Wall clock time and date at job start Sat Apr 11 2020 05:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42892 * 113.99906 * 2 1 4 4 H 1.09005 * 112.91104 * 338.24709 * 3 2 1 5 5 C 1.53775 * 113.61633 * 109.50535 * 3 2 1 6 6 C 1.53776 * 87.08549 * 89.11628 * 5 3 2 7 7 H 1.09005 * 113.61360 * 270.80129 * 6 5 3 8 8 N 1.46495 * 113.61850 * 139.98338 * 6 5 3 9 9 S 1.65604 * 120.00141 * 115.86559 * 8 6 5 10 10 O 1.42105 * 106.39954 * 311.45845 * 9 8 6 11 11 O 1.42096 * 106.40368 * 178.54000 * 9 8 6 12 12 C 1.76196 * 107.22013 * 64.99719 * 9 8 6 13 13 C 1.38659 * 119.87900 * 270.02491 * 12 9 8 14 14 C 1.38606 * 120.50428 * 179.97438 * 13 12 9 15 15 C 1.37643 * 120.24615 * 0.02562 * 14 13 12 16 16 C 1.40693 * 119.74454 * 359.74386 * 15 14 13 17 17 C 1.41400 * 120.24436 * 180.28046 * 16 15 14 18 18 H 1.07996 * 120.00100 * 204.52217 * 17 16 15 19 19 C 1.39947 * 119.99769 * 24.51916 * 17 16 15 20 20 N 1.30815 * 120.00517 * 17.72741 * 19 17 16 21 21 Si 1.86808 * 119.99688 * 197.73010 * 19 17 16 22 22 H 1.48492 * 109.47232 * 89.99941 * 21 19 17 23 23 H 1.48503 * 109.46764 * 210.00066 * 21 19 17 24 24 H 1.48496 * 109.46966 * 329.99863 * 21 19 17 25 25 C 1.37597 * 119.87569 * 89.99926 * 12 9 8 26 26 C 1.53778 * 87.17273 * 25.39148 * 6 5 3 27 27 C 1.52998 * 113.61761 * 89.16029 * 26 6 5 28 28 C 1.53004 * 113.61495 * 220.06579 * 26 6 5 29 29 H 1.08998 * 109.47418 * 299.99891 * 1 2 3 30 30 H 1.09006 * 109.47149 * 60.00417 * 1 2 3 31 31 H 1.09007 * 109.47269 * 179.97438 * 1 2 3 32 32 H 1.08998 * 113.61415 * 334.56180 * 5 3 2 33 33 H 1.09001 * 113.69161 * 203.67396 * 5 3 2 34 34 H 0.96999 * 120.00107 * 295.85952 * 8 6 5 35 35 H 1.07999 * 119.74711 * 359.97438 * 13 12 9 36 36 H 1.08003 * 119.87733 * 179.97438 * 14 13 12 37 37 H 1.07999 * 120.12435 * 179.97438 * 15 14 13 38 38 H 0.96995 * 120.00754 * 179.97438 * 20 19 17 39 39 H 1.08002 * 120.12881 * 0.02562 * 25 12 9 40 40 H 1.09002 * 109.46891 * 59.99952 * 27 26 6 41 41 H 1.08994 * 109.47513 * 179.97438 * 27 26 6 42 42 H 1.09004 * 109.46924 * 300.00502 * 27 26 6 43 43 H 1.09003 * 109.47366 * 60.00026 * 28 26 6 44 44 H 1.09008 * 109.46951 * 179.97438 * 28 26 6 45 45 H 1.08999 * 109.47097 * 299.99633 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3308 2.0724 -0.3721 5 6 2.6905 1.6768 1.3281 6 6 3.9723 1.0481 0.7568 7 1 4.0661 -0.0177 0.9650 8 7 5.1881 1.7996 1.0779 9 16 6.3597 1.1131 2.0259 10 8 5.6936 0.5737 3.1594 11 8 7.4083 2.0672 2.1219 12 6 7.0148 -0.2583 1.1346 13 6 6.4465 -1.5142 1.2838 14 6 6.9511 -2.6019 0.5885 15 6 8.0244 -2.4458 -0.2589 16 6 8.6060 -1.1752 -0.4219 17 6 9.7053 -1.0016 -1.2942 18 1 10.3906 -0.1808 -1.1427 19 6 9.9053 -1.8937 -2.3538 20 7 8.9255 -2.6613 -2.7565 21 14 11.5715 -1.9883 -3.1932 22 1 12.4140 -3.0012 -2.5083 23 1 11.3881 -2.3763 -4.6149 24 1 12.2367 -0.6625 -3.1238 25 6 8.0881 -0.0789 0.2925 26 6 3.4092 1.3556 -0.6408 27 6 3.7937 2.7404 -1.1655 28 6 3.6580 0.2422 -1.6603 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 2.2884 1.1428 2.1890 33 1 2.7681 2.7512 1.4950 34 1 5.3070 2.6992 0.7352 35 1 5.6043 -1.6459 1.9469 36 1 6.5008 -3.5758 0.7127 37 1 8.4163 -3.2948 -0.7994 38 1 9.0640 -3.2793 -3.4912 39 1 8.5293 0.9002 0.1776 40 1 4.8792 2.8166 -1.2282 41 1 3.3618 2.8866 -2.1555 42 1 3.4144 3.5043 -0.4867 43 1 3.1871 -0.6784 -1.3153 44 1 3.2328 0.5288 -2.6223 45 1 4.7307 0.0828 -1.7698 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619489970.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:28 Heat of formation + Delta-G solvation = -106.176905 kcal Electronic energy + Delta-G solvation = -28457.878375 eV Core-core repulsion = 24566.824533 eV Total energy + Delta-G solvation = -3891.053842 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.32411 -39.44580 -38.24873 -37.54932 -36.90485 -35.67082 -33.98639 -31.91792 -31.59309 -31.33881 -28.44844 -27.40463 -27.32510 -24.96562 -23.68105 -23.33795 -22.80547 -20.66173 -19.88798 -19.64113 -18.39716 -17.94029 -17.71889 -16.89049 -16.64444 -16.53334 -16.35632 -16.16154 -15.61784 -15.22681 -15.11336 -15.06974 -14.55112 -14.31676 -13.92223 -13.72861 -13.45940 -13.31604 -13.26602 -13.20197 -13.08036 -13.05215 -13.03790 -12.83147 -12.78945 -12.69791 -12.59507 -12.33629 -12.22286 -11.89341 -11.75673 -11.54660 -11.30234 -11.15090 -10.97449 -10.32972 -10.23742 -9.83922 -9.56065 -8.72983 -6.45111 -0.47626 0.41060 0.84378 1.36978 1.46096 1.49913 2.13323 2.17365 2.55068 2.75008 2.78486 3.45366 3.47290 3.54845 3.59586 3.84652 3.98253 4.18490 4.30847 4.31715 4.42583 4.44928 4.58532 4.65535 4.66798 4.79520 4.83021 4.83508 4.90118 4.94250 4.99524 5.05405 5.07682 5.13789 5.18660 5.19963 5.27198 5.41285 5.46092 5.55276 5.56556 5.88745 5.93725 6.09474 6.13833 6.39061 6.52511 6.79831 6.84758 8.24870 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012869 B = 0.003877 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.289548 B = 7220.054266 C = 8056.742798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.390 6.390 3 C 0.080 3.920 4 H 0.107 0.893 5 C -0.163 4.163 6 C 0.129 3.871 7 H 0.097 0.903 8 N -1.089 6.089 9 S 2.714 3.286 10 O -0.986 6.986 11 O -0.996 6.996 12 C -0.636 4.636 13 C -0.148 4.148 14 C -0.121 4.121 15 C -0.140 4.140 16 C 0.065 3.935 17 C -0.498 4.498 18 H 0.078 0.922 19 C 0.040 3.960 20 N -0.820 5.820 21 Si 0.982 3.018 22 H -0.262 1.262 23 H -0.265 1.265 24 H -0.259 1.259 25 C -0.143 4.143 26 C -0.086 4.086 27 C -0.133 4.133 28 C -0.132 4.132 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.118 0.882 34 H 0.426 0.574 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.113 0.887 38 H 0.292 0.708 39 H 0.110 0.890 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.383 7.581 0.053 17.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.309 6.309 3 C 0.021 3.979 4 H 0.125 0.875 5 C -0.203 4.203 6 C 0.022 3.978 7 H 0.115 0.885 8 N -0.851 5.851 9 S 2.807 3.193 10 O -0.976 6.976 11 O -0.987 6.987 12 C -0.725 4.725 13 C -0.169 4.169 14 C -0.141 4.141 15 C -0.160 4.160 16 C 0.062 3.938 17 C -0.527 4.527 18 H 0.096 0.904 19 C -0.176 4.176 20 N -0.446 5.446 21 Si 0.802 3.198 22 H -0.187 1.187 23 H -0.189 1.189 24 H -0.183 1.183 25 C -0.164 4.164 26 C -0.088 4.088 27 C -0.190 4.190 28 C -0.190 4.190 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.136 0.864 34 H 0.265 0.735 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.131 0.869 38 H 0.102 0.898 39 H 0.128 0.872 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -15.104 7.358 0.788 16.819 hybrid contribution 0.952 -0.504 -1.155 1.579 sum -14.152 6.854 -0.367 15.729 Atomic orbital electron populations 1.22980 0.79467 1.03601 1.01018 1.87884 1.21371 1.27083 1.94529 1.23081 0.93719 0.85617 0.95508 0.87489 1.23990 0.94860 1.03023 0.98401 1.22542 0.82771 0.95620 0.96908 0.88548 1.55215 1.31573 1.27141 1.71132 1.00925 0.72189 0.72820 0.73410 1.93501 1.75155 1.80561 1.48397 1.93496 1.56818 1.61529 1.86808 1.30225 1.09821 1.15806 1.16614 1.20397 1.01909 0.91859 1.02731 1.21106 0.97205 0.98541 0.97200 1.21614 0.98000 0.97339 0.99000 1.18014 0.92648 0.91543 0.91594 1.19857 1.09791 1.12417 1.10666 0.90383 1.26711 1.01518 0.92896 0.96482 1.69810 1.33124 1.18558 1.23062 0.85200 0.77106 0.79912 0.77542 1.18691 1.18938 1.18304 1.20827 0.97050 0.98172 1.00349 1.22557 0.94805 0.97621 0.93812 1.21627 1.02067 0.93098 1.02222 1.21565 1.00297 0.98435 0.98687 0.92926 0.92719 0.89136 0.90521 0.86372 0.73534 0.85642 0.85830 0.86935 0.89754 0.87235 0.92204 0.90610 0.89759 0.92389 0.91569 0.94862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.86 113.37 1.23 1.60 16 2 O -0.39 -8.61 9.17 -148.98 -1.37 -9.98 16 3 C 0.08 1.51 3.78 31.18 0.12 1.62 16 4 H 0.11 1.41 7.86 -2.38 -0.02 1.39 16 5 C -0.16 -3.31 7.36 31.12 0.23 -3.08 16 6 C 0.13 3.46 3.73 45.52 0.17 3.63 16 7 H 0.10 3.04 7.70 -2.38 -0.02 3.02 16 8 N -1.09 -30.94 5.57 -167.21 -0.93 -31.87 16 9 S 2.71 102.39 5.68 -56.49 -0.32 102.07 16 10 O -0.99 -40.04 17.03 -128.00 -2.18 -42.22 16 11 O -1.00 -42.03 17.26 -128.00 -2.21 -44.23 16 12 C -0.64 -28.38 5.94 22.22 0.13 -28.25 16 13 C -0.15 -6.52 9.22 22.46 0.21 -6.31 16 14 C -0.12 -5.56 10.02 22.22 0.22 -5.34 16 15 C -0.14 -7.22 8.70 22.73 0.20 -7.02 16 16 C 0.07 3.51 5.57 -21.29 -0.12 3.39 16 17 C -0.50 -26.62 9.06 23.46 0.21 -26.41 16 18 H 0.08 4.06 7.91 -2.91 -0.02 4.04 16 19 C 0.04 1.95 5.14 85.26 0.44 2.39 16 20 N -0.82 -41.37 10.95 21.83 0.24 -41.13 16 21 Si 0.98 37.40 29.60 68.60 2.03 39.43 16 22 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 23 H -0.27 -9.49 7.11 99.48 0.71 -8.79 16 24 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 25 C -0.14 -7.14 9.26 22.73 0.21 -6.93 16 26 C -0.09 -1.95 1.35 -51.59 -0.07 -2.02 16 27 C -0.13 -2.35 8.01 71.98 0.58 -1.78 16 28 C -0.13 -3.68 9.05 71.98 0.65 -3.03 16 29 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.12 1.81 7.67 -2.39 -0.02 1.79 16 34 H 0.43 9.76 7.08 -96.75 -0.69 9.07 16 35 H 0.13 4.94 7.60 -2.91 -0.02 4.92 16 36 H 0.12 4.87 8.06 -2.91 -0.02 4.85 16 37 H 0.11 5.96 6.16 -2.91 -0.02 5.95 16 38 H 0.29 13.22 8.30 -92.71 -0.77 12.45 16 39 H 0.11 5.32 7.60 -2.91 -0.02 5.29 16 40 H 0.06 1.21 7.27 -2.39 -0.02 1.19 16 41 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.08 1.07 7.35 -2.39 -0.02 1.05 16 43 H 0.06 1.72 6.96 -2.39 -0.02 1.70 16 44 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 45 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -67.76 378.14 -0.01 -67.77 By element: Atomic # 1 Polarization: 37.36 SS G_CDS: 0.31 Total: 37.68 kcal Atomic # 6 Polarization: -81.94 SS G_CDS: 4.41 Total: -77.53 kcal Atomic # 7 Polarization: -72.31 SS G_CDS: -0.69 Total: -73.00 kcal Atomic # 8 Polarization: -90.68 SS G_CDS: -5.75 Total: -96.43 kcal Atomic # 14 Polarization: 37.40 SS G_CDS: 2.03 Total: 39.43 kcal Atomic # 16 Polarization: 102.39 SS G_CDS: -0.32 Total: 102.07 kcal Total: -67.76 -0.01 -67.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619489970.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.402 kcal (2) G-P(sol) polarization free energy of solvation -67.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds