Wall clock time and date at job start Sat Apr 11 2020 05:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 113.99954 * 2 1 4 4 C 1.53006 * 109.46839 * 180.02562 * 3 2 1 5 5 S 1.81406 * 115.55073 * 34.32723 * 4 3 2 6 6 O 1.42105 * 110.53992 * 77.20853 * 5 4 3 7 7 O 1.42097 * 110.54195 * 213.95923 * 5 4 3 8 8 N 1.65592 * 104.44995 * 325.58556 * 5 4 3 9 9 C 1.46501 * 120.00554 * 96.98194 * 8 5 4 10 10 C 1.50698 * 109.47221 * 94.99536 * 9 8 5 11 11 H 1.08003 * 119.99918 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99838 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99836 * 180.02562 * 12 10 9 14 14 Si 1.86794 * 120.00237 * 0.02562 * 12 10 9 15 15 H 1.48508 * 109.47187 * 90.00019 * 14 12 10 16 16 H 1.48502 * 109.47501 * 209.99976 * 14 12 10 17 17 H 1.48501 * 109.47494 * 330.00347 * 14 12 10 18 18 C 1.39681 * 119.99941 * 276.98387 * 8 5 4 19 19 C 1.38910 * 120.07222 * 236.78960 * 18 8 5 20 20 C 1.38109 * 119.92566 * 179.76845 * 19 18 8 21 21 C 1.38287 * 120.07067 * 0.50145 * 20 19 18 22 22 C 1.50697 * 119.92347 * 179.76901 * 21 20 19 23 23 C 1.38283 * 120.15223 * 359.74991 * 21 20 19 24 24 C 1.38107 * 120.07209 * 359.97438 * 23 21 20 25 25 C 1.53001 * 117.49726 * 248.61913 * 4 3 2 26 26 C 1.52996 * 117.49701 * 179.97438 * 4 3 2 27 27 H 1.09004 * 109.47387 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46909 * 299.99982 * 1 2 3 29 29 H 1.08998 * 109.47004 * 60.00065 * 1 2 3 30 30 H 1.08997 * 109.47142 * 299.99618 * 3 2 1 31 31 H 1.08990 * 109.47385 * 60.00168 * 3 2 1 32 32 H 1.09004 * 109.47480 * 215.00237 * 9 8 5 33 33 H 1.09003 * 109.47021 * 334.99809 * 9 8 5 34 34 H 0.97001 * 120.00234 * 180.02562 * 13 12 10 35 35 H 1.08008 * 120.03995 * 359.97438 * 19 18 8 36 36 H 1.07992 * 119.96394 * 180.25583 * 20 19 18 37 37 H 1.09002 * 109.47160 * 269.98041 * 22 21 20 38 38 H 1.08997 * 109.47074 * 29.98105 * 22 21 20 39 39 H 1.08999 * 109.47096 * 149.98029 * 22 21 20 40 40 H 1.07994 * 119.96863 * 179.97438 * 23 21 20 41 41 H 1.08001 * 120.03824 * 179.97438 * 24 23 21 42 42 H 1.08997 * 117.49942 * 0.02562 * 25 4 3 43 43 H 1.09004 * 117.49450 * 145.02528 * 25 4 3 44 44 H 1.09007 * 117.50091 * 214.97577 * 26 4 3 45 45 H 1.08999 * 117.50204 * 0.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 16 4.2083 -0.2244 -0.9241 6 8 4.1773 0.0344 -2.3210 7 8 5.3842 -0.7165 -0.2961 8 7 3.0944 -1.4304 -0.7074 9 6 2.0731 -1.6765 -1.7285 10 6 2.5421 -2.7683 -2.6553 11 1 3.5046 -3.2328 -2.4990 12 6 1.7426 -3.1743 -3.7026 13 7 2.1517 -4.1275 -4.5111 14 14 0.0783 -2.3704 -3.9733 15 1 0.2348 -1.1990 -4.8726 16 1 -0.8497 -3.3500 -4.5934 17 1 -0.4733 -1.9229 -2.6692 18 6 3.1284 -2.2130 0.4490 19 6 3.2398 -3.5942 0.3517 20 6 3.2780 -4.3648 1.4972 21 6 3.1951 -3.7636 2.7398 22 6 3.2319 -4.6080 3.9874 23 6 3.0790 -2.3893 2.8402 24 6 3.0459 -1.6124 1.6988 25 6 4.2793 1.6218 1.2629 26 6 4.3469 2.4817 -0.0013 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8463 -0.8900 31 1 1.6887 1.8463 0.8899 32 1 1.1442 -1.9825 -1.2471 33 1 1.9027 -0.7637 -2.2994 34 1 1.5894 -4.4129 -5.2482 35 1 3.2997 -4.0648 -0.6186 36 1 3.3687 -5.4383 1.4224 37 1 2.2169 -4.8962 4.2612 38 1 3.8264 -5.5028 3.8031 39 1 3.6789 -4.0359 4.8004 40 1 3.0140 -1.9230 3.8120 41 1 2.9547 -0.5392 1.7778 42 1 3.6820 1.9951 2.0947 43 1 5.1732 1.0626 1.5395 44 1 5.2853 2.4881 -0.5560 45 1 3.7942 3.4211 -0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603420156.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:04 Heat of formation + Delta-G solvation = -57.761454 kcal Electronic energy + Delta-G solvation = -29951.233260 eV Core-core repulsion = 26062.278870 eV Total energy + Delta-G solvation = -3888.954390 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.44816 -39.47943 -38.37391 -37.63891 -37.15099 -36.80359 -34.64047 -32.45837 -31.72610 -29.82100 -29.11746 -26.74473 -26.44339 -24.17546 -23.72140 -23.47216 -22.98351 -22.08349 -19.85321 -19.15901 -18.74007 -18.19058 -17.59183 -16.96292 -16.78855 -16.43587 -16.32163 -16.02261 -15.89590 -15.63014 -15.02766 -14.78171 -14.49443 -14.44773 -14.14421 -14.04692 -13.84092 -13.61430 -13.45484 -13.31378 -13.24149 -13.05163 -12.94218 -12.55893 -12.52366 -12.42767 -12.31746 -12.23934 -12.07200 -12.03698 -11.81836 -11.63287 -11.45316 -11.37210 -10.76691 -10.43129 -10.13639 -9.69606 -8.82622 -8.28121 -6.31645 -0.72776 0.56772 0.64908 1.30541 1.36203 1.44622 1.64434 2.17263 2.34394 2.78986 2.89282 2.97121 3.05656 3.25276 3.49950 3.70665 3.88348 4.09428 4.18485 4.24026 4.36139 4.36685 4.49129 4.51561 4.57980 4.59733 4.65025 4.67076 4.70163 4.82495 4.87520 4.92825 4.98721 5.00610 5.02152 5.08692 5.24227 5.29717 5.36666 5.54133 5.56462 5.83774 5.89228 5.99279 6.25400 6.30771 6.47060 6.69442 7.29497 8.89610 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009070 B = 0.007089 C = 0.005204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3086.432637 B = 3948.666980 C = 5378.808325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.394 6.394 3 C 0.111 3.889 4 C -0.657 4.657 5 S 2.621 3.379 6 O -0.992 6.992 7 O -0.991 6.991 8 N -0.910 5.910 9 C 0.269 3.731 10 C -0.539 4.539 11 H 0.023 0.977 12 C 0.006 3.994 13 N -0.950 5.950 14 Si 0.939 3.061 15 H -0.270 1.270 16 H -0.279 1.279 17 H -0.225 1.225 18 C 0.164 3.836 19 C -0.150 4.150 20 C -0.119 4.119 21 C -0.108 4.108 22 C -0.103 4.103 23 C -0.104 4.104 24 C -0.133 4.133 25 C -0.103 4.103 26 C -0.108 4.108 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.048 0.952 33 H 0.031 0.969 34 H 0.266 0.734 35 H 0.096 0.904 36 H 0.127 0.873 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.160 0.840 41 H 0.145 0.855 42 H 0.155 0.845 43 H 0.108 0.892 44 H 0.103 0.897 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.964 14.242 20.958 25.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.313 6.313 3 C 0.033 3.967 4 C -0.751 4.751 5 S 2.720 3.280 6 O -0.983 6.983 7 O -0.982 6.982 8 N -0.737 5.737 9 C 0.145 3.855 10 C -0.578 4.578 11 H 0.042 0.958 12 C -0.191 4.191 13 N -0.591 5.591 14 Si 0.761 3.239 15 H -0.195 1.195 16 H -0.205 1.205 17 H -0.147 1.147 18 C 0.069 3.931 19 C -0.171 4.171 20 C -0.138 4.138 21 C -0.108 4.108 22 C -0.160 4.160 23 C -0.123 4.123 24 C -0.154 4.154 25 C -0.140 4.140 26 C -0.147 4.147 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.123 0.877 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.114 0.886 36 H 0.145 0.855 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.102 0.898 40 H 0.177 0.823 41 H 0.163 0.837 42 H 0.173 0.827 43 H 0.127 0.873 44 H 0.122 0.878 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -3.112 13.916 20.216 24.739 hybrid contribution -0.903 -0.211 -1.430 1.704 sum -4.016 13.705 18.786 23.598 Atomic orbital electron populations 1.22844 0.79992 1.02922 1.01192 1.88332 1.21036 1.26493 1.95484 1.21757 0.85194 0.86232 1.03498 1.31868 1.05729 1.17460 1.20046 1.04276 0.73562 0.76086 0.74039 1.93541 1.86940 1.86138 1.31690 1.93499 1.46973 1.78721 1.78978 1.54502 1.47243 1.45852 1.26060 1.18943 0.87516 0.94423 0.84586 1.21873 1.03824 1.19783 1.12365 0.95827 1.25896 1.02971 0.95372 0.94852 1.70086 1.39813 1.31267 1.17955 0.85855 0.78707 0.78649 0.80734 1.19487 1.20481 1.14746 1.17493 0.99360 0.90242 0.85970 1.21534 1.01799 0.94617 0.99175 1.21067 1.01115 0.99803 0.91783 1.20230 1.00474 0.94987 0.95152 1.20760 1.02935 0.98815 0.93473 1.21171 0.99720 0.92804 0.98560 1.21447 1.01983 1.01363 0.90615 1.23370 1.00679 0.99491 0.90502 1.23247 0.99156 0.92247 1.00044 0.90755 0.90974 0.93812 0.91772 0.87745 0.93406 0.95138 0.92530 0.88622 0.85541 0.90306 0.91589 0.89796 0.82265 0.83735 0.82709 0.87320 0.87818 0.82794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.26 113.37 1.16 1.76 16 2 O -0.39 -11.04 3.43 -148.98 -0.51 -11.55 16 3 C 0.11 2.34 5.84 71.98 0.42 2.76 16 4 C -0.66 -16.37 1.68 -10.79 -0.02 -16.39 16 5 S 2.62 110.27 5.23 -56.49 -0.30 109.98 16 6 O -0.99 -51.07 16.74 -127.65 -2.14 -53.21 16 7 O -0.99 -45.54 16.66 -127.65 -2.13 -47.66 16 8 N -0.91 -40.70 1.30 -343.12 -0.44 -41.14 16 9 C 0.27 13.38 1.88 85.63 0.16 13.54 16 10 C -0.54 -33.34 8.67 25.60 0.22 -33.12 16 11 H 0.02 1.66 7.28 -2.91 -0.02 1.64 16 12 C 0.01 0.37 5.47 84.65 0.46 0.84 16 13 N -0.95 -62.69 13.96 21.45 0.30 -62.39 16 14 Si 0.94 44.65 27.47 68.60 1.88 46.54 16 15 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 16 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 17 H -0.22 -9.20 6.54 99.48 0.65 -8.55 16 18 C 0.16 6.74 4.54 38.21 0.17 6.92 16 19 C -0.15 -6.62 9.50 22.40 0.21 -6.41 16 20 C -0.12 -4.16 9.69 22.25 0.22 -3.94 16 21 C -0.11 -2.95 5.88 -19.84 -0.12 -3.07 16 22 C -0.10 -1.89 10.01 71.24 0.71 -1.18 16 23 C -0.10 -2.67 9.69 22.25 0.22 -2.45 16 24 C -0.13 -4.14 8.60 22.40 0.19 -3.95 16 25 C -0.10 -1.67 8.82 30.61 0.27 -1.40 16 26 C -0.11 -1.80 10.02 30.61 0.31 -1.50 16 27 H 0.07 1.90 7.63 -2.39 -0.02 1.89 16 28 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.10 1.30 7.90 -2.39 -0.02 1.28 16 32 H 0.05 2.24 5.65 -2.38 -0.01 2.23 16 33 H 0.03 1.52 6.68 -2.39 -0.02 1.51 16 34 H 0.27 16.26 8.31 -92.71 -0.77 15.49 16 35 H 0.10 5.08 6.14 -2.91 -0.02 5.06 16 36 H 0.13 3.98 8.06 -2.91 -0.02 3.95 16 37 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.07 1.18 8.08 -2.39 -0.02 1.16 16 39 H 0.08 1.18 8.08 -2.39 -0.02 1.16 16 40 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 41 H 0.15 3.65 4.75 -2.91 -0.01 3.64 16 42 H 0.16 1.26 8.05 -2.39 -0.02 1.24 16 43 H 0.11 2.06 7.66 -2.38 -0.02 2.04 16 44 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 45 H 0.15 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -89.18 367.29 2.20 -86.98 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.94 Total: 20.04 kcal Atomic # 6 Polarization: -52.18 SS G_CDS: 4.59 Total: -47.58 kcal Atomic # 7 Polarization: -103.38 SS G_CDS: -0.15 Total: -103.53 kcal Atomic # 8 Polarization: -107.65 SS G_CDS: -4.77 Total: -112.42 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.54 kcal Atomic # 16 Polarization: 110.27 SS G_CDS: -0.30 Total: 109.98 kcal Total: -89.18 2.20 -86.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603420156.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.221 kcal (2) G-P(sol) polarization free energy of solvation -89.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds