Wall clock time and date at job start Sat Apr 11 2020 05:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37983 * 120.07079 * 2 1 4 4 C 1.38343 * 120.14393 * 179.97438 * 3 2 1 5 5 C 1.38381 * 120.29083 * 0.02562 * 4 3 2 6 6 S 1.76200 * 119.92511 * 180.02562 * 5 4 3 7 7 C 1.81398 * 104.44717 * 90.00408 * 6 5 4 8 8 O 1.42106 * 104.27762 * 206.07216 * 6 5 4 9 9 O 1.42099 * 104.27858 * 333.93400 * 6 5 4 10 10 C 1.37932 * 120.14499 * 359.74613 * 5 4 3 11 11 C 1.39552 * 120.07690 * 179.97438 * 2 1 3 12 12 C 1.47846 * 120.14378 * 359.97438 * 11 2 1 13 13 O 1.21556 * 119.99938 * 303.49913 * 12 11 2 14 14 N 1.34773 * 120.00322 * 123.49822 * 12 11 2 15 15 C 1.46498 * 119.99649 * 354.35466 * 14 12 11 16 16 C 1.50694 * 109.47333 * 90.00196 * 15 14 12 17 17 H 1.08002 * 120.00249 * 359.97438 * 16 15 14 18 18 C 1.37884 * 120.00304 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99752 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99982 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47451 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46942 * 120.00016 * 20 18 16 23 23 H 1.48493 * 109.47439 * 239.99722 * 20 18 16 24 24 C 1.46494 * 120.00073 * 174.35653 * 14 12 11 25 25 C 1.52998 * 109.47327 * 304.59361 * 24 14 12 26 26 C 1.53004 * 109.47505 * 64.59451 * 24 14 12 27 27 H 1.09003 * 109.47558 * 264.89678 * 1 2 3 28 28 H 1.09005 * 109.47629 * 24.89455 * 1 2 3 29 29 H 1.09001 * 109.47363 * 144.89655 * 1 2 3 30 30 H 1.07999 * 119.92767 * 359.97438 * 3 2 1 31 31 H 1.07995 * 119.85046 * 180.02562 * 4 3 2 32 32 H 1.08999 * 109.47420 * 59.99877 * 7 6 5 33 33 H 1.09003 * 109.47510 * 179.97438 * 7 6 5 34 34 H 1.09002 * 109.47635 * 299.99997 * 7 6 5 35 35 H 1.08000 * 120.07649 * 180.27324 * 10 5 4 36 36 H 1.09010 * 109.47203 * 209.99895 * 15 14 12 37 37 H 1.09005 * 109.47264 * 329.99846 * 15 14 12 38 38 H 0.96997 * 119.99726 * 179.97438 * 19 18 16 39 39 H 1.09003 * 109.47368 * 184.59678 * 24 14 12 40 40 H 1.09000 * 109.47530 * 65.33595 * 25 24 14 41 41 H 1.09002 * 109.47713 * 185.34156 * 25 24 14 42 42 H 1.09003 * 109.47035 * 305.34180 * 25 24 14 43 43 H 1.09003 * 109.46751 * 64.86905 * 26 24 14 44 44 H 1.08999 * 109.47066 * 184.86927 * 26 24 14 45 45 H 1.08998 * 109.46689 * 304.87455 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1941 0.0000 4 6 3.5818 1.1959 0.0005 5 6 4.2813 0.0019 0.0005 6 16 6.0432 0.0154 0.0019 7 6 6.4944 0.0179 1.7589 8 8 6.4036 -1.2187 -0.6036 9 8 6.3847 1.2553 -0.6024 10 6 3.6023 -1.1987 0.0053 11 6 2.2063 -1.2076 0.0005 12 6 1.4720 -2.4908 0.0017 13 8 0.6662 -2.7292 0.8800 14 7 1.6960 -3.3963 -0.9711 15 6 2.5727 -3.0612 -2.0959 16 6 3.9905 -3.4455 -1.7597 17 1 4.2162 -3.8941 -0.8036 18 6 4.9998 -3.2244 -2.6728 19 7 4.7250 -2.6785 -3.8373 20 14 6.7573 -3.7001 -2.2557 21 1 6.8002 -4.2919 -0.8944 22 1 7.2484 -4.6948 -3.2430 23 1 7.6205 -2.4926 -2.2985 24 6 1.0629 -4.7157 -0.9036 25 6 1.4146 -5.3827 0.4276 26 6 -0.4554 -4.5589 -1.0100 27 1 -0.3634 -0.0914 1.0236 28 1 -0.3634 0.9322 -0.4326 29 1 -0.3634 -0.8407 -0.5910 30 1 1.6583 2.1294 -0.0004 31 1 4.1181 2.1332 0.0010 32 1 6.0939 -0.8754 2.2382 33 1 7.5801 0.0257 1.8553 34 1 6.0803 0.9045 2.2392 35 1 4.1493 -2.1299 0.0097 36 1 2.2494 -3.6056 -2.9833 37 1 2.5227 -1.9895 -2.2888 38 1 5.4350 -2.5227 -4.4795 39 1 1.4228 -5.3340 -1.7260 40 1 0.9733 -4.8146 1.2466 41 1 1.0234 -6.4000 0.4389 42 1 2.4979 -5.4087 0.5460 43 1 -0.7118 -4.1637 -1.9930 44 1 -0.9314 -5.5299 -0.8733 45 1 -0.8044 -3.8713 -0.2396 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608814347.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:07 Heat of formation + Delta-G solvation = -72.636648 kcal Electronic energy + Delta-G solvation = -29516.116700 eV Core-core repulsion = 25626.517273 eV Total energy + Delta-G solvation = -3889.599427 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.05081 -38.18880 -36.70352 -35.53546 -35.40899 -33.23686 -32.68495 -31.77588 -30.20505 -29.41844 -27.24099 -26.85498 -26.66180 -23.72483 -22.79762 -21.85375 -21.21013 -19.26443 -18.11433 -17.04468 -16.62803 -15.97291 -15.91507 -15.70418 -15.37479 -15.02535 -14.89642 -14.19943 -13.98022 -13.78171 -13.45675 -13.31356 -13.19964 -13.11676 -12.94444 -12.66999 -12.19416 -12.12357 -11.96372 -11.86810 -11.70057 -11.66399 -11.63877 -11.43424 -11.35685 -11.18717 -10.92158 -10.81519 -10.67296 -10.43203 -10.26514 -10.24028 -9.90050 -9.57709 -8.94609 -8.74892 -8.50314 -8.35037 -7.73424 -6.04257 -4.13534 0.35480 1.13413 1.58292 3.11394 3.27127 3.46850 3.61028 3.70993 3.75578 3.97791 4.30076 4.45183 4.63022 4.85463 4.92780 5.02529 5.12927 5.18718 5.34388 5.41997 5.53966 5.58342 5.66179 5.66215 5.81108 5.82487 5.88231 6.00236 6.05652 6.15456 6.21161 6.25211 6.32700 6.40080 6.44995 6.50104 6.70153 6.76415 6.78291 6.83822 7.15815 7.23954 7.58266 7.84246 8.11838 8.30842 8.82695 8.96722 9.57667 11.00984 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010053 B = 0.006763 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.448619 B = 4139.348174 C = 5886.179007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.004 3.996 3 C -0.161 4.161 4 C -0.012 4.012 5 C -0.671 4.671 6 S 2.489 3.511 7 C -0.658 4.658 8 O -0.905 6.905 9 O -0.945 6.945 10 C 0.046 3.954 11 C -0.139 4.139 12 C 0.563 3.437 13 O -0.562 6.562 14 N -0.583 5.583 15 C 0.234 3.766 16 C -0.545 4.545 17 H 0.063 0.937 18 C 0.086 3.914 19 N -0.887 5.887 20 Si 0.911 3.089 21 H -0.276 1.276 22 H -0.303 1.303 23 H -0.262 1.262 24 C 0.147 3.853 25 C -0.165 4.165 26 C -0.166 4.166 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.129 0.871 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.170 0.830 36 H 0.036 0.964 37 H 0.035 0.965 38 H 0.264 0.736 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.049 0.951 44 H 0.055 0.945 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.935 5.274 9.567 11.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.003 3.997 3 C -0.180 4.180 4 C -0.031 4.031 5 C -0.758 4.758 6 S 2.667 3.333 7 C -0.807 4.807 8 O -0.902 6.902 9 O -0.943 6.943 10 C 0.027 3.973 11 C -0.143 4.143 12 C 0.351 3.649 13 O -0.443 6.443 14 N -0.313 5.313 15 C 0.115 3.885 16 C -0.582 4.582 17 H 0.081 0.919 18 C -0.119 4.119 19 N -0.524 5.524 20 Si 0.741 3.259 21 H -0.201 1.201 22 H -0.231 1.231 23 H -0.187 1.187 24 C 0.044 3.956 25 C -0.223 4.223 26 C -0.224 4.224 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.146 0.854 31 H 0.153 0.847 32 H 0.149 0.851 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.187 0.813 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.731 5.190 9.100 10.826 hybrid contribution 0.479 -0.164 0.479 0.697 sum -2.252 5.027 9.579 11.049 Atomic orbital electron populations 1.20882 0.90690 1.02592 1.03201 1.20143 0.96189 0.92073 0.91283 1.20900 0.94071 0.97253 1.05729 1.20903 0.94535 0.96389 0.91283 1.30303 1.25424 0.99194 1.20877 1.05716 0.74916 0.75354 0.77269 1.30324 1.11809 1.11671 1.26879 1.93610 1.81505 1.43561 1.71519 1.93541 1.82748 1.44986 1.72996 1.21693 0.93379 0.98110 0.84072 1.19867 0.94161 0.93454 1.06809 1.18105 0.81555 0.83565 0.81700 1.90624 1.36240 1.79214 1.38267 1.48366 1.46295 1.12630 1.23983 1.19553 0.88559 0.97181 0.83250 1.21339 0.91512 1.43004 1.02367 0.91941 1.24823 0.99508 0.93459 0.94143 1.69944 1.33527 1.42012 1.06924 0.86167 0.84759 0.77715 0.77236 1.20065 1.23104 1.18733 1.20869 0.92157 0.84074 0.98519 1.22164 1.01990 0.99611 0.98548 1.22201 0.96015 1.01971 1.02188 0.90045 0.91529 0.91135 0.85355 0.84706 0.85059 0.85558 0.85564 0.81251 0.94640 0.94666 0.92659 0.89566 0.90818 0.92842 0.92417 0.93218 0.92607 0.90825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.68 9.06 36.00 0.33 -1.35 16 2 C 0.00 0.07 5.91 -104.23 -0.62 -0.55 16 3 C -0.16 -2.36 9.67 -39.64 -0.38 -2.75 16 4 C -0.01 -0.18 9.47 -39.49 -0.37 -0.56 16 5 C -0.67 -11.48 5.65 -39.64 -0.22 -11.70 16 6 S 2.49 39.33 5.80 -107.50 -0.62 38.70 16 7 C -0.66 -6.60 10.80 101.05 1.09 -5.51 16 8 O -0.90 -18.40 13.33 -57.54 -0.77 -19.17 16 9 O -0.95 -16.85 17.12 -57.54 -0.98 -17.84 16 10 C 0.05 0.91 7.32 -39.19 -0.29 0.62 16 11 C -0.14 -2.71 4.39 -104.97 -0.46 -3.17 16 12 C 0.56 11.46 5.43 -12.33 -0.07 11.40 16 13 O -0.56 -11.63 12.60 5.32 0.07 -11.56 16 14 N -0.58 -12.08 2.41 -168.58 -0.41 -12.49 16 15 C 0.23 5.59 4.69 -5.20 -0.02 5.56 16 16 C -0.54 -13.89 6.53 -34.44 -0.22 -14.12 16 17 H 0.06 1.59 7.17 -52.49 -0.38 1.22 16 18 C 0.09 2.32 5.46 -17.82 -0.10 2.22 16 19 N -0.89 -25.14 13.29 55.43 0.74 -24.41 16 20 Si 0.91 22.70 26.48 -169.99 -4.50 18.20 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 22 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 23 H -0.26 -6.58 6.68 56.52 0.38 -6.20 16 24 C 0.15 2.67 3.27 -67.93 -0.22 2.45 16 25 C -0.17 -2.80 8.95 37.16 0.33 -2.47 16 26 C -0.17 -2.64 9.24 37.16 0.34 -2.30 16 27 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.07 0.77 8.05 -51.93 -0.42 0.35 16 29 H 0.07 1.11 7.21 -51.93 -0.37 0.74 16 30 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 31 H 0.14 1.69 7.56 -52.49 -0.40 1.30 16 32 H 0.13 1.19 8.14 -51.92 -0.42 0.77 16 33 H 0.13 1.03 8.14 -51.92 -0.42 0.61 16 34 H 0.13 0.98 8.14 -51.92 -0.42 0.56 16 35 H 0.17 3.57 4.81 -52.49 -0.25 3.32 16 36 H 0.04 0.89 7.96 -51.92 -0.41 0.48 16 37 H 0.04 0.91 6.81 -51.93 -0.35 0.55 16 38 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.09 1.57 7.83 -51.93 -0.41 1.16 16 40 H 0.07 1.33 6.22 -51.93 -0.32 1.01 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.07 1.28 6.21 -51.93 -0.32 0.95 16 LS Contribution 369.08 15.07 5.56 5.56 Total: -1.00 -33.13 369.08 -8.41 -41.53 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -6.60 Total: 3.69 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: -0.89 Total: -22.22 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.33 Total: -36.89 kcal Atomic # 8 Polarization: -46.88 SS G_CDS: -1.68 Total: -48.57 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.50 Total: 18.20 kcal Atomic # 16 Polarization: 39.33 SS G_CDS: -0.62 Total: 38.70 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.13 -8.41 -41.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608814347.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.105 kcal (2) G-P(sol) polarization free energy of solvation -33.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds