Wall clock time and date at job start Sat Apr 11 2020 05:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00150 * 2 1 4 4 H 1.08996 * 112.85022 * 339.66208 * 3 2 1 5 5 C 1.53778 * 113.61449 * 110.86418 * 3 2 1 6 6 C 1.53776 * 87.08205 * 139.97907 * 5 3 2 7 7 H 1.09004 * 113.61955 * 89.19840 * 6 5 3 8 8 N 1.46502 * 113.61721 * 220.01717 * 6 5 3 9 9 S 1.65598 * 119.99972 * 245.49394 * 8 6 5 10 10 O 1.42105 * 106.40294 * 178.53397 * 9 8 6 11 11 O 1.42097 * 106.40355 * 311.45709 * 9 8 6 12 12 C 1.76203 * 107.21682 * 64.99792 * 9 8 6 13 13 C 1.38657 * 119.87606 * 90.00178 * 12 9 8 14 14 C 1.38614 * 120.50048 * 179.97438 * 13 12 9 15 15 C 1.37639 * 120.24882 * 359.97438 * 14 13 12 16 16 C 1.40693 * 119.74363 * 0.02562 * 15 14 13 17 17 C 1.41399 * 120.24371 * 179.97438 * 16 15 14 18 18 H 1.07996 * 119.99975 * 155.23413 * 17 16 15 19 19 C 1.39944 * 120.00139 * 335.24768 * 17 16 15 20 20 N 1.30831 * 119.99869 * 342.27389 * 19 17 16 21 21 Si 1.86797 * 120.00270 * 162.28304 * 19 17 16 22 22 H 1.48495 * 109.47453 * 89.99018 * 21 19 17 23 23 H 1.48504 * 109.47013 * 209.99682 * 21 19 17 24 24 H 1.48505 * 109.46994 * 329.99157 * 21 19 17 25 25 C 1.37595 * 119.87296 * 269.72080 * 12 9 8 26 26 C 1.53786 * 113.61170 * 208.46899 * 3 2 1 27 27 C 1.53002 * 113.61526 * 334.56422 * 26 3 2 28 28 C 1.52996 * 113.61456 * 105.46541 * 26 3 2 29 29 H 1.09001 * 109.47171 * 300.00252 * 1 2 3 30 30 H 1.08995 * 109.46977 * 60.00189 * 1 2 3 31 31 H 1.09000 * 109.47597 * 180.02562 * 1 2 3 32 32 H 1.09006 * 113.61233 * 254.52603 * 5 3 2 33 33 H 1.08995 * 113.62081 * 25.42813 * 5 3 2 34 34 H 0.96998 * 119.99691 * 65.48843 * 8 6 5 35 35 H 1.07997 * 119.74708 * 359.97438 * 13 12 9 36 36 H 1.08005 * 119.87704 * 179.97438 * 14 13 12 37 37 H 1.07999 * 120.12415 * 180.02562 * 15 14 13 38 38 H 0.96993 * 119.99705 * 180.02562 * 20 19 17 39 39 H 1.07995 * 120.13372 * 0.02562 * 25 12 9 40 40 H 1.09008 * 109.46781 * 79.50442 * 27 26 3 41 41 H 1.08990 * 109.47349 * 199.50170 * 27 26 3 42 42 H 1.09003 * 109.47096 * 319.50969 * 27 26 3 43 43 H 1.09007 * 109.46913 * 40.49917 * 28 26 3 44 44 H 1.08995 * 109.47097 * 160.49164 * 28 26 3 45 45 H 1.08998 * 109.47610 * 280.49789 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3220 2.0752 -0.3491 5 6 2.7192 1.6641 1.3166 6 6 3.8112 2.3231 0.4576 7 1 3.6172 3.3722 0.2341 8 7 5.1695 2.0891 0.9542 9 16 6.0773 3.3571 1.5114 10 8 7.3123 2.8055 1.9471 11 8 5.9862 4.3786 0.5279 12 6 5.2750 3.9797 2.9514 13 6 5.5984 3.4671 4.1984 14 6 4.9757 3.9478 5.3397 15 6 4.0281 4.9416 5.2462 16 6 3.6919 5.4693 3.9861 17 6 2.7195 6.4901 3.8777 18 1 2.7340 7.1621 3.0325 19 6 1.7384 6.6296 4.8659 20 7 1.4940 5.6425 5.6890 21 14 0.7778 8.2252 5.0095 22 1 -0.4393 8.1483 4.1623 23 1 0.3830 8.4395 6.4250 24 1 1.6262 9.3564 4.5556 25 6 4.3341 4.9769 2.8345 26 6 3.3924 1.3643 -0.6717 27 6 4.1408 0.0300 -0.6518 28 6 3.3740 2.0161 -2.0557 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 2.1634 2.3703 1.9335 33 1 3.0680 0.7957 1.8754 34 1 5.5371 1.1915 0.9565 35 1 6.3411 2.6875 4.2811 36 1 5.2351 3.5410 6.3060 37 1 3.5445 5.3149 6.1368 38 1 0.8137 5.7391 6.3736 39 1 4.0866 5.3776 1.8627 40 1 3.7554 -0.6146 -1.4419 41 1 5.2039 0.2072 -0.8139 42 1 3.9961 -0.4534 0.3144 43 1 2.7092 2.8800 -2.0416 44 1 4.3815 2.3374 -2.3194 45 1 3.0179 1.2957 -2.7921 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619489971.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:30 Heat of formation + Delta-G solvation = -108.130190 kcal Electronic energy + Delta-G solvation = -28381.802064 eV Core-core repulsion = 24490.663521 eV Total energy + Delta-G solvation = -3891.138543 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.30224 -39.43391 -38.26161 -37.60683 -36.91026 -35.65831 -34.02185 -31.90483 -31.61448 -31.36139 -28.43441 -27.56085 -27.32950 -24.71027 -23.66439 -23.43227 -22.79630 -20.67628 -19.93148 -19.63341 -18.42235 -17.91429 -17.68256 -16.99013 -16.70289 -16.49566 -16.29296 -16.22427 -15.58315 -15.24453 -15.19790 -15.05220 -14.43494 -14.29648 -14.09323 -13.72643 -13.50281 -13.32477 -13.22120 -13.14091 -13.07335 -13.03455 -13.00699 -12.87902 -12.79989 -12.68858 -12.59791 -12.30171 -12.21949 -11.94481 -11.62511 -11.55415 -11.39150 -11.29103 -11.12983 -10.30086 -10.26391 -9.83333 -9.54564 -8.72522 -6.43714 -0.49414 0.41823 0.85566 1.37717 1.44497 1.52286 2.09539 2.17569 2.56049 2.77757 2.92678 3.32212 3.47539 3.53751 3.55165 3.81638 3.85068 4.17234 4.30790 4.31613 4.41687 4.45620 4.52160 4.60257 4.64622 4.71834 4.84530 4.87287 4.90070 4.90682 5.01127 5.03481 5.07872 5.11937 5.16709 5.21097 5.27537 5.41830 5.44129 5.53694 5.57495 5.89951 5.94754 6.08132 6.11837 6.32779 6.53556 6.81072 6.85818 8.25254 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009966 B = 0.004455 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.781418 B = 6283.766652 C = 7888.833870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.383 6.383 3 C 0.076 3.924 4 H 0.100 0.900 5 C -0.172 4.172 6 C 0.130 3.870 7 H 0.111 0.889 8 N -1.087 6.087 9 S 2.716 3.284 10 O -0.990 6.990 11 O -0.990 6.990 12 C -0.635 4.635 13 C -0.149 4.149 14 C -0.124 4.124 15 C -0.141 4.141 16 C 0.066 3.934 17 C -0.495 4.495 18 H 0.079 0.921 19 C 0.040 3.960 20 N -0.821 5.821 21 Si 0.979 3.021 22 H -0.260 1.260 23 H -0.266 1.266 24 H -0.261 1.261 25 C -0.140 4.140 26 C -0.074 4.074 27 C -0.122 4.122 28 C -0.140 4.140 29 H 0.037 0.963 30 H 0.053 0.947 31 H 0.098 0.902 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.427 0.573 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.291 0.709 39 H 0.112 0.888 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.938 -9.722 -9.950 14.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.301 6.301 3 C 0.017 3.983 4 H 0.118 0.882 5 C -0.212 4.212 6 C 0.022 3.978 7 H 0.129 0.871 8 N -0.847 5.847 9 S 2.809 3.191 10 O -0.980 6.980 11 O -0.980 6.980 12 C -0.724 4.724 13 C -0.170 4.170 14 C -0.143 4.143 15 C -0.161 4.161 16 C 0.063 3.937 17 C -0.525 4.525 18 H 0.097 0.903 19 C -0.175 4.175 20 N -0.446 5.446 21 Si 0.799 3.201 22 H -0.185 1.185 23 H -0.190 1.190 24 H -0.185 1.185 25 C -0.161 4.161 26 C -0.076 4.076 27 C -0.179 4.179 28 C -0.198 4.198 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.117 0.883 32 H 0.079 0.921 33 H 0.113 0.887 34 H 0.265 0.735 35 H 0.146 0.854 36 H 0.141 0.859 37 H 0.129 0.871 38 H 0.102 0.898 39 H 0.130 0.870 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.256 -9.481 -10.146 14.069 hybrid contribution -1.123 0.707 1.211 1.797 sum -3.378 -8.774 -8.935 12.970 Atomic orbital electron populations 1.22952 0.80221 1.03694 1.00455 1.87884 1.20698 1.26963 1.94564 1.23642 0.93700 0.85680 0.95275 0.88231 1.23972 0.97860 1.01278 0.98055 1.22255 0.79824 1.00091 0.95634 0.87078 1.55095 1.26544 1.24524 1.78567 1.00863 0.72378 0.72710 0.73143 1.93497 1.42256 1.79008 1.83265 1.93503 1.86906 1.58451 1.59114 1.30202 1.14294 1.11080 1.16830 1.20423 1.02432 1.02764 0.91385 1.21117 0.97096 0.97831 0.98219 1.21615 0.97768 0.98869 0.97823 1.18004 0.91922 0.92221 0.91588 1.19828 1.10759 1.13741 1.08127 0.90253 1.26690 0.97232 1.00313 0.93304 1.69819 1.27688 1.31856 1.15282 0.85245 0.78368 0.77667 0.78780 1.18456 1.19016 1.18493 1.20830 0.99348 0.97937 0.97993 1.22492 0.94071 0.96356 0.94686 1.21399 0.99513 0.94020 1.02974 1.21800 1.02658 1.00709 0.94589 0.94439 0.92822 0.88337 0.92146 0.88673 0.73521 0.85413 0.85856 0.87061 0.89820 0.86995 0.90932 0.91514 0.92188 0.91952 0.91982 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.85 113.37 1.23 1.63 16 2 O -0.38 -8.60 9.86 -148.98 -1.47 -10.07 16 3 C 0.08 1.73 3.72 31.12 0.12 1.84 16 4 H 0.10 2.06 7.75 -2.39 -0.02 2.05 16 5 C -0.17 -4.74 7.36 31.12 0.23 -4.51 16 6 C 0.13 3.52 3.88 45.57 0.18 3.70 16 7 H 0.11 3.24 7.71 -2.39 -0.02 3.22 16 8 N -1.09 -30.42 5.62 -166.95 -0.94 -31.36 16 9 S 2.72 98.90 5.71 -56.49 -0.32 98.58 16 10 O -0.99 -38.84 17.27 -128.00 -2.21 -41.05 16 11 O -0.99 -40.37 16.76 -128.00 -2.15 -42.52 16 12 C -0.64 -27.29 5.94 22.22 0.13 -27.15 16 13 C -0.15 -6.38 9.53 22.46 0.21 -6.16 16 14 C -0.12 -5.51 10.02 22.22 0.22 -5.29 16 15 C -0.14 -7.10 8.70 22.73 0.20 -6.91 16 16 C 0.07 3.43 5.57 -21.29 -0.12 3.31 16 17 C -0.50 -25.60 9.05 23.46 0.21 -25.39 16 18 H 0.08 3.97 7.91 -2.91 -0.02 3.95 16 19 C 0.04 1.93 5.14 85.26 0.44 2.37 16 20 N -0.82 -40.47 10.97 21.83 0.24 -40.23 16 21 Si 0.98 36.40 29.59 68.60 2.03 38.43 16 22 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 23 H -0.27 -9.40 7.11 99.48 0.71 -8.69 16 24 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 25 C -0.14 -6.68 9.26 22.73 0.21 -6.47 16 26 C -0.07 -1.60 1.35 -51.60 -0.07 -1.66 16 27 C -0.12 -2.34 7.25 71.98 0.52 -1.81 16 28 C -0.14 -2.66 9.17 71.98 0.66 -2.00 16 29 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 33 H 0.09 2.61 7.64 -2.39 -0.02 2.59 16 34 H 0.43 9.75 7.12 -96.75 -0.69 9.06 16 35 H 0.13 4.82 7.60 -2.91 -0.02 4.80 16 36 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16 37 H 0.11 5.78 6.18 -2.91 -0.02 5.76 16 38 H 0.29 12.93 8.30 -92.71 -0.77 12.16 16 39 H 0.11 5.13 7.60 -2.91 -0.02 5.11 16 40 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 41 H 0.07 1.16 7.44 -2.39 -0.02 1.14 16 42 H 0.06 1.21 7.26 -2.39 -0.02 1.19 16 43 H 0.06 1.14 8.01 -2.38 -0.02 1.12 16 44 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -63.72 379.45 -0.13 -63.85 By element: Atomic # 1 Polarization: 38.57 SS G_CDS: 0.31 Total: 38.87 kcal Atomic # 6 Polarization: -78.88 SS G_CDS: 4.37 Total: -74.51 kcal Atomic # 7 Polarization: -70.89 SS G_CDS: -0.70 Total: -71.59 kcal Atomic # 8 Polarization: -87.82 SS G_CDS: -5.82 Total: -93.64 kcal Atomic # 14 Polarization: 36.40 SS G_CDS: 2.03 Total: 38.43 kcal Atomic # 16 Polarization: 98.90 SS G_CDS: -0.32 Total: 98.58 kcal Total: -63.72 -0.13 -63.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619489971.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.276 kcal (2) G-P(sol) polarization free energy of solvation -63.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds