Wall clock time and date at job start Sat Apr 11 2020 05:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38385 * 119.84952 * 2 1 4 4 C 1.37939 * 120.14601 * 179.97438 * 3 2 1 5 5 C 1.39603 * 119.84871 * 0.02875 * 4 3 2 6 6 C 1.47843 * 120.13997 * 179.97438 * 5 4 3 7 7 O 1.21548 * 120.00141 * 44.50725 * 6 5 4 8 8 N 1.34778 * 119.99726 * 224.49941 * 6 5 4 9 9 C 1.46498 * 119.99741 * 185.62397 * 8 6 5 10 10 C 1.50701 * 109.47219 * 90.00219 * 9 8 6 11 11 H 1.08005 * 119.99813 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00304 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00111 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00295 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47066 * 60.00388 * 14 12 10 16 16 H 1.48497 * 109.47497 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47231 * 300.00678 * 14 12 10 18 18 C 1.46495 * 120.00082 * 5.62658 * 8 6 5 19 19 C 1.53006 * 109.47115 * 125.13773 * 18 8 6 20 20 C 1.52997 * 109.47170 * 245.13915 * 18 8 6 21 21 C 1.39552 * 119.71300 * 359.72033 * 5 4 3 22 22 C 1.37985 * 119.85382 * 0.50963 * 21 5 4 23 23 S 1.76195 * 119.92977 * 179.79406 * 22 21 5 24 24 C 1.81398 * 104.45338 * 114.72188 * 23 22 21 25 25 O 1.42098 * 104.27656 * 358.64869 * 23 22 21 26 26 O 1.42103 * 104.27643 * 230.79358 * 23 22 21 27 27 H 1.08996 * 109.47546 * 270.01737 * 1 2 3 28 28 H 1.09006 * 109.47437 * 30.02327 * 1 2 3 29 29 H 1.09006 * 109.47136 * 150.02117 * 1 2 3 30 30 H 1.07998 * 119.92728 * 0.02562 * 3 2 1 31 31 H 1.07993 * 120.07640 * 180.02562 * 4 3 2 32 32 H 1.08998 * 109.47389 * 210.00263 * 9 8 6 33 33 H 1.09003 * 109.47451 * 330.00265 * 9 8 6 34 34 H 0.97000 * 120.00321 * 179.97438 * 13 12 10 35 35 H 1.09005 * 109.47506 * 5.14153 * 18 8 6 36 36 H 1.09005 * 109.46624 * 59.99839 * 19 18 8 37 37 H 1.08993 * 109.47189 * 179.97438 * 19 18 8 38 38 H 1.08997 * 109.47086 * 300.00630 * 19 18 8 39 39 H 1.08993 * 109.47134 * 60.00154 * 20 18 8 40 40 H 1.09000 * 109.46863 * 180.02562 * 20 18 8 41 41 H 1.08999 * 109.46998 * 300.00053 * 20 18 8 42 42 H 1.08000 * 120.07754 * 180.27610 * 21 5 4 43 43 H 1.08999 * 109.46733 * 291.62215 * 24 23 22 44 44 H 1.09002 * 109.47205 * 171.62323 * 24 23 22 45 45 H 1.09004 * 109.47236 * 51.62323 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2003 0.0000 4 6 3.5751 1.2074 0.0005 5 6 4.2762 0.0002 0.0005 6 6 5.7546 0.0003 0.0005 7 8 6.3623 0.7510 0.7384 8 7 6.4285 -0.8321 -0.8177 9 6 7.8882 -0.9213 -0.7312 10 6 8.2683 -1.9927 0.2581 11 1 7.4993 -2.5516 0.7708 12 6 9.5976 -2.2602 0.5080 13 7 10.5339 -1.5800 -0.1166 14 14 10.0687 -3.5887 1.7338 15 1 9.5184 -4.8933 1.2857 16 1 11.5483 -3.6791 1.8216 17 1 9.5137 -3.2498 3.0688 18 6 5.7014 -1.6477 -1.7935 19 6 6.2656 -1.3927 -3.1927 20 6 5.8611 -3.1279 -1.4411 21 6 3.5755 -1.2066 0.0058 22 6 2.1956 -1.1997 0.0004 23 16 1.3089 -2.7223 0.0016 24 6 0.4401 -2.7390 1.5939 25 8 2.3223 -3.7180 -0.0239 26 8 0.3844 -2.5903 -1.0695 27 1 -0.3634 0.0003 1.0276 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5135 30 1 1.6521 2.1334 0.0004 31 1 4.1115 2.1447 0.0010 32 1 8.2958 -1.1704 -1.7109 33 1 8.2920 0.0364 -0.4025 34 1 11.4691 -1.7679 0.0594 35 1 4.6445 -1.3815 -1.7740 36 1 7.3225 -1.6588 -3.2123 37 1 5.7249 -1.9998 -3.9187 38 1 6.1519 -0.3381 -3.4437 39 1 5.4592 -3.3095 -0.4444 40 1 5.3205 -3.7347 -2.1675 41 1 6.9179 -3.3940 -1.4607 42 1 4.1119 -2.1440 0.0103 43 1 1.1645 -2.8408 2.4019 44 1 -0.2541 -3.5789 1.6202 45 1 -0.1122 -1.8072 1.7162 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608814543.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:09 Heat of formation + Delta-G solvation = -95.892879 kcal Electronic energy + Delta-G solvation = -28673.715400 eV Core-core repulsion = 24783.107507 eV Total energy + Delta-G solvation = -3890.607893 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.60695 -39.74237 -38.23461 -37.75057 -36.99628 -35.05718 -34.07117 -32.58073 -32.44525 -30.39858 -29.77985 -28.28875 -27.92979 -25.15637 -24.39680 -23.55878 -22.50426 -20.81757 -19.66439 -18.72417 -18.63408 -17.76783 -17.33415 -17.03244 -16.97700 -16.80869 -16.32444 -16.13070 -15.46589 -15.37246 -15.10365 -14.92790 -14.50557 -14.28354 -14.05578 -14.01584 -13.88552 -13.57573 -13.44470 -13.35638 -13.30067 -13.14444 -13.02670 -12.97165 -12.82797 -12.63656 -12.57625 -12.49280 -12.31386 -12.13508 -11.90277 -11.78953 -11.63599 -11.54719 -10.83567 -10.62253 -10.47309 -9.84666 -9.52427 -8.21747 -6.34077 -0.89673 -0.35370 -0.06870 1.35598 1.39095 1.46261 1.63559 1.86643 2.15359 2.34897 2.43632 2.90949 3.07862 3.17710 3.42535 3.66927 3.71065 3.85073 3.96741 4.08241 4.10894 4.16864 4.27925 4.31516 4.42354 4.55282 4.68489 4.72463 4.74588 4.77651 4.85376 4.93321 4.94072 4.96011 5.05192 5.11247 5.23415 5.24071 5.26731 5.34208 5.48233 5.57568 5.70565 5.80621 6.06676 6.61673 6.73006 7.18763 7.37349 8.85814 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014341 B = 0.003908 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.035236 B = 7163.659709 C = 7782.493140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.033 3.967 3 C -0.134 4.134 4 C -0.027 4.027 5 C -0.165 4.165 6 C 0.539 3.461 7 O -0.590 6.590 8 N -0.586 5.586 9 C 0.261 3.739 10 C -0.533 4.533 11 H 0.054 0.946 12 C 0.011 3.989 13 N -0.927 5.927 14 Si 0.961 3.039 15 H -0.262 1.262 16 H -0.278 1.278 17 H -0.278 1.278 18 C 0.117 3.883 19 C -0.156 4.156 20 C -0.158 4.158 21 C -0.007 4.007 22 C -0.672 4.672 23 S 2.494 3.506 24 C -0.629 4.629 25 O -0.976 6.976 26 O -0.955 6.955 27 H 0.122 0.878 28 H 0.109 0.891 29 H 0.101 0.899 30 H 0.177 0.823 31 H 0.136 0.864 32 H 0.033 0.967 33 H -0.002 1.002 34 H 0.266 0.734 35 H 0.098 0.902 36 H 0.050 0.950 37 H 0.096 0.904 38 H 0.055 0.945 39 H 0.047 0.953 40 H 0.086 0.914 41 H 0.057 0.943 42 H 0.139 0.861 43 H 0.148 0.852 44 H 0.164 0.836 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.752 0.198 -0.037 27.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.032 3.968 3 C -0.153 4.153 4 C -0.046 4.046 5 C -0.169 4.169 6 C 0.328 3.672 7 O -0.472 6.472 8 N -0.315 5.315 9 C 0.140 3.860 10 C -0.572 4.572 11 H 0.072 0.928 12 C -0.188 4.188 13 N -0.567 5.567 14 Si 0.786 3.214 15 H -0.186 1.186 16 H -0.203 1.203 17 H -0.203 1.203 18 C 0.015 3.985 19 C -0.213 4.213 20 C -0.216 4.216 21 C -0.026 4.026 22 C -0.757 4.757 23 S 2.677 3.323 24 C -0.783 4.783 25 O -0.974 6.974 26 O -0.952 6.952 27 H 0.141 0.859 28 H 0.128 0.872 29 H 0.120 0.880 30 H 0.194 0.806 31 H 0.153 0.847 32 H 0.050 0.950 33 H 0.016 0.984 34 H 0.075 0.925 35 H 0.116 0.884 36 H 0.069 0.931 37 H 0.115 0.885 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.105 0.895 41 H 0.076 0.924 42 H 0.157 0.843 43 H 0.166 0.834 44 H 0.182 0.818 45 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -27.176 -0.019 -0.414 27.179 hybrid contribution 1.724 0.270 1.092 2.059 sum -25.452 0.251 0.679 25.462 Atomic orbital electron populations 1.21928 0.87322 1.08120 1.06338 1.20163 0.97800 0.90904 0.87930 1.21510 0.92366 0.99803 1.01581 1.21641 0.95582 0.96526 0.90811 1.20009 0.91829 0.96121 1.08918 1.18913 0.88056 0.80099 0.80181 1.90702 1.70998 1.42685 1.42842 1.48292 1.08641 1.39681 1.34908 1.18799 0.74918 0.95557 0.96681 1.21604 0.92148 1.19059 1.24341 0.92822 1.25777 0.96207 0.98844 0.98013 1.70042 1.00680 1.42233 1.43760 0.85564 0.77251 0.79592 0.79026 1.18617 1.20274 1.20348 1.21554 0.96456 0.91593 0.88912 1.22111 1.01839 1.02248 0.95150 1.22190 1.02976 0.94814 1.01591 1.21248 0.93412 0.97926 0.90028 1.30530 1.04299 1.20659 1.20211 1.05308 0.74838 0.72833 0.79312 1.30145 1.15200 1.15040 1.17931 1.93557 1.58400 1.57350 1.88054 1.93513 1.63787 1.85519 1.52406 0.85948 0.87244 0.88027 0.80582 0.84658 0.94957 0.98392 0.92468 0.88424 0.93133 0.88540 0.92553 0.93361 0.89519 0.92438 0.84324 0.83396 0.81832 0.81909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.49 8.47 71.23 0.60 -0.89 16 2 C 0.03 0.57 5.87 -19.81 -0.12 0.45 16 3 C -0.13 -2.46 9.68 22.23 0.22 -2.24 16 4 C -0.03 -0.73 9.69 22.53 0.22 -0.52 16 5 C -0.16 -5.79 4.95 -20.09 -0.10 -5.89 16 6 C 0.54 25.09 7.25 86.79 0.63 25.72 16 7 O -0.59 -32.64 16.53 -3.87 -0.06 -32.71 16 8 N -0.59 -27.29 2.39 -805.54 -1.92 -29.21 16 9 C 0.26 14.62 4.77 85.63 0.41 15.03 16 10 C -0.53 -31.33 7.85 25.60 0.20 -31.13 16 11 H 0.05 3.14 7.59 -2.91 -0.02 3.12 16 12 C 0.01 0.62 5.46 84.65 0.46 1.08 16 13 N -0.93 -56.92 13.29 21.45 0.28 -56.63 16 14 Si 0.96 45.96 29.54 68.60 2.03 47.98 16 15 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 16 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 17 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 18 C 0.12 4.37 2.40 44.99 0.11 4.48 16 19 C -0.16 -5.11 9.07 71.98 0.65 -4.45 16 20 C -0.16 -5.88 8.21 71.98 0.59 -5.29 16 21 C -0.01 -0.21 6.86 22.53 0.15 -0.06 16 22 C -0.67 -15.04 5.57 22.23 0.12 -14.92 16 23 S 2.49 45.21 5.20 -56.49 -0.29 44.92 16 24 C -0.63 -3.74 10.63 113.37 1.20 -2.53 16 25 O -0.98 -26.57 16.73 -127.65 -2.14 -28.70 16 26 O -0.96 -20.29 15.34 -127.65 -1.96 -22.24 16 27 H 0.12 0.15 6.98 -2.39 -0.02 0.13 16 28 H 0.11 0.54 8.08 -2.38 -0.02 0.53 16 29 H 0.10 1.02 4.87 -2.38 -0.01 1.01 16 30 H 0.18 1.75 8.06 -2.91 -0.02 1.73 16 31 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 32 H 0.03 1.83 6.17 -2.39 -0.01 1.81 16 33 H 0.00 -0.13 7.35 -2.39 -0.02 -0.15 16 34 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 35 H 0.10 3.26 4.77 -2.38 -0.01 3.25 16 36 H 0.05 1.87 6.52 -2.38 -0.02 1.86 16 37 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.05 1.87 6.55 -2.39 -0.02 1.85 16 40 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.06 2.44 6.93 -2.39 -0.02 2.42 16 42 H 0.14 4.74 4.24 -2.91 -0.01 4.73 16 43 H 0.15 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.16 0.18 8.14 -2.39 -0.02 0.16 16 45 H 0.16 0.06 5.85 -2.39 -0.01 0.04 16 Total: -1.00 -87.56 368.09 2.31 -85.25 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 1.02 Total: 12.50 kcal Atomic # 6 Polarization: -26.51 SS G_CDS: 5.36 Total: -21.15 kcal Atomic # 7 Polarization: -84.21 SS G_CDS: -1.64 Total: -85.85 kcal Atomic # 8 Polarization: -79.50 SS G_CDS: -4.16 Total: -83.66 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.98 kcal Atomic # 16 Polarization: 45.21 SS G_CDS: -0.29 Total: 44.92 kcal Total: -87.56 2.31 -85.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608814543.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.643 kcal (2) G-P(sol) polarization free energy of solvation -87.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds