Wall clock time and date at job start Sat Apr 11 2020 05:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37983 * 120.07079 * 2 1 4 4 C 1.38343 * 120.14393 * 179.97438 * 3 2 1 5 5 C 1.38381 * 120.29083 * 0.02562 * 4 3 2 6 6 S 1.76200 * 119.92511 * 180.02562 * 5 4 3 7 7 C 1.81398 * 104.44717 * 90.00408 * 6 5 4 8 8 O 1.42106 * 104.27762 * 206.07216 * 6 5 4 9 9 O 1.42099 * 104.27858 * 333.93400 * 6 5 4 10 10 C 1.37932 * 120.14499 * 359.74613 * 5 4 3 11 11 C 1.39552 * 120.07690 * 179.97438 * 2 1 3 12 12 C 1.47846 * 120.14378 * 359.97438 * 11 2 1 13 13 O 1.21556 * 119.99938 * 303.49913 * 12 11 2 14 14 N 1.34773 * 120.00322 * 123.49822 * 12 11 2 15 15 C 1.46498 * 119.99649 * 354.35466 * 14 12 11 16 16 C 1.50694 * 109.47333 * 90.00196 * 15 14 12 17 17 H 1.08002 * 120.00249 * 359.97438 * 16 15 14 18 18 C 1.37884 * 120.00304 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99752 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99982 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47451 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46942 * 120.00016 * 20 18 16 23 23 H 1.48493 * 109.47439 * 239.99722 * 20 18 16 24 24 C 1.46494 * 120.00073 * 174.35653 * 14 12 11 25 25 C 1.52998 * 109.47327 * 304.59361 * 24 14 12 26 26 C 1.53004 * 109.47505 * 64.59451 * 24 14 12 27 27 H 1.09003 * 109.47558 * 264.89678 * 1 2 3 28 28 H 1.09005 * 109.47629 * 24.89455 * 1 2 3 29 29 H 1.09001 * 109.47363 * 144.89655 * 1 2 3 30 30 H 1.07999 * 119.92767 * 359.97438 * 3 2 1 31 31 H 1.07995 * 119.85046 * 180.02562 * 4 3 2 32 32 H 1.08999 * 109.47420 * 59.99877 * 7 6 5 33 33 H 1.09003 * 109.47510 * 179.97438 * 7 6 5 34 34 H 1.09002 * 109.47635 * 299.99997 * 7 6 5 35 35 H 1.08000 * 120.07649 * 180.27324 * 10 5 4 36 36 H 1.09010 * 109.47203 * 209.99895 * 15 14 12 37 37 H 1.09005 * 109.47264 * 329.99846 * 15 14 12 38 38 H 0.96997 * 119.99726 * 179.97438 * 19 18 16 39 39 H 1.09003 * 109.47368 * 184.59678 * 24 14 12 40 40 H 1.09000 * 109.47530 * 65.33595 * 25 24 14 41 41 H 1.09002 * 109.47713 * 185.34156 * 25 24 14 42 42 H 1.09003 * 109.47035 * 305.34180 * 25 24 14 43 43 H 1.09003 * 109.46751 * 64.86905 * 26 24 14 44 44 H 1.08999 * 109.47066 * 184.86927 * 26 24 14 45 45 H 1.08998 * 109.46689 * 304.87455 * 26 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1941 0.0000 4 6 3.5818 1.1959 0.0005 5 6 4.2813 0.0019 0.0005 6 16 6.0432 0.0154 0.0019 7 6 6.4944 0.0179 1.7589 8 8 6.4036 -1.2187 -0.6036 9 8 6.3847 1.2553 -0.6024 10 6 3.6023 -1.1987 0.0053 11 6 2.2063 -1.2076 0.0005 12 6 1.4720 -2.4908 0.0017 13 8 0.6662 -2.7292 0.8800 14 7 1.6960 -3.3963 -0.9711 15 6 2.5727 -3.0612 -2.0959 16 6 3.9905 -3.4455 -1.7597 17 1 4.2162 -3.8941 -0.8036 18 6 4.9998 -3.2244 -2.6728 19 7 4.7250 -2.6785 -3.8373 20 14 6.7573 -3.7001 -2.2557 21 1 6.8002 -4.2919 -0.8944 22 1 7.2484 -4.6948 -3.2430 23 1 7.6205 -2.4926 -2.2985 24 6 1.0629 -4.7157 -0.9036 25 6 1.4146 -5.3827 0.4276 26 6 -0.4554 -4.5589 -1.0100 27 1 -0.3634 -0.0914 1.0236 28 1 -0.3634 0.9322 -0.4326 29 1 -0.3634 -0.8407 -0.5910 30 1 1.6583 2.1294 -0.0004 31 1 4.1181 2.1332 0.0010 32 1 6.0939 -0.8754 2.2382 33 1 7.5801 0.0257 1.8553 34 1 6.0803 0.9045 2.2392 35 1 4.1493 -2.1299 0.0097 36 1 2.2494 -3.6056 -2.9833 37 1 2.5227 -1.9895 -2.2888 38 1 5.4350 -2.5227 -4.4795 39 1 1.4228 -5.3340 -1.7260 40 1 0.9733 -4.8146 1.2466 41 1 1.0234 -6.4000 0.4389 42 1 2.4979 -5.4087 0.5460 43 1 -0.7118 -4.1637 -1.9930 44 1 -0.9314 -5.5299 -0.8733 45 1 -0.8044 -3.8713 -0.2396 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608814347.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:07 Heat of formation + Delta-G solvation = -95.055199 kcal Electronic energy + Delta-G solvation = -29517.088841 eV Core-core repulsion = 25626.517273 eV Total energy + Delta-G solvation = -3890.571568 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.53661 -39.57257 -38.02639 -37.07547 -36.83388 -35.05237 -33.94375 -33.47362 -31.60584 -30.31233 -28.98745 -28.25227 -28.01466 -25.24295 -24.59891 -23.25948 -22.54090 -20.63326 -19.44714 -18.62909 -18.52184 -17.36533 -17.25065 -17.10297 -16.89272 -16.47681 -16.21518 -15.98908 -15.35285 -15.25387 -14.78174 -14.62731 -14.41846 -14.23668 -14.03015 -13.98283 -13.96391 -13.55386 -13.34911 -13.19366 -13.18115 -13.02826 -13.00055 -12.94569 -12.78771 -12.62911 -12.53584 -12.44003 -12.16545 -12.05823 -11.83888 -11.71447 -11.56266 -11.46938 -10.52559 -10.43025 -10.00245 -9.85566 -9.45009 -8.13656 -6.25123 -0.79255 -0.16962 0.24116 1.42696 1.60215 1.68376 1.71860 2.02903 2.25140 2.51308 2.65291 3.13317 3.22863 3.34700 3.60742 3.81634 3.92189 4.08530 4.09553 4.13084 4.25980 4.27419 4.40004 4.44250 4.63074 4.69678 4.70386 4.74941 4.79615 4.91043 4.91446 4.98978 5.00162 5.03761 5.05479 5.12384 5.18493 5.23433 5.30640 5.41424 5.47325 5.72509 5.88325 5.93037 6.08038 6.56519 6.85080 7.29862 7.49520 8.91307 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010053 B = 0.006763 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.448619 B = 4139.348174 C = 5886.179007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.007 4.007 3 C -0.151 4.151 4 C -0.013 4.013 5 C -0.677 4.677 6 S 2.481 3.519 7 C -0.623 4.623 8 O -0.963 6.963 9 O -0.975 6.975 10 C 0.024 3.976 11 C -0.170 4.170 12 C 0.563 3.437 13 O -0.568 6.568 14 N -0.589 5.589 15 C 0.255 3.745 16 C -0.529 4.529 17 H 0.057 0.943 18 C 0.051 3.949 19 N -0.920 5.920 20 Si 0.948 3.052 21 H -0.269 1.269 22 H -0.303 1.303 23 H -0.270 1.270 24 C 0.135 3.865 25 C -0.155 4.155 26 C -0.153 4.153 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.048 0.952 30 H 0.171 0.829 31 H 0.165 0.835 32 H 0.146 0.854 33 H 0.155 0.845 34 H 0.161 0.839 35 H 0.145 0.855 36 H 0.019 0.981 37 H 0.014 0.986 38 H 0.262 0.738 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.084 0.916 42 H 0.039 0.961 43 H 0.047 0.953 44 H 0.085 0.915 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.439 6.673 11.753 13.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.008 4.008 3 C -0.169 4.169 4 C -0.032 4.032 5 C -0.764 4.764 6 S 2.664 3.336 7 C -0.776 4.776 8 O -0.960 6.960 9 O -0.972 6.972 10 C 0.005 3.995 11 C -0.174 4.174 12 C 0.352 3.648 13 O -0.450 6.450 14 N -0.319 5.319 15 C 0.134 3.866 16 C -0.566 4.566 17 H 0.075 0.925 18 C -0.150 4.150 19 N -0.559 5.559 20 Si 0.777 3.223 21 H -0.193 1.193 22 H -0.231 1.231 23 H -0.196 1.196 24 C 0.032 3.968 25 C -0.213 4.213 26 C -0.211 4.211 27 H 0.106 0.894 28 H 0.117 0.883 29 H 0.067 0.933 30 H 0.189 0.811 31 H 0.183 0.817 32 H 0.164 0.836 33 H 0.173 0.827 34 H 0.179 0.821 35 H 0.162 0.838 36 H 0.037 0.963 37 H 0.032 0.968 38 H 0.071 0.929 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.103 0.897 42 H 0.059 0.941 43 H 0.066 0.934 44 H 0.103 0.897 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.274 6.570 11.259 13.441 hybrid contribution 0.616 -0.510 -0.036 0.801 sum -2.658 6.060 11.223 13.029 Atomic orbital electron populations 1.20896 0.89078 1.03391 1.03485 1.20517 0.97527 0.91842 0.90886 1.21388 0.94079 0.98077 1.03351 1.21364 0.95129 0.96772 0.89890 1.30483 1.26290 0.99080 1.20519 1.05636 0.74105 0.73675 0.80151 1.30031 1.13901 1.14223 1.19467 1.93518 1.81924 1.45370 1.75184 1.93496 1.82656 1.45187 1.75844 1.21442 0.93537 0.98182 0.86336 1.20011 0.94413 0.94062 1.08929 1.18309 0.81352 0.83886 0.81237 1.90599 1.36618 1.79509 1.38256 1.48329 1.46242 1.13912 1.23407 1.19065 0.88398 0.95433 0.83721 1.21416 0.92215 1.41422 1.01579 0.92454 1.25292 1.01758 0.93800 0.94186 1.70013 1.33998 1.44080 1.07805 0.85599 0.82347 0.77070 0.77265 1.19330 1.23112 1.19553 1.21149 0.93568 0.83002 0.99090 1.22069 1.00825 1.01102 0.97261 1.22087 0.94215 1.03269 1.01570 0.89356 0.88274 0.93292 0.81141 0.81735 0.83565 0.82725 0.82110 0.83809 0.96316 0.96790 0.92919 0.89926 0.91936 0.89676 0.94137 0.93364 0.89651 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.02 9.06 71.23 0.65 -2.38 16 2 C -0.01 -0.22 5.91 -19.61 -0.12 -0.34 16 3 C -0.15 -4.00 9.67 22.23 0.21 -3.78 16 4 C -0.01 -0.36 9.47 22.33 0.21 -0.15 16 5 C -0.68 -22.83 5.65 22.23 0.13 -22.70 16 6 S 2.48 76.60 5.80 -56.49 -0.33 76.27 16 7 C -0.62 -10.11 10.80 113.37 1.22 -8.88 16 8 O -0.96 -40.05 13.33 -127.65 -1.70 -41.76 16 9 O -0.97 -33.97 17.12 -127.65 -2.18 -36.16 16 10 C 0.02 0.97 7.32 22.53 0.16 1.13 16 11 C -0.17 -6.71 4.39 -20.09 -0.09 -6.80 16 12 C 0.56 23.41 5.43 86.79 0.47 23.88 16 13 O -0.57 -23.65 12.60 -3.89 -0.05 -23.70 16 14 N -0.59 -25.13 2.41 -805.54 -1.94 -27.07 16 15 C 0.25 12.68 4.69 85.63 0.40 13.08 16 16 C -0.53 -27.98 6.53 25.60 0.17 -27.81 16 17 H 0.06 3.05 7.17 -2.91 -0.02 3.03 16 18 C 0.05 2.85 5.46 84.66 0.46 3.31 16 19 N -0.92 -54.07 13.29 21.45 0.28 -53.79 16 20 Si 0.95 47.79 26.48 68.60 1.82 49.60 16 21 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 22 H -0.30 -14.98 7.11 99.48 0.71 -14.27 16 23 H -0.27 -13.83 6.68 99.48 0.66 -13.16 16 24 C 0.13 4.91 3.27 44.99 0.15 5.05 16 25 C -0.15 -5.19 8.95 71.98 0.64 -4.54 16 26 C -0.15 -4.78 9.24 71.98 0.67 -4.11 16 27 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.10 1.98 8.05 -2.38 -0.02 1.96 16 29 H 0.05 1.52 7.21 -2.39 -0.02 1.51 16 30 H 0.17 3.03 8.06 -2.91 -0.02 3.01 16 31 H 0.17 3.58 7.56 -2.91 -0.02 3.56 16 32 H 0.15 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.15 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.16 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.14 6.38 4.81 -2.91 -0.01 6.37 16 36 H 0.02 0.99 7.96 -2.38 -0.02 0.97 16 37 H 0.01 0.76 6.81 -2.38 -0.02 0.74 16 38 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 39 H 0.08 3.04 7.83 -2.39 -0.02 3.02 16 40 H 0.06 2.23 6.22 -2.39 -0.01 2.22 16 41 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.06 2.04 6.21 -2.39 -0.01 2.03 16 Total: -1.00 -75.97 369.08 2.19 -73.78 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 0.95 Total: 17.84 kcal Atomic # 6 Polarization: -40.37 SS G_CDS: 5.34 Total: -35.03 kcal Atomic # 7 Polarization: -79.20 SS G_CDS: -1.65 Total: -80.85 kcal Atomic # 8 Polarization: -97.68 SS G_CDS: -3.94 Total: -101.61 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 1.82 Total: 49.60 kcal Atomic # 16 Polarization: 76.60 SS G_CDS: -0.33 Total: 76.27 kcal Total: -75.97 2.19 -73.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608814347.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.278 kcal (2) G-P(sol) polarization free energy of solvation -75.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds