -5.2482 35 1 3.2997 -4.0648 -0.6186 36 1 3.3687 -5.4383 1.4224 37 1 2.2169 -4.8962 4.2612 38 1 3.8264 -5.5028 3.8031 39 1 3.6789 -4.0359 4.8004 40 1 3.0140 -1.9230 3.8120 41 1 2.9547 -0.5392 1.7778 42 1 3.6820 1.9951 2.0947 43 1 5.1732 1.0626 1.5395 44 1 5.2853 2.4881 -0.5560 45 1 3.7942 3.4211 -0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603420156.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:05 Heat of formation + Delta-G solvation = -33.250991 kcal Electronic energy + Delta-G solvation = -29950.170407 eV Core-core repulsion = 26062.278870 eV Total energy + Delta-G solvation = -3887.891537 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.14061 -38.46616 -36.95361 -36.35771 -35.59053 -35.25805 -32.55755 -31.06110 -30.39243 -28.48380 -27.71464 -25.51186 -25.40603 -22.95819 -22.39375 -22.01586 -21.72336 -20.74694 -18.38137 -17.46985 -17.16522 -16.73454 -16.04911 -15.82035 -15.63919 -15.35162 -14.76700 -14.63526 -14.50023 -14.05933 -13.97790 -13.44189 -13.21756 -13.01249 -12.83543 -12.72743 -12.41435 -12.15708 -12.11767 -11.93548 -11.72766 -11.61490 -11.47947 -11.45085 -11.23777 -11.13245 -10.97117 -10.87295 -10.70359 -10.64437 -10.39981 -10.26204 -10.04896 -9.54812 -9.32308 -8.58070 -8.52412 -8.36368 -7.40175 -6.03489 -4.01085 0.74930 1.87981 1.98873 2.91270 3.27561 3.31959 3.33588 3.38402 3.73897 4.16642 4.27266 4.41559 4.42344 4.62422 4.71750 5.05816 5.17783 5.24034 5.26713 5.28170 5.30437 5.33339 5.42513 5.44687 5.48822 5.55519 5.56743 5.63059 5.76960 5.78424 5.90847 5.92310 5.99654 6.04529 6.28059 6.51752 6.62182 6.87444 6.90843 7.10842 7.12952 7.15544 7.33400 7.41299 7.66621 7.89724 8.54578 9.01042 9.56143 11.09883 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009070 B = 0.007089 C = 0.005204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3086.432637 B = 3948.666980 C = 5378.808325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.363 6.363 3 C 0.114 3.886 4 C -0.662 4.662 5 S 2.641 3.359 6 O -0.931 6.931 7 O -0.955 6.955 8 N -0.900 5.900 9 C 0.246 3.754 10 C -0.531 4.531 11 H 0.079 0.921 12 C 0.075 3.925 13 N -0.896 5.896 14 Si 0.868 3.132 15 H -0.274 1.274 16 H -0.286 1.286 17 H -0.263 1.263 18 C 0.192 3.808 19 C -0.108 4.108 20 C -0.110 4.110 21 C -0.115 4.115 22 C -0.106 4.106 23 C -0.113 4.113 24 C -0.140 4.140 25 C -0.121 4.121 26 C -0.121 4.121 27 H 0.091 0.909 28 H 0.037 0.963 29 H 0.041 0.959 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.036 0.964 33 H 0.033 0.967 34 H 0.264 0.736 35 H 0.146 0.854 36 H 0.118 0.882 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.113 0.887 41 H 0.120 0.880 42 H 0.110 0.890 43 H 0.118 0.882 44 H 0.107 0.893 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.584 10.432 16.093 19.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.037 3.963 4 C -0.747 4.747 5 S 2.730 3.270 6 O -0.921 6.921 7 O -0.946 6.946 8 N -0.728 5.728 9 C 0.124 3.876 10 C -0.571 4.571 11 H 0.097 0.903 12 C -0.128 4.128 13 N -0.534 5.534 14 Si 0.695 3.305 15 H -0.200 1.200 16 H -0.212 1.212 17 H -0.188 1.188 18 C 0.096 3.904 19 C -0.130 4.130 20 C -0.128 4.128 21 C -0.115 4.115 22 C -0.163 4.163 23 C -0.131 4.131 24 C -0.161 4.161 25 C -0.159 4.159 26 C -0.160 4.160 27 H 0.110 0.890 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.164 0.836 36 H 0.136 0.864 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.131 0.869 41 H 0.138 0.862 42 H 0.128 0.872 43 H 0.136 0.864 44 H 0.125 0.875 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.776 10.185 15.363 18.449 hybrid contribution -1.818 0.967 -0.051 2.060 sum -2.594 11.152 15.312 19.119 Atomic orbital electron populations 1.22756 0.80944 1.03420 0.99371 1.88365 1.19808 1.24768 1.95181 1.21489 0.86946 0.86768 1.01134 1.32539 1.04323 1.19794 1.18074 1.04242 0.73818 0.74457 0.74438 1.93625 1.86206 1.84969 1.27290 1.93561 1.44975 1.76978 1.79056 1.54767 1.48228 1.43966 1.25884 1.19405 0.86613 0.96768 0.84780 1.21529 1.05850 1.18681 1.11005 0.90258 1.24811 0.97841 0.94738 0.95368 1.69894 1.37630 1.29040 1.16876 0.86977 0.84684 0.79773 0.79041 1.19976 1.21159 1.18808 1.17229 0.97383 0.90721 0.85025 1.21691 0.98042 0.93201 1.00021 1.20903 1.00959 0.99391 0.91596 1.19762 1.02913 0.94007 0.94865 1.20686 1.01570 0.98980 0.95031 1.20622 1.02147 0.93043 0.97335 1.21201 1.03134 0.99958 0.91788 1.23018 1.01450 1.01210 0.90230 1.22824 0.99799 0.92434 1.00925 0.89026 0.94420 0.94037 0.92019 0.92441 0.94560 0.94954 0.92637 0.83593 0.86405 0.91928 0.92006 0.92249 0.86860 0.86180 0.87155 0.86416 0.87457 0.86915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.26 101.05 1.04 1.45 16 2 O -0.36 -5.57 3.43 -35.23 -0.12 -5.69 16 3 C 0.11 1.47 5.84 37.16 0.22 1.68 16 4 C -0.66 -9.25 1.68 -90.62 -0.15 -9.40 16 5 S 2.64 53.43 5.23 -107.50 -0.56 52.86 16 6 O -0.93 -22.33 16.74 -57.54 -0.96 -23.29 16 7 O -0.96 -20.74 16.66 -57.54 -0.96 -21.70 16 8 N -0.90 -19.18 1.30 -59.80 -0.08 -19.26 16 9 C 0.25 5.84 1.88 -5.19 -0.01 5.83 16 10 C -0.53 -15.04 8.67 -34.44 -0.30 -15.34 16 11 H 0.08 2.46 7.28 -52.48 -0.38 2.08 16 12 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 13 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 14 Si 0.87 21.00 27.47 -169.99 -4.67 16.33 16 15 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.26 -5.79 6.54 56.52 0.37 -5.42 16 18 C 0.19 3.80 4.54 -83.79 -0.38 3.42 16 19 C -0.11 -2.19 9.50 -39.38 -0.37 -2.57 16 20 C -0.11 -1.85 9.69 -39.61 -0.38 -2.23 16 21 C -0.11 -1.70 5.88 -104.59 -0.62 -2.32 16 22 C -0.11 -1.18 10.01 36.00 0.36 -0.82 16 23 C -0.11 -1.66 9.69 -39.61 -0.38 -2.04 16 24 C -0.14 -2.31 8.60 -39.38 -0.34 -2.65 16 25 C -0.12 -1.30 8.82 -26.71 -0.24 -1.54 16 26 C -0.12 -1.28 10.02 -26.71 -0.27 -1.55 16 27 H 0.09 1.27 7.63 -51.93 -0.40 0.87 16 28 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.57 7.90 -51.93 -0.41 0.16 16 32 H 0.04 0.83 5.65 -51.93 -0.29 0.54 16 33 H 0.03 0.78 6.68 -51.93 -0.35 0.43 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.15 3.32 6.14 -52.48 -0.32 3.00 16 36 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 39 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 40 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 41 H 0.12 1.76 4.75 -52.49 -0.25 1.51 16 42 H 0.11 0.90 8.05 -51.93 -0.42 0.49 16 43 H 0.12 1.33 7.66 -51.93 -0.40 0.93 16 44 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 367.29 15.07 5.53 5.53 Total: -1.00 -34.85 367.29 -9.57 -44.42 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -6.60 Total: 3.46 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: -1.92 Total: -26.01 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: 0.70 Total: -45.91 kcal Atomic # 8 Polarization: -48.64 SS G_CDS: -2.04 Total: -50.68 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Atomic # 16 Polarization: 53.43 SS G_CDS: -0.56 Total: 52.86 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.85 -9.57 -44.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603420156.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.166 kcal (2) G-P(sol) polarization free energy of solvation -34.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds