Wall clock time and date at job start Sat Apr 11 2020 05:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.46903 * 2 1 4 4 C 1.34775 * 120.00161 * 62.18585 * 3 2 1 5 5 O 1.21551 * 119.99928 * 359.97438 * 4 3 2 6 6 C 1.47889 * 120.00100 * 179.97438 * 4 3 2 7 7 C 1.39921 * 120.02142 * 359.71680 * 6 4 3 8 8 C 1.38327 * 120.35489 * 179.79131 * 7 6 4 9 9 C 1.37753 * 120.41208 * 0.46626 * 8 7 6 10 10 C 1.40742 * 120.04201 * 359.79120 * 9 8 7 11 11 C 1.41437 * 120.18242 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99614 * 335.06838 * 11 10 9 13 13 C 1.39933 * 120.00191 * 155.05929 * 11 10 9 14 14 N 1.30836 * 120.00010 * 343.53614 * 13 11 10 15 15 Si 1.86802 * 120.00004 * 163.53653 * 13 11 10 16 16 H 1.48496 * 109.47087 * 60.00003 * 15 13 11 17 17 H 1.48496 * 109.46866 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47147 * 299.99993 * 15 13 11 19 19 C 1.38987 * 120.02552 * 180.02562 * 6 4 3 20 20 C 1.50706 * 109.46581 * 119.99784 * 2 1 3 21 21 O 1.20820 * 120.00196 * 25.00275 * 20 2 1 22 22 O 1.34228 * 119.99448 * 205.00073 * 20 2 1 23 23 C 1.50699 * 109.47186 * 239.99655 * 2 1 3 24 24 C 1.38233 * 119.99902 * 273.82182 * 23 2 1 25 25 C 1.38234 * 119.99607 * 180.02562 * 24 23 2 26 26 C 1.38237 * 120.00165 * 359.95491 * 25 24 23 27 27 C 1.38229 * 119.99711 * 0.28113 * 26 25 24 28 28 C 1.38230 * 119.99675 * 93.79851 * 23 2 1 29 29 H 1.08999 * 109.47632 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47212 * 300.00407 * 1 2 3 31 31 H 1.09001 * 109.47078 * 60.00011 * 1 2 3 32 32 H 0.96994 * 119.99659 * 242.17394 * 3 2 1 33 33 H 1.07999 * 119.82018 * 0.02562 * 7 6 4 34 34 H 1.08006 * 119.79130 * 180.23824 * 8 7 6 35 35 H 1.08008 * 119.97661 * 179.76501 * 9 8 7 36 36 H 0.96992 * 119.99799 * 180.02562 * 14 13 11 37 37 H 1.07993 * 120.20495 * 359.94754 * 19 6 4 38 38 H 0.96702 * 116.99813 * 180.02562 * 22 20 2 39 39 H 1.08000 * 120.00050 * 359.97438 * 24 23 2 40 40 H 1.08011 * 119.99914 * 179.97438 * 25 24 23 41 41 H 1.08000 * 119.99393 * 179.97438 * 26 25 24 42 42 H 1.08003 * 119.99848 * 179.72414 * 27 26 25 43 43 H 1.07994 * 120.00321 * 0.02562 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.7295 2.1981 1.0323 5 8 1.0634 1.7890 1.9632 6 6 2.2228 3.5923 1.0326 7 6 2.9946 4.0620 -0.0359 8 6 3.4560 5.3660 -0.0448 9 6 3.1695 6.2142 1.0020 10 6 2.3991 5.7580 2.0880 11 6 2.1036 6.6263 3.1647 12 1 2.7534 7.4622 3.3783 13 6 0.9693 6.4025 3.9530 14 7 0.0193 5.6124 3.5229 15 14 0.8116 7.2318 5.6194 16 1 0.8409 8.7060 5.4434 17 1 -0.4721 6.8336 6.2508 18 1 1.9407 6.8145 6.4888 19 6 1.9257 4.4350 2.0971 20 6 2.0323 -0.7104 1.2306 21 8 1.3395 -1.5362 1.7764 22 8 3.2492 -0.4257 1.7201 23 6 2.0324 -0.7105 -1.2304 24 6 2.1875 -2.0840 -1.2204 25 6 2.6488 -2.7356 -2.3489 26 6 2.9541 -2.0138 -3.4877 27 6 2.8035 -0.6397 -3.4959 28 6 2.3375 0.0114 -2.3691 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.5496 1.7077 -0.7429 33 1 3.2280 3.4039 -0.8598 34 1 4.0478 5.7201 -0.8760 35 1 3.5366 7.2299 0.9896 36 1 -0.7671 5.4576 4.0692 37 1 1.3339 4.0755 2.9259 38 1 3.5280 -0.9073 2.5109 39 1 1.9491 -2.6480 -0.3307 40 1 2.7705 -3.8088 -2.3411 41 1 3.3149 -2.5229 -4.3691 42 1 3.0462 -0.0752 -4.3841 43 1 2.2163 1.0845 -2.3768 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610847815.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:21 Heat of formation + Delta-G solvation = -94.335233 kcal Electronic energy + Delta-G solvation = -29102.290502 eV Core-core repulsion = 25076.306203 eV Total energy + Delta-G solvation = -4025.984300 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.130 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.42262 -40.63210 -40.05318 -38.84776 -37.36258 -36.66478 -35.60782 -33.34265 -31.96317 -31.56563 -31.26308 -30.29382 -27.26171 -26.62056 -24.89489 -23.72482 -23.27745 -22.81224 -21.51023 -20.97006 -19.76676 -19.39343 -18.60735 -18.18271 -17.49958 -16.93010 -16.74534 -16.45871 -16.35517 -15.98219 -15.67127 -15.62182 -15.27687 -15.02203 -14.68655 -14.49345 -14.35555 -14.25824 -13.97653 -13.61268 -13.47751 -13.30980 -13.17938 -12.92269 -12.80618 -12.68237 -12.54552 -12.40414 -12.21350 -12.06596 -11.89689 -11.73352 -11.51561 -11.07666 -10.83727 -10.50050 -9.92421 -9.82658 -9.49255 -9.37859 -8.65731 -6.38354 0.21193 0.34156 0.39570 0.94475 1.01857 1.35760 1.47206 1.49484 1.74819 1.98080 2.13325 2.18890 2.75687 2.79212 3.21215 3.65744 3.73320 3.88213 3.94162 4.02514 4.16449 4.25365 4.42623 4.46171 4.50581 4.55332 4.59686 4.63220 4.87758 4.91322 4.98682 5.04106 5.08682 5.12439 5.19363 5.31619 5.40041 5.45902 5.48597 5.51721 5.55148 5.84809 5.91852 5.98852 6.05820 6.27909 6.40493 6.62380 6.77366 6.88127 6.94695 7.15745 8.30088 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017532 B = 0.003165 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.736272 B = 8844.984668 C = 9846.570353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.236 3.764 3 N -0.700 5.700 4 C 0.571 3.429 5 O -0.575 6.575 6 C -0.137 4.137 7 C -0.195 4.195 8 C -0.094 4.094 9 C -0.214 4.214 10 C 0.067 3.933 11 C -0.497 4.497 12 H 0.084 0.916 13 C 0.029 3.971 14 N -0.826 5.826 15 Si 0.981 3.019 16 H -0.252 1.252 17 H -0.274 1.274 18 H -0.261 1.261 19 C -0.127 4.127 20 C 0.490 3.510 21 O -0.536 6.536 22 O -0.506 6.506 23 C -0.102 4.102 24 C -0.125 4.125 25 C -0.113 4.113 26 C -0.109 4.109 27 C -0.108 4.108 28 C -0.113 4.113 29 H 0.084 0.916 30 H 0.052 0.948 31 H 0.093 0.907 32 H 0.418 0.582 33 H 0.137 0.863 34 H 0.141 0.859 35 H 0.109 0.891 36 H 0.285 0.715 37 H 0.099 0.901 38 H 0.423 0.577 39 H 0.111 0.889 40 H 0.148 0.852 41 H 0.157 0.843 42 H 0.158 0.842 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.516 -13.261 -14.901 20.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.148 3.852 3 N -0.358 5.358 4 C 0.362 3.638 5 O -0.455 6.455 6 C -0.140 4.140 7 C -0.215 4.215 8 C -0.111 4.111 9 C -0.234 4.234 10 C 0.065 3.935 11 C -0.526 4.526 12 H 0.102 0.898 13 C -0.185 4.185 14 N -0.451 5.451 15 Si 0.801 3.199 16 H -0.175 1.175 17 H -0.199 1.199 18 H -0.186 1.186 19 C -0.147 4.147 20 C 0.331 3.669 21 O -0.425 6.425 22 O -0.319 6.319 23 C -0.103 4.103 24 C -0.143 4.143 25 C -0.131 4.131 26 C -0.126 4.126 27 C -0.126 4.126 28 C -0.131 4.131 29 H 0.103 0.897 30 H 0.071 0.929 31 H 0.111 0.889 32 H 0.260 0.740 33 H 0.154 0.846 34 H 0.159 0.841 35 H 0.127 0.873 36 H 0.096 0.904 37 H 0.117 0.883 38 H 0.284 0.716 39 H 0.129 0.871 40 H 0.165 0.835 41 H 0.175 0.825 42 H 0.175 0.825 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.510 -13.655 -14.392 20.590 hybrid contribution -0.204 0.212 1.732 1.757 sum 5.306 -13.443 -12.660 19.213 Atomic orbital electron populations 1.22107 0.90404 1.04162 1.03829 1.18893 0.95604 0.81464 0.89225 1.45886 1.56220 1.09621 1.24038 1.18777 0.77923 0.86101 0.81045 1.90699 1.40661 1.77099 1.37060 1.19645 1.03736 0.92008 0.98615 1.20852 1.04406 0.97335 0.98858 1.20927 0.99059 0.93246 0.97913 1.21433 1.07011 0.99628 0.95310 1.17931 0.91206 0.91553 0.92828 1.19842 1.08477 1.12042 1.12256 0.89768 1.26827 0.94059 0.94854 1.02809 1.69878 1.06354 1.30985 1.37915 0.85265 0.78354 0.79591 0.76646 1.17532 1.19863 1.18583 1.21445 1.01950 0.93396 0.97956 1.23741 0.78787 0.79302 0.85024 1.90655 1.57449 1.34642 1.59721 1.84529 1.33931 1.65790 1.47619 1.19266 1.03406 0.94432 0.93178 1.21075 1.00234 0.93070 0.99951 1.21408 0.98047 1.01338 0.92311 1.21660 0.97913 0.94334 0.98723 1.21521 0.97639 0.95170 0.98237 1.21107 0.98937 1.00679 0.92358 0.89688 0.92889 0.88865 0.74006 0.84562 0.84086 0.87268 0.90424 0.88327 0.71638 0.87105 0.83454 0.82544 0.82457 0.84535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.63 7.95 71.98 0.57 -4.06 16 2 C 0.24 7.18 0.86 2.11 0.00 7.18 16 3 N -0.70 -22.52 4.64 -432.55 -2.01 -24.53 16 4 C 0.57 24.73 7.04 86.80 0.61 25.34 16 5 O -0.57 -29.46 13.58 -3.88 -0.05 -29.51 16 6 C -0.14 -6.34 5.87 -20.13 -0.12 -6.46 16 7 C -0.19 -7.35 9.55 22.70 0.22 -7.13 16 8 C -0.09 -3.55 10.01 22.18 0.22 -3.33 16 9 C -0.21 -9.74 9.78 22.77 0.22 -9.52 16 10 C 0.07 3.60 5.57 -21.32 -0.12 3.48 16 11 C -0.50 -26.88 9.06 23.47 0.21 -26.67 16 12 H 0.08 4.28 7.90 -2.91 -0.02 4.26 16 13 C 0.03 1.53 5.17 85.25 0.44 1.97 16 14 N -0.83 -46.15 10.91 21.82 0.24 -45.91 16 15 Si 0.98 39.83 29.59 68.60 2.03 41.86 16 16 H -0.25 -9.56 7.11 99.48 0.71 -8.86 16 17 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 18 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 19 C -0.13 -6.97 8.23 23.01 0.19 -6.78 16 20 C 0.49 16.76 4.44 71.24 0.32 17.08 16 21 O -0.54 -20.31 16.27 21.98 0.36 -19.95 16 22 O -0.51 -15.61 12.96 -51.39 -0.67 -16.28 16 23 C -0.10 -2.38 4.81 -19.87 -0.10 -2.48 16 24 C -0.12 -2.68 9.15 22.27 0.20 -2.48 16 25 C -0.11 -1.72 10.05 22.27 0.22 -1.50 16 26 C -0.11 -1.30 10.05 22.27 0.22 -1.08 16 27 C -0.11 -1.41 10.05 22.27 0.22 -1.18 16 28 C -0.11 -2.03 9.03 22.27 0.20 -1.83 16 29 H 0.08 2.46 7.87 -2.39 -0.02 2.44 16 30 H 0.05 2.08 6.32 -2.39 -0.02 2.07 16 31 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.42 10.81 4.40 -92.71 -0.41 10.40 16 33 H 0.14 3.79 6.38 -2.91 -0.02 3.77 16 34 H 0.14 4.07 8.06 -2.91 -0.02 4.04 16 35 H 0.11 4.58 8.06 -2.91 -0.02 4.55 16 36 H 0.29 14.83 8.30 -92.71 -0.77 14.06 16 37 H 0.10 6.09 5.72 -2.91 -0.02 6.07 16 38 H 0.42 9.34 9.10 -74.06 -0.67 8.67 16 39 H 0.11 2.65 6.73 -2.91 -0.02 2.63 16 40 H 0.15 1.53 8.06 -2.90 -0.02 1.51 16 41 H 0.16 0.91 8.06 -2.91 -0.02 0.88 16 42 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 43 H 0.14 2.17 6.44 -2.91 -0.02 2.15 16 Total: -1.00 -74.99 363.50 3.65 -71.34 By element: Atomic # 1 Polarization: 42.42 SS G_CDS: 0.00 Total: 42.42 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: 3.75 Total: -19.44 kcal Atomic # 7 Polarization: -68.67 SS G_CDS: -1.77 Total: -70.44 kcal Atomic # 8 Polarization: -65.38 SS G_CDS: -0.36 Total: -65.74 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.86 kcal Total: -74.99 3.65 -71.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610847815.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.996 kcal (2) G-P(sol) polarization free energy of solvation -74.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds