Wall clock time and date at job start Sat Apr 11 2020 05:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00150 * 2 1 4 4 H 1.08996 * 112.85022 * 339.66208 * 3 2 1 5 5 C 1.53778 * 113.61449 * 110.86418 * 3 2 1 6 6 C 1.53776 * 87.08205 * 139.97907 * 5 3 2 7 7 H 1.09004 * 113.61955 * 89.19840 * 6 5 3 8 8 N 1.46502 * 113.61721 * 220.01717 * 6 5 3 9 9 S 1.65598 * 119.99972 * 245.49394 * 8 6 5 10 10 O 1.42105 * 106.40294 * 178.53397 * 9 8 6 11 11 O 1.42097 * 106.40355 * 311.45709 * 9 8 6 12 12 C 1.76203 * 107.21682 * 64.99792 * 9 8 6 13 13 C 1.38657 * 119.87606 * 90.00178 * 12 9 8 14 14 C 1.38614 * 120.50048 * 179.97438 * 13 12 9 15 15 C 1.37639 * 120.24882 * 359.97438 * 14 13 12 16 16 C 1.40693 * 119.74363 * 0.02562 * 15 14 13 17 17 C 1.41399 * 120.24371 * 179.97438 * 16 15 14 18 18 H 1.07996 * 119.99975 * 155.23413 * 17 16 15 19 19 C 1.39944 * 120.00139 * 335.24768 * 17 16 15 20 20 N 1.30831 * 119.99869 * 342.27389 * 19 17 16 21 21 Si 1.86797 * 120.00270 * 162.28304 * 19 17 16 22 22 H 1.48495 * 109.47453 * 89.99018 * 21 19 17 23 23 H 1.48504 * 109.47013 * 209.99682 * 21 19 17 24 24 H 1.48505 * 109.46994 * 329.99157 * 21 19 17 25 25 C 1.37595 * 119.87296 * 269.72080 * 12 9 8 26 26 C 1.53786 * 113.61170 * 208.46899 * 3 2 1 27 27 C 1.53002 * 113.61526 * 334.56422 * 26 3 2 28 28 C 1.52996 * 113.61456 * 105.46541 * 26 3 2 29 29 H 1.09001 * 109.47171 * 300.00252 * 1 2 3 30 30 H 1.08995 * 109.46977 * 60.00189 * 1 2 3 31 31 H 1.09000 * 109.47597 * 180.02562 * 1 2 3 32 32 H 1.09006 * 113.61233 * 254.52603 * 5 3 2 33 33 H 1.08995 * 113.62081 * 25.42813 * 5 3 2 34 34 H 0.96998 * 119.99691 * 65.48843 * 8 6 5 35 35 H 1.07997 * 119.74708 * 359.97438 * 13 12 9 36 36 H 1.08005 * 119.87704 * 179.97438 * 14 13 12 37 37 H 1.07999 * 120.12415 * 180.02562 * 15 14 13 38 38 H 0.96993 * 119.99705 * 180.02562 * 20 19 17 39 39 H 1.07995 * 120.13372 * 0.02562 * 25 12 9 40 40 H 1.09008 * 109.46781 * 79.50442 * 27 26 3 41 41 H 1.08990 * 109.47349 * 199.50170 * 27 26 3 42 42 H 1.09003 * 109.47096 * 319.50969 * 27 26 3 43 43 H 1.09007 * 109.46913 * 40.49917 * 28 26 3 44 44 H 1.08995 * 109.47097 * 160.49164 * 28 26 3 45 45 H 1.08998 * 109.47610 * 280.49789 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3220 2.0752 -0.3491 5 6 2.7192 1.6641 1.3166 6 6 3.8112 2.3231 0.4576 7 1 3.6172 3.3722 0.2341 8 7 5.1695 2.0891 0.9542 9 16 6.0773 3.3571 1.5114 10 8 7.3123 2.8055 1.9471 11 8 5.9862 4.3786 0.5279 12 6 5.2750 3.9797 2.9514 13 6 5.5984 3.4671 4.1984 14 6 4.9757 3.9478 5.3397 15 6 4.0281 4.9416 5.2462 16 6 3.6919 5.4693 3.9861 17 6 2.7195 6.4901 3.8777 18 1 2.7340 7.1621 3.0325 19 6 1.7384 6.6296 4.8659 20 7 1.4940 5.6425 5.6890 21 14 0.7778 8.2252 5.0095 22 1 -0.4393 8.1483 4.1623 23 1 0.3830 8.4395 6.4250 24 1 1.6262 9.3564 4.5556 25 6 4.3341 4.9769 2.8345 26 6 3.3924 1.3643 -0.6717 27 6 4.1408 0.0300 -0.6518 28 6 3.3740 2.0161 -2.0557 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 2.1634 2.3703 1.9335 33 1 3.0680 0.7957 1.8754 34 1 5.5371 1.1915 0.9565 35 1 6.3411 2.6875 4.2811 36 1 5.2351 3.5410 6.3060 37 1 3.5445 5.3149 6.1368 38 1 0.8137 5.7391 6.3736 39 1 4.0866 5.3776 1.8627 40 1 3.7554 -0.6146 -1.4419 41 1 5.2039 0.2072 -0.8139 42 1 3.9961 -0.4534 0.3144 43 1 2.7092 2.8800 -2.0416 44 1 4.3815 2.3374 -2.3194 45 1 3.0179 1.2957 -2.7921 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619489971.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:31 Heat of formation + Delta-G solvation = -89.370140 kcal Electronic energy + Delta-G solvation = -28380.988567 eV Core-core repulsion = 24490.663521 eV Total energy + Delta-G solvation = -3890.325046 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.28854 -37.64834 -36.76890 -36.54912 -35.29180 -33.86236 -32.83534 -30.43401 -30.08796 -29.78954 -27.59443 -26.74547 -25.49836 -23.64010 -22.42974 -21.88962 -21.00941 -19.18147 -18.83627 -17.98067 -16.94745 -16.88784 -15.93740 -15.58894 -15.42143 -15.26950 -15.00791 -14.71404 -14.34455 -14.19761 -13.59379 -13.41445 -13.35091 -13.19489 -12.59745 -12.39952 -12.22283 -12.07896 -11.94034 -11.91114 -11.63168 -11.60380 -11.51442 -11.44524 -11.39012 -11.36214 -11.01294 -11.00143 -10.90195 -10.66173 -10.63400 -10.36208 -9.78989 -9.61547 -9.36559 -9.34561 -9.02227 -8.04562 -7.71398 -6.94897 -4.55459 1.03987 2.19131 2.61912 2.98070 2.99860 3.06927 3.49142 3.80674 3.86248 4.24308 4.34477 4.43573 4.51289 4.78680 4.87506 5.05351 5.17646 5.19588 5.30714 5.37364 5.38939 5.44433 5.57813 5.65003 5.66991 5.77476 5.85333 5.97694 6.02155 6.04616 6.16791 6.17753 6.26472 6.36152 6.50562 6.63432 6.74466 6.84134 7.01622 7.17954 7.20743 7.26157 7.37365 7.72005 7.79030 7.92612 8.38455 8.65317 8.70213 10.00573 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009966 B = 0.004455 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.781418 B = 6283.766652 C = 7888.833870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.372 6.372 3 C 0.069 3.931 4 H 0.090 0.910 5 C -0.168 4.168 6 C 0.142 3.858 7 H 0.120 0.880 8 N -1.104 6.104 9 S 2.686 3.314 10 O -0.977 6.977 11 O -0.972 6.972 12 C -0.629 4.629 13 C -0.144 4.144 14 C -0.121 4.121 15 C -0.117 4.117 16 C 0.093 3.907 17 C -0.461 4.461 18 H 0.082 0.918 19 C 0.076 3.924 20 N -0.794 5.794 21 Si 0.909 3.091 22 H -0.269 1.269 23 H -0.275 1.275 24 H -0.259 1.259 25 C -0.127 4.127 26 C -0.084 4.084 27 C -0.121 4.121 28 C -0.140 4.140 29 H 0.043 0.957 30 H 0.039 0.961 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.413 0.587 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.124 0.876 38 H 0.283 0.717 39 H 0.110 0.890 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.566 -8.777 -8.848 12.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.290 6.290 3 C 0.011 3.989 4 H 0.108 0.892 5 C -0.208 4.208 6 C 0.034 3.966 7 H 0.138 0.862 8 N -0.860 5.860 9 S 2.782 3.218 10 O -0.968 6.968 11 O -0.962 6.962 12 C -0.721 4.721 13 C -0.165 4.165 14 C -0.141 4.141 15 C -0.137 4.137 16 C 0.090 3.910 17 C -0.490 4.490 18 H 0.100 0.900 19 C -0.142 4.142 20 N -0.420 5.420 21 Si 0.733 3.267 22 H -0.194 1.194 23 H -0.200 1.200 24 H -0.183 1.183 25 C -0.148 4.148 26 C -0.087 4.087 27 C -0.178 4.178 28 C -0.197 4.197 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.248 0.752 35 H 0.123 0.877 36 H 0.116 0.884 37 H 0.142 0.858 38 H 0.094 0.906 39 H 0.128 0.872 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.883 -8.524 -9.071 12.589 hybrid contribution -1.256 0.538 0.895 1.633 sum -3.139 -7.986 -8.176 11.852 Atomic orbital electron populations 1.22769 0.81534 1.02391 1.00037 1.87909 1.19226 1.27235 1.94609 1.23714 0.93227 0.85188 0.96810 0.89174 1.23984 0.97559 1.01871 0.97362 1.22070 0.80629 0.99754 0.94173 0.86201 1.55478 1.26370 1.24762 1.79433 1.01728 0.72962 0.72738 0.74363 1.93521 1.41314 1.78819 1.83137 1.93526 1.86642 1.56932 1.59114 1.29719 1.15322 1.11927 1.15122 1.20072 1.02368 1.02556 0.91554 1.20811 0.97982 0.98672 0.96589 1.21625 0.96359 0.97328 0.98372 1.17660 0.91182 0.91543 0.90663 1.19591 1.09542 1.12915 1.06989 0.89978 1.25916 0.96761 0.97353 0.94161 1.69781 1.27068 1.30261 1.14854 0.86290 0.79822 0.82187 0.78403 1.19368 1.20007 1.18290 1.20748 0.98546 0.97159 0.98346 1.22543 0.94623 0.96559 0.94931 1.21362 0.99061 0.94595 1.02776 1.21777 1.02556 1.00206 0.95151 0.93867 0.94220 0.90006 0.89752 0.88581 0.75174 0.87653 0.88437 0.85842 0.90615 0.87180 0.92001 0.92376 0.91737 0.92223 0.91771 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.85 101.05 1.10 1.38 16 2 O -0.37 -4.50 9.86 -35.23 -0.35 -4.85 16 3 C 0.07 0.83 3.72 -25.92 -0.10 0.73 16 4 H 0.09 0.99 7.75 -51.93 -0.40 0.59 16 5 C -0.17 -2.33 7.36 -25.92 -0.19 -2.52 16 6 C 0.14 1.97 3.88 -67.03 -0.26 1.71 16 7 H 0.12 1.74 7.71 -51.93 -0.40 1.34 16 8 N -1.10 -16.10 5.62 -4.12 -0.02 -16.12 16 9 S 2.69 49.97 5.71 -107.50 -0.61 49.35 16 10 O -0.98 -19.92 17.27 -57.17 -0.99 -20.91 16 11 O -0.97 -20.07 16.76 -57.17 -0.96 -21.03 16 12 C -0.63 -13.47 5.94 -39.66 -0.24 -13.71 16 13 C -0.14 -3.12 9.53 -39.29 -0.37 -3.49 16 14 C -0.12 -2.70 10.02 -39.66 -0.40 -3.09 16 15 C -0.12 -2.87 8.70 -38.87 -0.34 -3.20 16 16 C 0.09 2.34 5.57 -106.82 -0.60 1.74 16 17 C -0.46 -11.50 9.05 -37.74 -0.34 -11.85 16 18 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 19 C 0.08 1.79 5.14 -17.34 -0.09 1.70 16 20 N -0.79 -19.18 10.97 55.55 0.61 -18.57 16 21 Si 0.91 17.67 29.59 -169.99 -5.03 12.64 16 22 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 23 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 24 H -0.26 -5.06 7.11 56.52 0.40 -4.65 16 25 C -0.13 -2.94 9.26 -38.87 -0.36 -3.30 16 26 C -0.08 -0.99 1.35 -153.60 -0.21 -1.19 16 27 C -0.12 -1.30 7.25 37.16 0.27 -1.03 16 28 C -0.14 -1.48 9.17 37.16 0.34 -1.13 16 29 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 33 H 0.10 1.33 7.64 -51.93 -0.40 0.93 16 34 H 0.41 5.11 7.12 -34.47 -0.25 4.86 16 35 H 0.11 2.08 7.60 -52.49 -0.40 1.68 16 36 H 0.10 1.91 8.06 -52.48 -0.42 1.48 16 37 H 0.12 3.08 6.18 -52.49 -0.32 2.76 16 38 H 0.28 6.22 8.30 -40.82 -0.34 5.88 16 39 H 0.11 2.43 7.60 -52.49 -0.40 2.03 16 40 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 41 H 0.06 0.58 7.44 -51.93 -0.39 0.19 16 42 H 0.06 0.71 7.26 -51.93 -0.38 0.34 16 43 H 0.06 0.60 8.01 -51.92 -0.42 0.18 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 379.45 15.07 5.72 5.72 Total: -1.00 -29.73 379.45 -10.09 -39.82 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -6.68 Total: 11.19 kcal Atomic # 6 Polarization: -35.47 SS G_CDS: -1.78 Total: -37.25 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.59 Total: -34.69 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -2.29 Total: -46.78 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.03 Total: 12.64 kcal Atomic # 16 Polarization: 49.97 SS G_CDS: -0.61 Total: 49.35 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.73 -10.09 -39.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619489971.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.547 kcal (2) G-P(sol) polarization free energy of solvation -29.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds