Wall clock time and date at job start Sat Apr 11 2020 05:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.46903 * 2 1 4 4 C 1.34775 * 120.00161 * 62.18585 * 3 2 1 5 5 O 1.21551 * 119.99928 * 359.97438 * 4 3 2 6 6 C 1.47889 * 120.00100 * 179.97438 * 4 3 2 7 7 C 1.39921 * 120.02142 * 359.71680 * 6 4 3 8 8 C 1.38327 * 120.35489 * 179.79131 * 7 6 4 9 9 C 1.37753 * 120.41208 * 0.46626 * 8 7 6 10 10 C 1.40742 * 120.04201 * 359.79120 * 9 8 7 11 11 C 1.41437 * 120.18242 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99614 * 335.06838 * 11 10 9 13 13 C 1.39933 * 120.00191 * 155.05929 * 11 10 9 14 14 N 1.30836 * 120.00010 * 343.53614 * 13 11 10 15 15 Si 1.86802 * 120.00004 * 163.53653 * 13 11 10 16 16 H 1.48496 * 109.47087 * 60.00003 * 15 13 11 17 17 H 1.48496 * 109.46866 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47147 * 299.99993 * 15 13 11 19 19 C 1.38987 * 120.02552 * 180.02562 * 6 4 3 20 20 C 1.50706 * 109.46581 * 119.99784 * 2 1 3 21 21 O 1.20820 * 120.00196 * 25.00275 * 20 2 1 22 22 O 1.34228 * 119.99448 * 205.00073 * 20 2 1 23 23 C 1.50699 * 109.47186 * 239.99655 * 2 1 3 24 24 C 1.38233 * 119.99902 * 273.82182 * 23 2 1 25 25 C 1.38234 * 119.99607 * 180.02562 * 24 23 2 26 26 C 1.38237 * 120.00165 * 359.95491 * 25 24 23 27 27 C 1.38229 * 119.99711 * 0.28113 * 26 25 24 28 28 C 1.38230 * 119.99675 * 93.79851 * 23 2 1 29 29 H 1.08999 * 109.47632 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47212 * 300.00407 * 1 2 3 31 31 H 1.09001 * 109.47078 * 60.00011 * 1 2 3 32 32 H 0.96994 * 119.99659 * 242.17394 * 3 2 1 33 33 H 1.07999 * 119.82018 * 0.02562 * 7 6 4 34 34 H 1.08006 * 119.79130 * 180.23824 * 8 7 6 35 35 H 1.08008 * 119.97661 * 179.76501 * 9 8 7 36 36 H 0.96992 * 119.99799 * 180.02562 * 14 13 11 37 37 H 1.07993 * 120.20495 * 359.94754 * 19 6 4 38 38 H 0.96702 * 116.99813 * 180.02562 * 22 20 2 39 39 H 1.08000 * 120.00050 * 359.97438 * 24 23 2 40 40 H 1.08011 * 119.99914 * 179.97438 * 25 24 23 41 41 H 1.08000 * 119.99393 * 179.97438 * 26 25 24 42 42 H 1.08003 * 119.99848 * 179.72414 * 27 26 25 43 43 H 1.07994 * 120.00321 * 0.02562 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.7295 2.1981 1.0323 5 8 1.0634 1.7890 1.9632 6 6 2.2228 3.5923 1.0326 7 6 2.9946 4.0620 -0.0359 8 6 3.4560 5.3660 -0.0448 9 6 3.1695 6.2142 1.0020 10 6 2.3991 5.7580 2.0880 11 6 2.1036 6.6263 3.1647 12 1 2.7534 7.4622 3.3783 13 6 0.9693 6.4025 3.9530 14 7 0.0193 5.6124 3.5229 15 14 0.8116 7.2318 5.6194 16 1 0.8409 8.7060 5.4434 17 1 -0.4721 6.8336 6.2508 18 1 1.9407 6.8145 6.4888 19 6 1.9257 4.4350 2.0971 20 6 2.0323 -0.7104 1.2306 21 8 1.3395 -1.5362 1.7764 22 8 3.2492 -0.4257 1.7201 23 6 2.0324 -0.7105 -1.2304 24 6 2.1875 -2.0840 -1.2204 25 6 2.6488 -2.7356 -2.3489 26 6 2.9541 -2.0138 -3.4877 27 6 2.8035 -0.6397 -3.4959 28 6 2.3375 0.0114 -2.3691 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.5496 1.7077 -0.7429 33 1 3.2280 3.4039 -0.8598 34 1 4.0478 5.7201 -0.8760 35 1 3.5366 7.2299 0.9896 36 1 -0.7671 5.4576 4.0692 37 1 1.3339 4.0755 2.9259 38 1 3.5280 -0.9073 2.5109 39 1 1.9491 -2.6480 -0.3307 40 1 2.7705 -3.8088 -2.3411 41 1 3.3149 -2.5229 -4.3691 42 1 3.0462 -0.0752 -4.3841 43 1 2.2163 1.0845 -2.3768 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610847815.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:22 Heat of formation + Delta-G solvation = -75.147848 kcal Electronic energy + Delta-G solvation = -29101.458475 eV Core-core repulsion = 25076.306203 eV Total energy + Delta-G solvation = -4025.152272 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.16060 -39.19100 -38.97426 -37.12547 -36.07857 -35.29923 -33.78857 -31.97635 -31.11412 -30.16786 -29.51016 -29.05153 -25.57190 -25.20699 -23.58333 -22.64121 -22.26543 -21.02505 -20.21849 -19.50982 -18.26256 -18.00642 -17.21722 -16.89246 -16.12368 -15.65074 -15.29016 -15.12165 -14.82798 -14.69928 -14.53623 -14.16803 -13.96349 -13.61535 -13.41908 -13.22032 -12.98261 -12.81788 -12.57030 -12.47149 -12.16205 -11.99976 -11.68470 -11.47311 -11.39310 -11.26718 -11.17668 -11.10749 -10.79804 -10.54253 -10.51384 -10.06255 -9.74291 -9.24753 -9.22978 -9.20334 -9.08154 -8.86090 -7.68637 -7.55521 -6.81972 -4.44981 0.99464 1.11939 2.10352 2.26037 2.78936 2.99768 3.06198 3.07847 3.14287 3.32282 3.55762 3.79105 3.89967 4.24819 4.59596 4.64237 4.73211 4.86283 4.94274 5.19272 5.22864 5.31655 5.55721 5.56761 5.62329 5.72526 5.79705 5.81300 6.03035 6.14982 6.17140 6.22409 6.23571 6.31525 6.56462 6.61500 6.67001 6.68984 6.94011 6.96644 7.17784 7.33581 7.62786 7.68550 7.85946 7.96693 7.99574 8.13876 8.46326 8.74619 8.78672 8.81145 10.12278 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017532 B = 0.003165 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.736272 B = 8844.984668 C = 9846.570353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.237 3.763 3 N -0.724 5.724 4 C 0.571 3.429 5 O -0.537 6.537 6 C -0.126 4.126 7 C -0.217 4.217 8 C -0.096 4.096 9 C -0.210 4.210 10 C 0.099 3.901 11 C -0.459 4.459 12 H 0.081 0.919 13 C 0.073 3.927 14 N -0.784 5.784 15 Si 0.911 3.089 16 H -0.265 1.265 17 H -0.277 1.277 18 H -0.263 1.263 19 C -0.089 4.089 20 C 0.494 3.506 21 O -0.512 6.512 22 O -0.502 6.502 23 C -0.085 4.085 24 C -0.110 4.110 25 C -0.113 4.113 26 C -0.116 4.116 27 C -0.112 4.112 28 C -0.104 4.104 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.405 0.595 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.285 0.715 37 H 0.135 0.865 38 H 0.406 0.594 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.129 0.871 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.471 -12.708 -11.344 17.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.148 3.852 3 N -0.382 5.382 4 C 0.363 3.637 5 O -0.414 6.414 6 C -0.129 4.129 7 C -0.237 4.237 8 C -0.115 4.115 9 C -0.230 4.230 10 C 0.096 3.904 11 C -0.488 4.488 12 H 0.099 0.901 13 C -0.146 4.146 14 N -0.408 5.408 15 Si 0.736 3.264 16 H -0.189 1.189 17 H -0.202 1.202 18 H -0.187 1.187 19 C -0.109 4.109 20 C 0.335 3.665 21 O -0.399 6.399 22 O -0.312 6.312 23 C -0.086 4.086 24 C -0.128 4.128 25 C -0.131 4.131 26 C -0.134 4.134 27 C -0.130 4.130 28 C -0.123 4.123 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.244 0.756 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.153 0.847 38 H 0.265 0.735 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.146 0.854 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.421 -13.096 -10.791 17.310 hybrid contribution 0.296 0.190 0.856 0.926 sum 3.718 -12.905 -9.934 16.705 Atomic orbital electron populations 1.22157 0.89852 1.03894 1.04915 1.18782 0.95853 0.82456 0.88076 1.46177 1.57263 1.09452 1.25277 1.18922 0.78204 0.86098 0.80484 1.90709 1.38962 1.76487 1.35250 1.19352 1.03628 0.91348 0.98605 1.20314 1.07487 0.96694 0.99245 1.20427 0.99679 0.93726 0.97638 1.21112 1.08087 0.98423 0.95415 1.17593 0.89920 0.91418 0.91448 1.19567 1.07490 1.11126 1.10596 0.90086 1.25967 0.94790 0.94435 0.99456 1.69767 1.05673 1.28902 1.36483 0.86308 0.78517 0.80147 0.81468 1.18944 1.20209 1.18732 1.21661 0.99813 0.92246 0.97164 1.23385 0.78747 0.79591 0.84799 1.90677 1.56817 1.33417 1.58963 1.84575 1.34479 1.65524 1.46643 1.19452 1.01068 0.94090 0.93943 1.21077 0.99035 0.93372 0.99312 1.21115 0.99049 1.00072 0.92879 1.21235 0.99617 0.94335 0.98220 1.21156 0.99061 0.94667 0.98125 1.20956 0.98651 1.00259 0.92394 0.90586 0.89070 0.90716 0.75567 0.89351 0.88821 0.88565 0.90352 0.84708 0.73536 0.85641 0.85621 0.85736 0.85355 0.85247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 7.95 37.16 0.30 -2.02 16 2 C 0.24 3.63 0.86 -134.12 -0.12 3.52 16 3 N -0.72 -11.99 4.64 -50.69 -0.24 -12.23 16 4 C 0.57 12.16 7.04 -12.31 -0.09 12.08 16 5 O -0.54 -13.00 13.58 5.32 0.07 -12.93 16 6 C -0.13 -2.90 5.87 -105.04 -0.62 -3.52 16 7 C -0.22 -4.42 9.55 -38.92 -0.37 -4.79 16 8 C -0.10 -1.99 10.01 -39.73 -0.40 -2.39 16 9 C -0.21 -4.88 9.78 -38.81 -0.38 -5.26 16 10 C 0.10 2.56 5.57 -106.87 -0.60 1.97 16 11 C -0.46 -11.88 9.06 -37.73 -0.34 -12.22 16 12 H 0.08 1.98 7.90 -52.49 -0.41 1.57 16 13 C 0.07 1.82 5.17 -17.34 -0.09 1.73 16 14 N -0.78 -20.52 10.91 55.55 0.61 -19.92 16 15 Si 0.91 18.66 29.59 -169.99 -5.03 13.63 16 16 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 17 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 18 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 19 C -0.09 -2.32 8.23 -38.44 -0.32 -2.64 16 20 C 0.49 8.28 4.44 36.01 0.16 8.44 16 21 O -0.51 -9.33 16.27 -18.75 -0.30 -9.63 16 22 O -0.50 -7.67 12.96 -39.25 -0.51 -8.18 16 23 C -0.08 -1.06 4.81 -104.63 -0.50 -1.56 16 24 C -0.11 -1.26 9.15 -39.58 -0.36 -1.62 16 25 C -0.11 -1.04 10.05 -39.58 -0.40 -1.44 16 26 C -0.12 -0.96 10.05 -39.59 -0.40 -1.36 16 27 C -0.11 -0.99 10.05 -39.59 -0.40 -1.39 16 28 C -0.10 -1.12 9.03 -39.58 -0.36 -1.47 16 29 H 0.08 1.07 7.87 -51.93 -0.41 0.66 16 30 H 0.09 1.69 6.32 -51.93 -0.33 1.36 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.41 5.81 4.40 -40.82 -0.18 5.63 16 33 H 0.09 1.46 6.38 -52.49 -0.33 1.13 16 34 H 0.09 1.63 8.06 -52.48 -0.42 1.20 16 35 H 0.10 2.07 8.06 -52.48 -0.42 1.65 16 36 H 0.29 6.91 8.30 -40.82 -0.34 6.57 16 37 H 0.14 3.83 5.72 -52.49 -0.30 3.53 16 38 H 0.41 4.39 9.10 45.56 0.41 4.81 16 39 H 0.13 1.49 6.73 -52.49 -0.35 1.14 16 40 H 0.13 0.87 8.06 -52.48 -0.42 0.44 16 41 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16 43 H 0.13 1.28 6.44 -52.49 -0.34 0.94 16 LS Contribution 363.50 15.07 5.48 5.48 Total: -1.00 -31.68 363.50 -9.11 -40.79 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -3.91 Total: 16.93 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -5.27 Total: -13.95 kcal Atomic # 7 Polarization: -32.51 SS G_CDS: 0.37 Total: -32.14 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -0.74 Total: -30.74 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.68 -9.11 -40.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610847815.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.359 kcal (2) G-P(sol) polarization free energy of solvation -31.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds